Wall clock time and date at job start Sat Apr 11 2020 06:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.51317 * 2 1 4 4 C 1.53292 * 109.51368 * 239.89837 * 2 1 3 5 5 N 1.47150 * 108.38745 * 187.77434 * 4 2 1 6 6 S 1.65599 * 120.98390 * 230.51175 * 5 4 2 7 7 O 1.42102 * 106.40181 * 330.72430 * 6 5 4 8 8 O 1.42104 * 106.40346 * 197.80034 * 6 5 4 9 9 C 1.76198 * 107.21819 * 84.26333 * 6 5 4 10 10 C 1.37644 * 120.13170 * 14.79500 * 9 6 5 11 11 C 1.38605 * 120.25155 * 180.25443 * 10 9 6 12 12 C 1.38654 * 120.50350 * 359.76889 * 11 10 9 13 13 C 1.37605 * 120.24793 * 359.96734 * 12 11 10 14 14 C 1.40702 * 120.12992 * 194.53696 * 9 6 5 15 15 C 1.41387 * 120.24084 * 0.02562 * 14 9 6 16 16 H 1.08002 * 120.00347 * 332.76015 * 15 14 9 17 17 C 1.39949 * 120.00153 * 152.75867 * 15 14 9 18 18 N 1.30823 * 119.99937 * 343.13934 * 17 15 14 19 19 Si 1.86800 * 120.00176 * 162.86771 * 17 15 14 20 20 H 1.48508 * 109.47015 * 65.00532 * 19 17 15 21 21 H 1.48499 * 109.47394 * 185.00373 * 19 17 15 22 22 H 1.48497 * 109.47147 * 305.00581 * 19 17 15 23 23 C 1.47159 * 118.03253 * 50.78281 * 5 4 2 24 24 C 1.53710 * 108.16290 * 309.16021 * 23 5 4 25 25 H 1.09006 * 109.65476 * 292.57153 * 24 23 5 26 26 C 1.52996 * 109.48523 * 172.40244 * 24 23 5 27 27 O 1.42900 * 109.47444 * 175.36586 * 26 24 23 28 28 O 1.42957 * 109.14812 * 52.53636 * 24 23 5 29 29 H 1.09003 * 109.47059 * 184.66557 * 1 2 3 30 30 H 1.09001 * 109.47108 * 304.66674 * 1 2 3 31 31 H 1.08999 * 109.47002 * 64.66689 * 1 2 3 32 32 H 1.09000 * 109.68219 * 68.04951 * 4 2 1 33 33 H 1.09000 * 109.71258 * 307.51639 * 4 2 1 34 34 H 1.08010 * 119.87182 * 0.02562 * 10 9 6 35 35 H 1.07999 * 119.74982 * 179.74051 * 11 10 9 36 36 H 1.07997 * 119.88128 * 180.02562 * 12 11 10 37 37 H 1.07994 * 120.12773 * 180.02562 * 13 12 11 38 38 H 0.96995 * 119.99879 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.68486 * 68.94316 * 23 5 4 40 40 H 1.09000 * 109.67986 * 189.49372 * 23 5 4 41 41 H 1.09001 * 109.47371 * 295.36287 * 26 24 23 42 42 H 1.08998 * 109.47416 * 55.36353 * 26 24 23 43 43 H 0.96694 * 114.00531 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 3.5011 -0.8757 -1.1340 6 16 4.5064 -0.4182 -2.3678 7 8 3.7655 -0.5793 -3.5697 8 8 5.7515 -1.0604 -2.1302 9 6 4.7966 1.3107 -2.1903 10 6 4.4792 1.9471 -1.0119 11 6 4.7015 3.3080 -0.8714 12 6 5.2495 4.0427 -1.9118 13 6 5.5795 3.4264 -3.0970 14 6 5.3587 2.0450 -3.2507 15 6 5.6933 1.4011 -4.4641 16 1 5.9433 0.3504 -4.4669 17 6 5.7005 2.1251 -5.6618 18 7 5.0944 3.2824 -5.7301 19 14 6.5819 1.4425 -7.1606 20 1 5.9067 0.1977 -7.6077 21 1 6.5464 2.4454 -8.2552 22 1 7.9933 1.1417 -6.8105 23 6 4.0402 -1.4511 0.1086 24 6 3.4312 -0.6860 1.2945 25 1 3.8030 0.3387 1.2996 26 6 3.8211 -1.3776 2.6024 27 8 3.3465 -0.6074 3.7085 28 8 2.0075 -0.6768 1.1652 29 1 -0.3633 -1.0243 0.0836 30 1 -0.3633 0.5845 0.8452 31 1 -0.3633 0.4397 -0.9288 32 1 1.8030 -0.1389 -2.1377 33 1 1.5758 -1.7073 -1.3222 34 1 4.0518 1.3846 -0.1948 35 1 4.4456 3.8000 0.0554 36 1 5.4189 5.1025 -1.7912 37 1 6.0066 4.0004 -3.9059 38 1 5.0997 3.7844 -6.5600 39 1 3.7718 -2.5056 0.1716 40 1 5.1251 -1.3465 0.1210 41 1 3.3758 -2.3720 2.6344 42 1 4.9063 -1.4635 2.6585 43 1 3.5587 -0.9870 4.5721 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601401770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:27 Heat of formation + Delta-G solvation = -171.605277 kcal Electronic energy + Delta-G solvation = -29346.096273 eV Core-core repulsion = 25289.060671 eV Total energy + Delta-G solvation = -4057.035602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69402 -39.45334 -38.13264 -37.58768 -36.80263 -36.01080 -35.66467 -34.11914 -32.12662 -31.50246 -30.48767 -27.61599 -27.47213 -25.72638 -23.53185 -23.18364 -22.94583 -21.86757 -19.99279 -19.58972 -18.59773 -18.36838 -18.12966 -17.88094 -17.11748 -17.07780 -16.46341 -16.10057 -15.88689 -15.68353 -15.42688 -15.25262 -14.94642 -14.72101 -14.48032 -13.81545 -13.80679 -13.66980 -13.48771 -13.36328 -13.19380 -13.13116 -13.10272 -12.93627 -12.89610 -12.71401 -12.54877 -12.46715 -12.21714 -12.00131 -11.79635 -11.50266 -11.38925 -11.22992 -10.98125 -10.85222 -9.90608 -9.84699 -9.55194 -8.91699 -6.73140 -0.43690 0.47602 0.89081 1.28592 1.40073 1.45446 2.05167 2.10767 2.50401 2.59234 2.85543 3.11600 3.31415 3.60810 3.76496 3.77239 3.91007 3.98891 4.10580 4.27497 4.29897 4.33696 4.38521 4.42017 4.56120 4.58574 4.61142 4.70849 4.80097 4.84895 4.90811 4.95991 5.00034 5.12395 5.20733 5.29385 5.41612 5.45533 5.58979 5.71860 5.91849 5.96622 6.16601 6.35880 6.56323 6.72804 6.97668 8.05993 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.004227 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.810998 B = 6622.562397 C = 7001.360477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.055 0.945 4 C 0.089 3.911 5 N -1.002 6.002 6 S 2.715 3.285 7 O -0.992 6.992 8 O -1.003 7.003 9 C -0.793 4.793 10 C -0.014 4.014 11 C -0.247 4.247 12 C -0.072 4.072 13 C -0.185 4.185 14 C 0.157 3.843 15 C -0.499 4.499 16 H 0.065 0.935 17 C 0.047 3.953 18 N -0.795 5.795 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.245 1.245 22 H -0.252 1.252 23 C 0.087 3.913 24 C 0.072 3.928 25 H 0.059 0.941 26 C 0.088 3.912 27 O -0.587 6.587 28 O -0.368 6.368 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.300 0.700 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 -6.083 12.733 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.036 4.036 5 N -0.841 5.841 6 S 2.812 3.188 7 O -0.982 6.982 8 O -0.993 6.993 9 C -0.886 4.886 10 C -0.033 4.033 11 C -0.266 4.266 12 C -0.091 4.091 13 C -0.205 4.205 14 C 0.152 3.848 15 C -0.527 4.527 16 H 0.083 0.917 17 C -0.173 4.173 18 N -0.418 5.418 19 Si 0.787 3.213 20 H -0.187 1.187 21 H -0.168 1.168 22 H -0.176 1.176 23 C -0.038 4.038 24 C 0.012 3.988 25 H 0.077 0.923 26 C 0.010 3.990 27 O -0.396 6.396 28 O -0.287 6.287 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -5.332 -6.169 11.561 14.147 hybrid contribution 0.773 0.445 -0.433 0.992 sum -4.559 -5.724 11.128 13.319 Atomic orbital electron populations 1.21729 0.90131 1.04023 1.03638 1.22574 0.97091 0.94833 0.84295 0.92701 1.22346 0.78242 1.03286 0.99695 1.57722 1.16985 1.77563 1.31863 1.00800 0.72115 0.74099 0.71737 1.93464 1.72778 1.87032 1.44919 1.93433 1.44036 1.76180 1.85678 1.30137 1.28404 1.24564 1.05501 1.20559 0.93734 0.95421 0.93618 1.20921 1.11278 0.94250 1.00178 1.21251 0.95582 0.99329 0.92924 1.21445 1.06108 0.95159 0.97783 1.17269 0.84377 0.92981 0.90133 1.19917 1.42277 0.97258 0.93231 0.91734 1.26690 0.92933 0.94401 1.03237 1.69776 1.29171 1.12519 1.30360 0.85451 0.79796 0.79836 0.76196 1.18652 1.16812 1.17566 1.22319 0.99889 0.99447 0.82165 1.22689 0.82275 0.99482 0.94322 0.92304 1.22118 0.99081 0.94133 0.83667 1.86478 1.82158 1.53106 1.17855 1.87962 1.20251 1.77325 1.43139 0.90533 0.90986 0.89652 0.89435 0.88308 0.85703 0.85141 0.85504 0.86982 0.88831 0.87645 0.88015 0.90843 0.89569 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.57 71.98 0.69 -2.04 16 2 C 0.07 1.86 3.39 30.69 0.10 1.96 16 3 H 0.05 1.57 7.38 -2.38 -0.02 1.55 16 4 C 0.09 2.61 5.84 86.35 0.50 3.12 16 5 N -1.00 -33.82 2.36 -510.86 -1.21 -35.03 16 6 S 2.71 124.57 4.47 -56.49 -0.25 124.32 16 7 O -0.99 -51.56 15.85 -128.00 -2.03 -53.59 16 8 O -1.00 -49.19 16.64 -128.00 -2.13 -51.32 16 9 C -0.79 -39.39 5.89 22.73 0.13 -39.25 16 10 C -0.01 -0.61 9.55 22.22 0.21 -0.40 16 11 C -0.25 -10.14 10.05 22.46 0.23 -9.91 16 12 C -0.07 -3.19 10.02 22.22 0.22 -2.97 16 13 C -0.19 -9.59 8.68 22.73 0.20 -9.39 16 14 C 0.16 8.72 5.55 -21.29 -0.12 8.61 16 15 C -0.50 -28.52 7.76 23.46 0.18 -28.33 16 16 H 0.06 3.76 6.83 -2.91 -0.02 3.74 16 17 C 0.05 2.43 5.14 85.26 0.44 2.87 16 18 N -0.80 -40.88 11.07 21.83 0.24 -40.64 16 19 Si 0.97 39.23 29.59 68.60 2.03 41.26 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 22 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 23 C 0.09 2.33 5.82 86.49 0.50 2.83 16 24 C 0.07 1.79 2.80 30.83 0.09 1.87 16 25 H 0.06 1.63 6.22 -2.38 -0.01 1.62 16 26 C 0.09 1.57 6.72 71.98 0.48 2.05 16 27 O -0.59 -11.33 13.63 -144.45 -1.97 -13.30 16 28 O -0.37 -9.73 9.99 -144.45 -1.44 -11.18 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 2.79 7.42 -2.39 -0.02 2.78 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.13 4.48 4.17 -2.91 -0.01 4.47 16 35 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 37 H 0.11 5.90 6.32 -2.91 -0.02 5.88 16 38 H 0.30 13.61 8.30 -92.71 -0.77 12.84 16 39 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.10 2.77 7.09 -2.39 -0.02 2.76 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.40 3.44 9.12 -74.06 -0.68 2.76 16 Total: -1.00 -74.73 357.60 -2.52 -77.25 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.38 Total: 31.19 kcal Atomic # 6 Polarization: -72.84 SS G_CDS: 3.86 Total: -68.98 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -0.97 Total: -75.66 kcal Atomic # 8 Polarization: -121.80 SS G_CDS: -7.57 Total: -129.37 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 124.57 SS G_CDS: -0.25 Total: 124.32 kcal Total: -74.73 -2.52 -77.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601401770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.355 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds