Wall clock time and date at job start Sat Apr 11 2020 06:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.51317 * 2 1 4 4 C 1.53292 * 109.51368 * 239.89837 * 2 1 3 5 5 N 1.47150 * 108.38745 * 187.77434 * 4 2 1 6 6 S 1.65599 * 120.98390 * 230.51175 * 5 4 2 7 7 O 1.42102 * 106.40181 * 330.72430 * 6 5 4 8 8 O 1.42104 * 106.40346 * 197.80034 * 6 5 4 9 9 C 1.76198 * 107.21819 * 84.26333 * 6 5 4 10 10 C 1.37644 * 120.13170 * 14.79500 * 9 6 5 11 11 C 1.38605 * 120.25155 * 180.25443 * 10 9 6 12 12 C 1.38654 * 120.50350 * 359.76889 * 11 10 9 13 13 C 1.37605 * 120.24793 * 359.96734 * 12 11 10 14 14 C 1.40702 * 120.12992 * 194.53696 * 9 6 5 15 15 C 1.41387 * 120.24084 * 0.02562 * 14 9 6 16 16 H 1.08002 * 120.00347 * 332.76015 * 15 14 9 17 17 C 1.39949 * 120.00153 * 152.75867 * 15 14 9 18 18 N 1.30823 * 119.99937 * 343.13934 * 17 15 14 19 19 Si 1.86800 * 120.00176 * 162.86771 * 17 15 14 20 20 H 1.48508 * 109.47015 * 65.00532 * 19 17 15 21 21 H 1.48499 * 109.47394 * 185.00373 * 19 17 15 22 22 H 1.48497 * 109.47147 * 305.00581 * 19 17 15 23 23 C 1.47159 * 118.03253 * 50.78281 * 5 4 2 24 24 C 1.53710 * 108.16290 * 309.16021 * 23 5 4 25 25 H 1.09006 * 109.65476 * 292.57153 * 24 23 5 26 26 C 1.52996 * 109.48523 * 172.40244 * 24 23 5 27 27 O 1.42900 * 109.47444 * 175.36586 * 26 24 23 28 28 O 1.42957 * 109.14812 * 52.53636 * 24 23 5 29 29 H 1.09003 * 109.47059 * 184.66557 * 1 2 3 30 30 H 1.09001 * 109.47108 * 304.66674 * 1 2 3 31 31 H 1.08999 * 109.47002 * 64.66689 * 1 2 3 32 32 H 1.09000 * 109.68219 * 68.04951 * 4 2 1 33 33 H 1.09000 * 109.71258 * 307.51639 * 4 2 1 34 34 H 1.08010 * 119.87182 * 0.02562 * 10 9 6 35 35 H 1.07999 * 119.74982 * 179.74051 * 11 10 9 36 36 H 1.07997 * 119.88128 * 180.02562 * 12 11 10 37 37 H 1.07994 * 120.12773 * 180.02562 * 13 12 11 38 38 H 0.96995 * 119.99879 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.68486 * 68.94316 * 23 5 4 40 40 H 1.09000 * 109.67986 * 189.49372 * 23 5 4 41 41 H 1.09001 * 109.47371 * 295.36287 * 26 24 23 42 42 H 1.08998 * 109.47416 * 55.36353 * 26 24 23 43 43 H 0.96694 * 114.00531 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5011 -0.8757 -1.1340 6 16 4.5064 -0.4182 -2.3678 7 8 3.7655 -0.5793 -3.5697 8 8 5.7515 -1.0604 -2.1302 9 6 4.7966 1.3107 -2.1903 10 6 4.4792 1.9471 -1.0119 11 6 4.7015 3.3080 -0.8714 12 6 5.2495 4.0427 -1.9118 13 6 5.5795 3.4264 -3.0970 14 6 5.3587 2.0450 -3.2507 15 6 5.6933 1.4011 -4.4641 16 1 5.9433 0.3504 -4.4669 17 6 5.7005 2.1251 -5.6618 18 7 5.0944 3.2824 -5.7301 19 14 6.5819 1.4425 -7.1606 20 1 5.9067 0.1977 -7.6077 21 1 6.5464 2.4454 -8.2552 22 1 7.9933 1.1417 -6.8105 23 6 4.0402 -1.4511 0.1086 24 6 3.4312 -0.6860 1.2945 25 1 3.8030 0.3387 1.2996 26 6 3.8211 -1.3776 2.6024 27 8 3.3465 -0.6074 3.7085 28 8 2.0075 -0.6768 1.1652 29 1 -0.3633 -1.0243 0.0836 30 1 -0.3633 0.5845 0.8452 31 1 -0.3633 0.4397 -0.9288 32 1 1.8030 -0.1389 -2.1377 33 1 1.5758 -1.7073 -1.3222 34 1 4.0518 1.3846 -0.1948 35 1 4.4456 3.8000 0.0554 36 1 5.4189 5.1025 -1.7912 37 1 6.0066 4.0004 -3.9059 38 1 5.0997 3.7844 -6.5600 39 1 3.7718 -2.5056 0.1716 40 1 5.1251 -1.3465 0.1210 41 1 3.3758 -2.3720 2.6344 42 1 4.9063 -1.4635 2.6585 43 1 3.5587 -0.9870 4.5721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601401770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:27 Heat of formation + Delta-G solvation = -146.017996 kcal Electronic energy + Delta-G solvation = -29344.986725 eV Core-core repulsion = 25289.060671 eV Total energy + Delta-G solvation = -4055.926054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.57316 -37.63224 -36.78333 -36.26284 -34.94621 -34.66397 -33.90382 -33.09429 -30.28482 -29.68624 -29.47236 -26.53672 -25.60576 -24.57812 -21.96183 -21.73025 -21.47967 -20.58593 -18.43115 -17.74510 -17.49613 -16.98663 -16.81091 -16.34872 -15.72695 -15.35097 -15.27059 -14.71109 -14.45967 -14.25942 -14.08611 -13.89487 -13.48821 -13.10695 -12.79887 -12.75512 -12.68813 -12.27372 -12.04877 -11.95780 -11.70717 -11.56716 -11.45596 -11.34392 -11.21809 -11.09230 -11.01338 -11.00042 -10.69938 -10.57118 -10.38386 -10.19803 -10.14061 -9.87545 -9.41044 -9.23396 -8.58443 -8.06321 -7.68897 -7.08777 -4.78954 1.27718 2.31625 2.69304 2.96929 3.02213 3.12266 3.54892 3.59887 3.79071 4.01871 4.34373 4.61460 4.83033 4.85449 4.94471 5.01593 5.12160 5.15387 5.25871 5.32748 5.36666 5.46059 5.49571 5.62521 5.71175 5.78903 5.80348 5.94855 6.02505 6.11465 6.18507 6.23529 6.35533 6.69368 6.79460 6.87054 7.03230 7.23772 7.25459 7.40411 7.49629 7.58941 7.74914 7.84082 8.24092 8.46621 8.59696 9.85406 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.004227 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.810998 B = 6622.562397 C = 7001.360477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.069 0.931 4 C 0.096 3.904 5 N -1.009 6.009 6 S 2.700 3.300 7 O -0.958 6.958 8 O -0.980 6.980 9 C -0.774 4.774 10 C -0.014 4.014 11 C -0.248 4.248 12 C -0.077 4.077 13 C -0.153 4.153 14 C 0.189 3.811 15 C -0.455 4.455 16 H 0.082 0.918 17 C 0.085 3.915 18 N -0.771 5.771 19 Si 0.912 3.088 20 H -0.256 1.256 21 H -0.272 1.272 22 H -0.256 1.256 23 C 0.095 3.905 24 C 0.075 3.925 25 H 0.075 0.925 26 C 0.086 3.914 27 O -0.564 6.564 28 O -0.365 6.365 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.290 0.710 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -5.745 10.828 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.011 3.989 3 H 0.087 0.913 4 C -0.030 4.030 5 N -0.845 5.845 6 S 2.798 3.202 7 O -0.948 6.948 8 O -0.971 6.971 9 C -0.868 4.868 10 C -0.033 4.033 11 C -0.268 4.268 12 C -0.096 4.096 13 C -0.173 4.173 14 C 0.184 3.816 15 C -0.483 4.483 16 H 0.100 0.900 17 C -0.137 4.137 18 N -0.393 5.393 19 Si 0.734 3.266 20 H -0.180 1.180 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.032 4.032 24 C 0.016 3.984 25 H 0.093 0.907 26 C 0.007 3.993 27 O -0.369 6.369 28 O -0.284 6.284 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.557 -5.853 9.629 12.155 hybrid contribution 0.620 0.339 -0.074 0.710 sum -3.937 -5.514 9.555 11.714 Atomic orbital electron populations 1.21716 0.92404 1.03001 1.02811 1.22535 0.95354 0.95924 0.85063 0.91321 1.22085 0.79647 1.01923 0.99303 1.58098 1.16628 1.77944 1.31819 1.01495 0.72374 0.74862 0.71458 1.93522 1.72134 1.86868 1.42251 1.93483 1.42385 1.76078 1.85130 1.29727 1.28809 1.23210 1.05088 1.20163 0.94622 0.94772 0.93722 1.20433 1.12880 0.94270 0.99184 1.20856 0.97207 0.97644 0.93892 1.21421 1.04006 0.95338 0.96553 1.16876 0.83571 0.91806 0.89326 1.19791 1.39295 0.97583 0.91585 0.89979 1.25924 0.92635 0.94059 1.01132 1.69779 1.28738 1.11728 1.29065 0.86263 0.81066 0.80230 0.79018 1.18042 1.19646 1.17983 1.21996 0.99833 0.97909 0.83420 1.22591 0.82781 1.00081 0.92989 0.90730 1.22104 0.97729 0.94152 0.85280 1.86552 1.81760 1.52174 1.16429 1.87944 1.19764 1.77455 1.43237 0.91681 0.91633 0.90586 0.88120 0.90570 0.88650 0.88804 0.88676 0.85931 0.89909 0.90364 0.87829 0.92545 0.91685 0.77576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.57 37.16 0.36 -1.21 16 2 C 0.07 0.98 3.39 -26.58 -0.09 0.89 16 3 H 0.07 1.03 7.38 -51.93 -0.38 0.65 16 4 C 0.10 1.46 5.84 -3.54 -0.02 1.44 16 5 N -1.01 -17.37 2.36 -112.82 -0.27 -17.64 16 6 S 2.70 60.45 4.47 -107.50 -0.48 59.97 16 7 O -0.96 -23.90 15.85 -57.17 -0.91 -24.81 16 8 O -0.98 -23.41 16.64 -57.17 -0.95 -24.36 16 9 C -0.77 -18.79 5.89 -38.87 -0.23 -19.02 16 10 C -0.01 -0.29 9.55 -39.66 -0.38 -0.67 16 11 C -0.25 -5.32 10.05 -39.29 -0.39 -5.71 16 12 C -0.08 -1.74 10.02 -39.66 -0.40 -2.13 16 13 C -0.15 -3.87 8.68 -38.87 -0.34 -4.21 16 14 C 0.19 5.06 5.55 -106.83 -0.59 4.47 16 15 C -0.45 -12.36 7.76 -37.74 -0.29 -12.65 16 16 H 0.08 2.24 6.83 -52.49 -0.36 1.88 16 17 C 0.08 2.12 5.14 -17.34 -0.09 2.03 16 18 N -0.77 -19.22 11.07 55.55 0.61 -18.60 16 19 Si 0.91 18.74 29.59 -169.99 -5.03 13.70 16 20 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C 0.09 1.36 5.82 -3.31 -0.02 1.34 16 24 C 0.08 1.02 2.80 -26.36 -0.07 0.95 16 25 H 0.07 1.11 6.22 -51.93 -0.32 0.78 16 26 C 0.09 0.90 6.72 37.16 0.25 1.15 16 27 O -0.56 -6.28 13.63 -39.97 -0.54 -6.83 16 28 O -0.36 -5.29 9.99 -39.97 -0.40 -5.69 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.60 7.42 -51.93 -0.39 1.21 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.77 4.17 -52.48 -0.22 1.55 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.12 3.09 6.32 -52.49 -0.33 2.76 16 38 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.48 7.09 -51.93 -0.37 1.11 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.38 2.21 9.12 45.56 0.42 2.62 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -33.27 357.60 -9.78 -43.05 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.89 Total: 9.16 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: -2.31 Total: -33.35 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.35 Total: -36.24 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -2.80 Total: -61.69 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.70 kcal Atomic # 16 Polarization: 60.45 SS G_CDS: -0.48 Total: 59.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.27 -9.78 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.968 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds