Wall clock time and date at job start Sat Apr 11 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.71135 * 2 1 4 4 C 1.53717 * 109.74833 * 120.76749 * 2 1 3 5 5 O 1.42968 * 109.14646 * 172.16690 * 4 2 1 6 6 C 1.42967 * 114.16270 * 297.28870 * 5 4 2 7 7 H 1.09002 * 109.55328 * 302.63091 * 6 5 4 8 8 C 1.53003 * 109.50683 * 182.50910 * 6 5 4 9 9 O 1.42888 * 109.47394 * 65.25480 * 8 6 5 10 10 C 1.53293 * 109.22250 * 62.58517 * 6 5 4 11 11 N 1.47148 * 108.38412 * 307.69377 * 10 6 5 12 12 S 1.65604 * 120.98184 * 230.51258 * 11 10 6 13 13 O 1.42094 * 106.40144 * 349.41114 * 12 11 10 14 14 O 1.42095 * 106.40379 * 216.48675 * 12 11 10 15 15 C 1.76205 * 107.21772 * 102.94981 * 12 11 10 16 16 C 1.37638 * 120.12680 * 111.35007 * 15 12 11 17 17 C 1.38620 * 120.24711 * 180.02562 * 16 15 12 18 18 C 1.38666 * 120.49972 * 0.02665 * 17 16 15 19 19 C 1.37596 * 120.24459 * 359.67324 * 18 17 16 20 20 C 1.40704 * 120.12621 * 291.37895 * 15 12 11 21 21 C 1.41394 * 120.24358 * 359.97438 * 20 15 12 22 22 H 1.07994 * 120.00107 * 37.37858 * 21 20 15 23 23 C 1.39946 * 119.99436 * 217.38340 * 21 20 15 24 24 N 1.30821 * 120.00496 * 10.86502 * 23 21 20 25 25 Si 1.86804 * 119.99556 * 190.86713 * 23 21 20 26 26 H 1.48505 * 109.47030 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47032 * 240.00042 * 25 23 21 28 28 H 1.48501 * 109.46905 * 119.99741 * 25 23 21 29 29 H 1.08999 * 109.47152 * 166.18523 * 1 2 3 30 30 H 1.09004 * 109.47051 * 286.17905 * 1 2 3 31 31 H 1.08996 * 109.47238 * 46.18323 * 1 2 3 32 32 H 1.09003 * 109.65753 * 52.20101 * 4 2 1 33 33 H 1.09001 * 109.44241 * 292.00076 * 4 2 1 34 34 H 1.09007 * 109.46743 * 185.25841 * 8 6 5 35 35 H 1.09006 * 109.46735 * 305.24982 * 8 6 5 36 36 H 0.96700 * 114.00345 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.68088 * 187.97506 * 10 6 5 38 38 H 1.08994 * 109.71230 * 67.43707 * 10 6 5 39 39 H 1.08001 * 119.87753 * 0.05165 * 16 15 12 40 40 H 1.07993 * 119.74901 * 180.02562 * 17 16 15 41 41 H 1.08000 * 119.87170 * 179.97438 * 18 17 16 42 42 H 1.08009 * 120.12138 * 180.30107 * 19 18 17 43 43 H 0.96996 * 119.99674 * 5.40230 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0493 -0.7401 1.2431 5 8 3.4671 -0.8928 1.1397 6 6 3.8907 -1.6867 0.0288 7 1 3.4298 -2.6727 0.0883 8 6 5.4136 -1.8319 0.0558 9 8 5.8008 -2.5745 1.2135 10 6 3.4648 -1.0000 -1.2739 11 7 2.0256 -0.7040 -1.1934 12 16 0.9952 -1.1438 -2.4129 13 8 1.8126 -1.5582 -3.4989 14 8 0.0311 -0.1053 -2.5179 15 6 0.1257 -2.5768 -1.8696 16 6 -1.2215 -2.5054 -1.5970 17 6 -1.9080 -3.6310 -1.1689 18 6 -1.2476 -4.8399 -1.0099 19 6 0.0976 -4.9359 -1.2825 20 6 0.8060 -3.7984 -1.7123 21 6 2.1899 -3.8836 -1.9893 22 1 2.8428 -3.0612 -1.7369 23 6 2.7135 -5.0337 -2.5906 24 7 1.9078 -5.9361 -3.0888 25 14 4.5629 -5.2804 -2.6820 26 1 5.2483 -4.1243 -2.0504 27 1 4.9785 -5.3867 -4.1036 28 1 4.9320 -6.5267 -1.9637 29 1 -0.3633 -0.9979 -0.2454 30 1 -0.3633 0.2864 0.9870 31 1 -0.3633 0.7115 -0.7415 32 1 1.5811 -1.7223 1.3074 33 1 1.8095 -0.1625 2.1359 34 1 5.7444 -2.3571 -0.8403 35 1 5.8722 -0.8436 0.0877 36 1 6.7554 -2.7052 1.2959 37 1 3.6565 -1.6627 -2.1179 38 1 4.0238 -0.0730 -1.4006 39 1 -1.7459 -1.5689 -1.7174 40 1 -2.9651 -3.5660 -0.9577 41 1 -1.7923 -5.7105 -0.6754 42 1 0.6090 -5.8797 -1.1626 43 1 0.9520 -5.7728 -3.1122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601372131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:16 Heat of formation + Delta-G solvation = -137.126990 kcal Electronic energy + Delta-G solvation = -30632.714378 eV Core-core repulsion = 26577.173867 eV Total energy + Delta-G solvation = -4055.540511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.39553 -37.97662 -36.84457 -36.41035 -35.02723 -34.73625 -34.10127 -32.61706 -30.38325 -29.59227 -28.95296 -26.06872 -25.42422 -24.63516 -22.17759 -21.90317 -21.26029 -20.66519 -18.45696 -18.11467 -17.33707 -17.02379 -16.52946 -16.05884 -15.82897 -15.12380 -14.84955 -14.73942 -14.44945 -14.31469 -14.16033 -13.86853 -13.58705 -13.41088 -12.81618 -12.71507 -12.54243 -12.36080 -12.06785 -11.76505 -11.50499 -11.41188 -11.32628 -11.24373 -11.14902 -11.13696 -10.91414 -10.71149 -10.57937 -10.54920 -10.13313 -9.94396 -9.84895 -9.62429 -9.39906 -9.33425 -8.44138 -8.24902 -7.80288 -7.38467 -4.88511 1.29162 2.09813 2.54821 3.02729 3.14864 3.17159 3.57058 3.85994 3.90430 4.25775 4.35515 4.56856 4.91512 4.98512 5.05856 5.17383 5.27171 5.35515 5.37080 5.44156 5.56141 5.63492 5.71000 5.78999 5.81366 5.82051 5.91221 5.96709 6.16782 6.18586 6.30705 6.33336 6.48897 6.64001 6.75462 6.96339 7.05251 7.19181 7.31045 7.39263 7.48464 7.54433 7.72423 7.75407 7.90128 8.27267 8.55911 9.88739 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009048 B = 0.008395 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.805657 B = 3334.336496 C = 4979.663002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.129 3.871 3 H 0.079 0.921 4 C 0.053 3.947 5 O -0.371 6.371 6 C 0.072 3.928 7 H 0.089 0.911 8 C 0.083 3.917 9 O -0.563 6.563 10 C 0.092 3.908 11 N -0.998 5.998 12 S 2.701 3.299 13 O -0.959 6.959 14 O -0.989 6.989 15 C -0.771 4.771 16 C 0.005 3.995 17 C -0.252 4.252 18 C -0.058 4.058 19 C -0.201 4.201 20 C 0.169 3.831 21 C -0.513 4.513 22 H 0.093 0.907 23 C 0.043 3.957 24 N -0.795 5.795 25 Si 1.068 2.932 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.272 1.272 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.375 0.625 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.592 6.604 6.245 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C 0.022 3.978 3 H 0.097 0.903 4 C -0.025 4.025 5 O -0.289 6.289 6 C 0.013 3.987 7 H 0.107 0.893 8 C 0.005 3.995 9 O -0.367 6.367 10 C -0.034 4.034 11 N -0.835 5.835 12 S 2.801 3.199 13 O -0.949 6.949 14 O -0.980 6.980 15 C -0.866 4.866 16 C -0.014 4.014 17 C -0.272 4.272 18 C -0.077 4.077 19 C -0.221 4.221 20 C 0.164 3.836 21 C -0.541 4.541 22 H 0.111 0.889 23 C -0.179 4.179 24 N -0.419 5.419 25 Si 0.891 3.109 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.197 1.197 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.222 0.778 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.130 0.870 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.147 6.050 5.134 9.458 hybrid contribution -1.239 0.267 0.732 1.464 sum 3.908 6.317 5.866 9.465 Atomic orbital electron populations 1.22833 0.93301 1.05897 1.04605 1.21579 0.94804 0.96020 0.85377 0.90282 1.23099 0.81834 1.00474 0.97098 1.87908 1.21514 1.72022 1.47496 1.22575 0.93952 0.95873 0.86285 0.89306 1.22174 0.93394 0.95350 0.88614 1.86555 1.27951 1.76750 1.45442 1.22000 0.81090 1.01092 0.99192 1.58088 1.17396 1.72280 1.35713 1.01226 0.72538 0.73638 0.72516 1.93511 1.68363 1.83274 1.49778 1.93441 1.61752 1.56602 1.86209 1.30113 1.05210 1.17728 1.33557 1.20347 0.92281 0.97353 0.91461 1.20527 0.98588 0.93964 1.14152 1.20893 0.94600 0.96223 0.95984 1.21412 0.94400 0.99429 1.06874 1.17075 0.92505 0.89485 0.84540 1.21123 0.93149 1.05232 1.34625 0.88936 1.27001 1.08592 0.90721 0.91596 1.70388 1.08933 1.33683 1.28899 0.83618 0.71630 0.77412 0.78228 1.19551 1.19710 1.19738 0.90410 0.90805 0.87910 0.92160 0.88408 0.91420 0.92924 0.77838 0.86689 0.91013 0.86969 0.88278 0.88381 0.86989 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.22 7.82 37.15 0.29 -2.93 16 2 C 0.13 2.01 3.67 -67.21 -0.25 1.77 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.05 0.81 6.27 37.53 0.24 1.05 16 5 O -0.37 -6.21 10.35 -39.72 -0.41 -6.62 16 6 C 0.07 1.22 2.77 -26.58 -0.07 1.14 16 7 H 0.09 1.72 6.90 -51.93 -0.36 1.36 16 8 C 0.08 1.15 6.71 37.16 0.25 1.40 16 9 O -0.56 -7.90 13.63 -39.72 -0.54 -8.44 16 10 C 0.09 1.56 4.82 -3.54 -0.02 1.55 16 11 N -1.00 -18.28 3.24 -105.81 -0.34 -18.62 16 12 S 2.70 58.51 4.49 -107.50 -0.48 58.02 16 13 O -0.96 -23.40 14.97 -57.17 -0.86 -24.26 16 14 O -0.99 -21.48 13.48 -57.17 -0.77 -22.25 16 15 C -0.77 -17.71 5.10 -38.87 -0.20 -17.90 16 16 C 0.01 0.11 7.60 -39.66 -0.30 -0.19 16 17 C -0.25 -5.16 10.05 -39.28 -0.39 -5.56 16 18 C -0.06 -1.23 10.02 -39.66 -0.40 -1.62 16 19 C -0.20 -4.73 7.69 -38.88 -0.30 -5.03 16 20 C 0.17 4.12 5.20 -106.82 -0.56 3.57 16 21 C -0.51 -12.43 7.00 -37.74 -0.26 -12.70 16 22 H 0.09 2.07 2.07 -52.49 -0.11 1.96 16 23 C 0.04 1.04 5.21 -17.34 -0.09 0.95 16 24 N -0.80 -20.33 12.63 55.55 0.70 -19.63 16 25 Si 1.07 20.64 29.95 -169.99 -5.09 15.55 16 26 H -0.27 -4.59 6.35 56.52 0.36 -4.23 16 27 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 28 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 29 H 0.08 1.35 3.75 -51.93 -0.19 1.16 16 30 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.10 1.68 6.20 -51.93 -0.32 1.36 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.07 0.87 7.38 -51.92 -0.38 0.49 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.38 3.19 9.12 45.56 0.42 3.60 16 37 H 0.12 2.10 5.30 -51.93 -0.27 1.83 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 2.20 7.13 -52.49 -0.37 1.82 16 40 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.11 2.68 6.82 -52.48 -0.36 2.32 16 43 H 0.30 7.91 5.99 -40.82 -0.24 7.66 16 LS Contribution 338.82 15.07 5.11 5.11 Total: -1.00 -30.65 338.82 -9.17 -39.82 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -4.42 Total: 15.83 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: -2.06 Total: -34.51 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.36 Total: -38.25 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -2.58 Total: -61.57 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.09 Total: 15.55 kcal Atomic # 16 Polarization: 58.51 SS G_CDS: -0.48 Total: 58.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.65 -9.17 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.307 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds