Wall clock time and date at job start Sat Apr 11 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.71135 * 2 1 4 4 C 1.53717 * 109.74833 * 120.76749 * 2 1 3 5 5 O 1.42968 * 109.14646 * 172.16690 * 4 2 1 6 6 C 1.42967 * 114.16270 * 297.28870 * 5 4 2 7 7 H 1.09002 * 109.55328 * 302.63091 * 6 5 4 8 8 C 1.53003 * 109.50683 * 182.50910 * 6 5 4 9 9 O 1.42888 * 109.47394 * 65.25480 * 8 6 5 10 10 C 1.53293 * 109.22250 * 62.58517 * 6 5 4 11 11 N 1.47148 * 108.38412 * 307.69377 * 10 6 5 12 12 S 1.65604 * 120.98184 * 230.51258 * 11 10 6 13 13 O 1.42094 * 106.40144 * 349.41114 * 12 11 10 14 14 O 1.42095 * 106.40379 * 216.48675 * 12 11 10 15 15 C 1.76205 * 107.21772 * 102.94981 * 12 11 10 16 16 C 1.37638 * 120.12680 * 111.35007 * 15 12 11 17 17 C 1.38620 * 120.24711 * 180.02562 * 16 15 12 18 18 C 1.38666 * 120.49972 * 0.02665 * 17 16 15 19 19 C 1.37596 * 120.24459 * 359.67324 * 18 17 16 20 20 C 1.40704 * 120.12621 * 291.37895 * 15 12 11 21 21 C 1.41394 * 120.24358 * 359.97438 * 20 15 12 22 22 H 1.07994 * 120.00107 * 37.37858 * 21 20 15 23 23 C 1.39946 * 119.99436 * 217.38340 * 21 20 15 24 24 N 1.30821 * 120.00496 * 10.86502 * 23 21 20 25 25 Si 1.86804 * 119.99556 * 190.86713 * 23 21 20 26 26 H 1.48505 * 109.47030 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47032 * 240.00042 * 25 23 21 28 28 H 1.48501 * 109.46905 * 119.99741 * 25 23 21 29 29 H 1.08999 * 109.47152 * 166.18523 * 1 2 3 30 30 H 1.09004 * 109.47051 * 286.17905 * 1 2 3 31 31 H 1.08996 * 109.47238 * 46.18323 * 1 2 3 32 32 H 1.09003 * 109.65753 * 52.20101 * 4 2 1 33 33 H 1.09001 * 109.44241 * 292.00076 * 4 2 1 34 34 H 1.09007 * 109.46743 * 185.25841 * 8 6 5 35 35 H 1.09006 * 109.46735 * 305.24982 * 8 6 5 36 36 H 0.96700 * 114.00345 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.68088 * 187.97506 * 10 6 5 38 38 H 1.08994 * 109.71230 * 67.43707 * 10 6 5 39 39 H 1.08001 * 119.87753 * 0.05165 * 16 15 12 40 40 H 1.07993 * 119.74901 * 180.02562 * 17 16 15 41 41 H 1.08000 * 119.87170 * 179.97438 * 18 17 16 42 42 H 1.08009 * 120.12138 * 180.30107 * 19 18 17 43 43 H 0.96996 * 119.99674 * 5.40230 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0493 -0.7401 1.2431 5 8 3.4671 -0.8928 1.1397 6 6 3.8907 -1.6867 0.0288 7 1 3.4298 -2.6727 0.0883 8 6 5.4136 -1.8319 0.0558 9 8 5.8008 -2.5745 1.2135 10 6 3.4648 -1.0000 -1.2739 11 7 2.0256 -0.7040 -1.1934 12 16 0.9952 -1.1438 -2.4129 13 8 1.8126 -1.5582 -3.4989 14 8 0.0311 -0.1053 -2.5179 15 6 0.1257 -2.5768 -1.8696 16 6 -1.2215 -2.5054 -1.5970 17 6 -1.9080 -3.6310 -1.1689 18 6 -1.2476 -4.8399 -1.0099 19 6 0.0976 -4.9359 -1.2825 20 6 0.8060 -3.7984 -1.7123 21 6 2.1899 -3.8836 -1.9893 22 1 2.8428 -3.0612 -1.7369 23 6 2.7135 -5.0337 -2.5906 24 7 1.9078 -5.9361 -3.0888 25 14 4.5629 -5.2804 -2.6820 26 1 5.2483 -4.1243 -2.0504 27 1 4.9785 -5.3867 -4.1036 28 1 4.9320 -6.5267 -1.9637 29 1 -0.3633 -0.9979 -0.2454 30 1 -0.3633 0.2864 0.9870 31 1 -0.3633 0.7115 -0.7415 32 1 1.5811 -1.7223 1.3074 33 1 1.8095 -0.1625 2.1359 34 1 5.7444 -2.3571 -0.8403 35 1 5.8722 -0.8436 0.0877 36 1 6.7554 -2.7052 1.2959 37 1 3.6565 -1.6627 -2.1179 38 1 4.0238 -0.0730 -1.4006 39 1 -1.7459 -1.5689 -1.7174 40 1 -2.9651 -3.5660 -0.9577 41 1 -1.7923 -5.7105 -0.6754 42 1 0.6090 -5.8797 -1.1626 43 1 0.9520 -5.7728 -3.1122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601372131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:16 Heat of formation + Delta-G solvation = -160.715979 kcal Electronic energy + Delta-G solvation = -30633.737273 eV Core-core repulsion = 26577.173867 eV Total energy + Delta-G solvation = -4056.563407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67849 -39.69451 -38.45725 -37.58555 -36.77065 -36.09979 -35.83693 -33.89581 -32.10724 -31.31445 -30.23220 -27.46101 -27.04140 -25.86668 -23.76035 -23.28359 -23.00798 -21.98995 -20.18851 -19.72685 -18.54545 -18.45843 -17.83959 -17.64324 -17.30507 -16.69380 -16.28389 -16.04827 -15.90643 -15.70571 -15.66172 -15.44330 -15.09068 -14.86267 -14.41848 -14.15517 -13.98141 -13.64031 -13.52654 -13.31402 -13.08817 -13.03106 -12.94031 -12.81282 -12.72031 -12.59892 -12.31106 -12.20926 -12.03086 -11.88526 -11.58113 -11.40946 -11.19376 -11.12249 -10.99608 -10.84980 -10.04240 -9.73645 -9.56786 -9.21561 -6.71380 -0.35651 0.34541 0.80144 1.44443 1.60325 1.68312 2.04370 2.28958 2.61820 2.71273 2.87651 3.17496 3.25930 3.56114 3.73542 3.78872 4.04194 4.06904 4.16654 4.19043 4.25497 4.29843 4.37037 4.52220 4.52768 4.57124 4.57671 4.65237 4.74444 4.76331 4.92428 4.98800 5.04217 5.09985 5.31394 5.38324 5.45455 5.49555 5.64746 5.72634 5.77568 5.96395 6.13050 6.14605 6.50941 6.79456 6.97930 8.02756 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009048 B = 0.008395 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.805657 B = 3334.336496 C = 4979.663002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.124 3.876 3 H 0.105 0.895 4 C 0.053 3.947 5 O -0.374 6.374 6 C 0.072 3.928 7 H 0.054 0.946 8 C 0.084 3.916 9 O -0.585 6.585 10 C 0.086 3.914 11 N -0.997 5.997 12 S 2.715 3.285 13 O -0.993 6.993 14 O -0.993 6.993 15 C -0.784 4.784 16 C -0.003 4.003 17 C -0.247 4.247 18 C -0.056 4.056 19 C -0.227 4.227 20 C 0.147 3.853 21 C -0.539 4.539 22 H 0.106 0.894 23 C 0.005 3.995 24 N -0.828 5.828 25 Si 1.095 2.905 26 H -0.235 1.235 27 H -0.272 1.272 28 H -0.265 1.265 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.399 0.601 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 8.577 7.823 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C 0.019 3.981 3 H 0.123 0.877 4 C -0.025 4.025 5 O -0.292 6.292 6 C 0.012 3.988 7 H 0.072 0.928 8 C 0.006 3.994 9 O -0.393 6.393 10 C -0.039 4.039 11 N -0.836 5.836 12 S 2.813 3.187 13 O -0.983 6.983 14 O -0.984 6.984 15 C -0.877 4.877 16 C -0.023 4.023 17 C -0.267 4.267 18 C -0.075 4.075 19 C -0.247 4.247 20 C 0.143 3.857 21 C -0.567 4.567 22 H 0.124 0.876 23 C -0.211 4.211 24 N -0.452 5.452 25 Si 0.911 3.089 26 H -0.158 1.158 27 H -0.197 1.197 28 H -0.190 1.190 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.151 0.849 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.249 0.751 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.114 0.886 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.650 8.022 6.729 11.897 hybrid contribution -1.561 -0.244 0.343 1.617 sum 4.089 7.778 7.072 11.279 Atomic orbital electron populations 1.22832 0.93167 1.04276 1.06448 1.21883 0.95054 0.96960 0.84197 0.87681 1.23232 0.81117 0.99845 0.98323 1.87906 1.22194 1.71710 1.47437 1.22545 0.95946 0.94108 0.86173 0.92796 1.22184 0.91299 0.96976 0.88968 1.86490 1.30436 1.76913 1.45477 1.22170 0.80501 1.02397 0.98811 1.57854 1.17596 1.72172 1.35978 1.00698 0.72363 0.73117 0.72525 1.93463 1.69149 1.83768 1.51951 1.93435 1.62125 1.56195 1.86605 1.30417 1.06311 1.18098 1.32892 1.20670 0.91899 0.98541 0.91140 1.20969 1.00235 0.93125 1.12360 1.21254 0.93819 0.97735 0.94648 1.21438 0.95739 0.98926 1.08645 1.17390 0.93188 0.90331 0.84815 1.21409 0.93658 1.06136 1.35519 0.87603 1.28318 1.11857 0.90418 0.90494 1.70500 1.08145 1.34779 1.31822 0.83401 0.67770 0.79073 0.78628 1.15802 1.19679 1.18961 0.92605 0.87272 0.88785 0.94450 0.84851 0.90553 0.90248 0.75105 0.88413 0.87691 0.85211 0.84749 0.85471 0.88559 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.99 7.82 71.98 0.56 -5.43 16 2 C 0.12 3.59 3.67 45.11 0.17 3.76 16 3 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.05 1.49 6.27 72.22 0.45 1.94 16 5 O -0.37 -11.68 10.35 -144.69 -1.50 -13.17 16 6 C 0.07 2.32 2.77 30.69 0.09 2.40 16 7 H 0.05 2.12 6.90 -2.39 -0.02 2.10 16 8 C 0.08 2.12 6.71 71.98 0.48 2.60 16 9 O -0.58 -15.11 13.63 -144.69 -1.97 -17.09 16 10 C 0.09 2.82 4.82 86.35 0.42 3.24 16 11 N -1.00 -35.40 3.24 -488.66 -1.58 -36.98 16 12 S 2.71 117.47 4.49 -56.49 -0.25 117.21 16 13 O -0.99 -49.38 14.97 -128.00 -1.92 -51.29 16 14 O -0.99 -42.35 13.48 -128.00 -1.73 -44.07 16 15 C -0.78 -36.38 5.10 22.73 0.12 -36.26 16 16 C 0.00 -0.12 7.60 22.22 0.17 0.04 16 17 C -0.25 -9.72 10.05 22.46 0.23 -9.50 16 18 C -0.06 -2.34 10.02 22.22 0.22 -2.11 16 19 C -0.23 -11.08 7.69 22.73 0.17 -10.90 16 20 C 0.15 7.43 5.20 -21.29 -0.11 7.32 16 21 C -0.54 -27.05 7.00 23.46 0.16 -26.88 16 22 H 0.11 4.86 2.07 -2.91 -0.01 4.86 16 23 C 0.00 0.23 5.21 85.26 0.44 0.67 16 24 N -0.83 -44.51 12.63 21.83 0.28 -44.23 16 25 Si 1.09 41.79 29.95 68.60 2.05 43.84 16 26 H -0.24 -7.46 6.35 99.48 0.63 -6.83 16 27 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 28 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 29 H 0.06 1.86 3.75 -2.39 -0.01 1.86 16 30 H 0.11 2.28 8.09 -2.38 -0.02 2.26 16 31 H 0.09 2.87 6.20 -2.39 -0.01 2.85 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.08 1.76 7.38 -2.38 -0.02 1.75 16 35 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.40 5.70 9.12 -74.06 -0.68 5.03 16 37 H 0.10 3.55 5.30 -2.38 -0.01 3.54 16 38 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.13 4.90 7.13 -2.91 -0.02 4.88 16 40 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 41 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.10 4.89 6.82 -2.91 -0.02 4.87 16 43 H 0.29 15.92 5.99 -92.71 -0.56 15.37 16 Total: -1.00 -68.94 338.82 -2.51 -71.45 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: 0.53 Total: 43.44 kcal Atomic # 6 Polarization: -72.68 SS G_CDS: 3.57 Total: -69.11 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -1.31 Total: -81.21 kcal Atomic # 8 Polarization: -118.52 SS G_CDS: -7.11 Total: -125.63 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.05 Total: 43.84 kcal Atomic # 16 Polarization: 117.47 SS G_CDS: -0.25 Total: 117.21 kcal Total: -68.94 -2.51 -71.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.267 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds