Wall clock time and date at job start Sat Apr 11 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47380 * 2 1 4 4 C 1.34225 * 117.00034 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00060 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00015 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47261 * 59.99967 * 6 4 3 8 8 C 1.53007 * 109.47012 * 300.00372 * 6 4 3 9 9 C 1.52997 * 109.47446 * 180.02562 * 6 4 3 10 10 N 1.46498 * 109.47463 * 185.00068 * 9 6 4 11 11 S 1.65602 * 120.00068 * 164.60570 * 10 9 6 12 12 O 1.42102 * 106.39776 * 307.77652 * 11 10 9 13 13 O 1.42105 * 106.39943 * 174.86317 * 11 10 9 14 14 C 1.76188 * 107.21889 * 61.32022 * 11 10 9 15 15 C 1.37647 * 120.12785 * 244.51011 * 14 11 10 16 16 C 1.38611 * 120.24696 * 180.29868 * 15 14 11 17 17 C 1.38661 * 120.50234 * 359.44509 * 16 15 14 18 18 C 1.37592 * 120.24984 * 0.55650 * 17 16 15 19 19 C 1.40699 * 120.13029 * 64.53903 * 14 11 10 20 20 C 1.41397 * 120.24396 * 359.95031 * 19 14 11 21 21 H 1.08005 * 119.99604 * 331.85946 * 20 19 14 22 22 C 1.39939 * 120.00155 * 151.85580 * 20 19 14 23 23 N 1.30824 * 120.00240 * 347.89136 * 22 20 19 24 24 Si 1.86806 * 120.00032 * 167.88526 * 22 20 19 25 25 H 1.48494 * 109.46839 * 90.00233 * 24 22 20 26 26 H 1.48500 * 109.46927 * 209.99963 * 24 22 20 27 27 H 1.48500 * 109.47050 * 330.00292 * 24 22 20 28 28 H 1.08996 * 109.47484 * 300.00319 * 1 2 3 29 29 H 1.09003 * 109.47276 * 60.00184 * 1 2 3 30 30 H 1.09002 * 109.47684 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46980 * 239.99757 * 2 1 3 32 32 H 1.09002 * 109.46536 * 119.99889 * 2 1 3 33 33 H 1.08994 * 109.47163 * 180.02562 * 8 6 4 34 34 H 1.08998 * 109.46777 * 299.99891 * 8 6 4 35 35 H 1.09003 * 109.47216 * 59.99837 * 8 6 4 36 36 H 1.09001 * 109.46819 * 64.99438 * 9 6 4 37 37 H 1.08998 * 109.46950 * 305.00087 * 9 6 4 38 38 H 0.97005 * 119.99673 * 344.60190 * 10 9 6 39 39 H 1.07993 * 119.87579 * 0.02638 * 15 14 11 40 40 H 1.07998 * 119.74695 * 179.70397 * 16 15 14 41 41 H 1.08000 * 119.87558 * 180.29924 * 17 16 15 42 42 H 1.07992 * 120.13162 * 179.74550 * 18 17 16 43 43 H 0.96998 * 120.00349 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9208 2.9373 0.0012 7 1 3.5846 3.4692 0.8911 8 6 3.4496 3.6847 -1.2481 9 6 5.4487 2.8573 0.0010 10 7 6.0084 4.2057 0.1220 11 16 7.6008 4.4077 0.5292 12 8 7.8128 3.6460 1.7099 13 8 7.8623 5.8021 0.4464 14 6 8.5630 3.6451 -0.7345 15 6 9.3482 2.5533 -0.4410 16 6 10.1109 1.9552 -1.4318 17 6 10.0839 2.4408 -2.7303 18 6 9.3065 3.5311 -3.0466 19 6 8.5324 4.1501 -2.0473 20 6 7.7293 5.2709 -2.3607 21 1 6.8332 5.4692 -1.7913 22 6 8.0956 6.1232 -3.4084 23 7 9.2866 6.0299 -3.9417 24 14 6.8839 7.3942 -4.0457 25 1 7.0505 8.6604 -3.2881 26 1 7.1396 7.6426 -5.4873 27 1 5.4985 6.8898 -3.8684 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 3.8666 4.6917 -1.2479 34 1 3.7858 3.1528 -2.1380 35 1 2.3611 3.7418 -1.2484 36 1 5.7887 2.4049 -0.9306 37 1 5.7807 2.2492 0.8425 38 1 5.4462 4.9802 -0.0364 39 1 9.3733 2.1639 0.5660 40 1 10.7277 1.1018 -1.1915 41 1 10.6786 1.9640 -3.4955 42 1 9.2901 3.9103 -4.0576 43 1 9.5403 6.6204 -4.6682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601370986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:11 Heat of formation + Delta-G solvation = -177.104871 kcal Electronic energy + Delta-G solvation = -28292.120284 eV Core-core repulsion = 24234.846202 eV Total energy + Delta-G solvation = -4057.274082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68486 -39.37463 -38.24130 -37.98015 -37.08306 -36.67431 -35.66069 -33.41916 -32.25542 -31.98718 -31.34798 -27.46486 -27.19048 -25.42351 -23.45422 -23.40778 -22.93173 -21.37988 -20.41460 -19.49908 -18.87919 -18.52284 -17.89825 -17.76634 -17.25027 -17.06174 -16.74397 -16.04770 -15.86545 -15.70770 -15.11036 -14.94105 -14.77289 -14.64897 -14.44855 -14.11519 -13.66289 -13.59310 -13.28412 -13.23685 -13.00028 -12.95803 -12.92916 -12.91190 -12.84785 -12.75733 -12.51683 -12.49919 -12.45578 -12.12314 -12.02789 -11.64611 -11.51488 -11.40034 -11.17332 -11.14823 -10.34018 -9.83905 -9.43108 -8.77579 -6.59917 -0.20007 0.53883 0.98539 1.11721 1.39876 1.52115 1.56375 1.57658 2.18186 2.36473 2.65053 2.96769 3.42416 3.48051 3.72446 3.83492 3.94817 4.03235 4.10718 4.20910 4.32455 4.37760 4.44172 4.49617 4.68659 4.70993 4.77535 4.86785 4.91293 4.95257 4.98417 5.07508 5.15256 5.15979 5.29924 5.31401 5.45024 5.52739 5.71161 5.82705 6.00791 6.08527 6.20741 6.48095 6.67412 6.68649 6.84607 8.18577 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.004031 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.612260 B = 6943.939034 C = 7804.207302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.352 6.352 4 C 0.474 3.526 5 O -0.537 6.537 6 C -0.082 4.082 7 H 0.145 0.855 8 C -0.146 4.146 9 C 0.137 3.863 10 N -1.105 6.105 11 S 2.724 3.276 12 O -1.010 7.010 13 O -0.992 6.992 14 C -0.795 4.795 15 C -0.017 4.017 16 C -0.254 4.254 17 C -0.077 4.077 18 C -0.187 4.187 19 C 0.163 3.837 20 C -0.472 4.472 21 H 0.100 0.900 22 C 0.037 3.963 23 N -0.809 5.809 24 Si 0.976 3.024 25 H -0.266 1.266 26 H -0.264 1.264 27 H -0.235 1.235 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.424 0.576 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.027 -5.097 1.869 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.269 6.269 4 C 0.317 3.683 5 O -0.427 6.427 6 C -0.103 4.103 7 H 0.163 0.837 8 C -0.203 4.203 9 C 0.010 3.990 10 N -0.867 5.867 11 S 2.820 3.180 12 O -1.000 7.000 13 O -0.982 6.982 14 C -0.889 4.889 15 C -0.037 4.037 16 C -0.274 4.274 17 C -0.096 4.096 18 C -0.206 4.206 19 C 0.158 3.842 20 C -0.500 4.500 21 H 0.117 0.883 22 C -0.181 4.181 23 N -0.433 5.433 24 Si 0.795 3.205 25 H -0.191 1.191 26 H -0.188 1.188 27 H -0.158 1.158 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.262 0.738 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.285 -5.033 2.501 17.228 hybrid contribution 0.342 0.082 -1.077 1.133 sum -15.943 -4.950 1.424 16.755 Atomic orbital electron populations 1.21814 0.90149 1.04338 1.03855 1.23326 0.97235 0.79256 1.02536 1.86490 1.23272 1.33629 1.83504 1.23759 0.80971 0.92356 0.71220 1.90697 1.61196 1.44233 1.46547 1.21199 0.93516 0.90342 1.05195 0.83727 1.21857 1.03360 1.00930 0.94187 1.20975 0.92869 0.82524 1.02639 1.55224 1.28635 1.13627 1.89207 1.00269 0.72589 0.72329 0.72857 1.93431 1.85877 1.73629 1.47039 1.93503 1.84225 1.32685 1.87809 1.30153 1.26977 1.18540 1.13241 1.20571 0.92502 0.92127 0.98480 1.20874 1.07579 1.05018 0.93949 1.21240 0.96577 0.95284 0.96468 1.21591 1.02169 0.97124 0.99754 1.17325 0.88543 0.89484 0.88836 1.20188 1.09087 1.06459 1.14220 0.88259 1.26884 0.96948 0.99926 0.94294 1.69831 1.19188 1.34389 1.19870 0.85277 0.79728 0.77489 0.78017 1.19092 1.18774 1.15782 0.91056 0.91148 0.88345 0.91549 0.91353 0.89735 0.92563 0.88867 0.91940 0.90688 0.73804 0.86260 0.85779 0.86107 0.86653 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.05 0.85 6.19 71.98 0.45 1.30 16 3 O -0.35 -7.41 10.12 -51.36 -0.52 -7.93 16 4 C 0.47 12.06 7.26 71.24 0.52 12.57 16 5 O -0.54 -17.44 15.67 21.97 0.34 -17.09 16 6 C -0.08 -1.85 2.94 -11.54 -0.03 -1.88 16 7 H 0.15 2.45 8.14 -2.39 -0.02 2.44 16 8 C -0.15 -2.84 9.00 71.98 0.65 -2.19 16 9 C 0.14 4.19 4.91 86.38 0.42 4.61 16 10 N -1.11 -36.31 4.92 -187.50 -0.92 -37.23 16 11 S 2.72 118.10 4.94 -56.49 -0.28 117.82 16 12 O -1.01 -45.97 16.57 -128.00 -2.12 -48.09 16 13 O -0.99 -48.56 16.61 -128.00 -2.13 -50.68 16 14 C -0.80 -38.57 5.86 22.73 0.13 -38.44 16 15 C -0.02 -0.79 9.54 22.22 0.21 -0.58 16 16 C -0.25 -11.15 10.05 22.46 0.23 -10.92 16 17 C -0.08 -3.48 10.02 22.22 0.22 -3.25 16 18 C -0.19 -9.40 8.66 22.73 0.20 -9.21 16 19 C 0.16 8.36 5.55 -21.29 -0.12 8.24 16 20 C -0.47 -23.26 7.67 23.46 0.18 -23.08 16 21 H 0.10 4.43 5.78 -2.91 -0.02 4.41 16 22 C 0.04 1.77 5.23 85.26 0.45 2.21 16 23 N -0.81 -39.93 10.88 21.82 0.24 -39.70 16 24 Si 0.98 34.86 29.58 68.60 2.03 36.89 16 25 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 26 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 27 H -0.24 -7.56 7.11 99.48 0.71 -6.85 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 32 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 33 H 0.08 1.55 6.89 -2.39 -0.02 1.54 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.39 8.11 -2.39 -0.02 1.37 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.07 2.45 7.65 -2.39 -0.02 2.44 16 38 H 0.42 11.41 7.25 -96.74 -0.70 10.71 16 39 H 0.12 5.13 7.33 -2.91 -0.02 5.10 16 40 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 41 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.12 5.91 6.23 -2.91 -0.02 5.89 16 43 H 0.29 13.04 8.30 -92.71 -0.77 12.27 16 Total: -1.00 -69.55 372.53 1.22 -68.33 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.34 Total: 39.05 kcal Atomic # 6 Polarization: -65.62 SS G_CDS: 4.24 Total: -61.38 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -0.69 Total: -76.93 kcal Atomic # 8 Polarization: -119.37 SS G_CDS: -4.42 Total: -123.79 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Atomic # 16 Polarization: 118.10 SS G_CDS: -0.28 Total: 117.82 kcal Total: -69.55 1.22 -68.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601370986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.778 kcal (2) G-P(sol) polarization free energy of solvation -69.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds