Wall clock time and date at job start Sat Apr 11 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.87330 * 2 1 4 4 O 1.43894 * 109.94948 * 121.02539 * 2 1 3 5 5 C 1.44375 * 106.89995 * 145.77986 * 4 2 1 6 6 C 1.54995 * 103.63273 * 320.15450 * 5 4 2 7 7 C 1.54104 * 109.87263 * 238.99186 * 2 1 3 8 8 O 1.42900 * 110.48524 * 119.87667 * 7 2 1 9 9 C 1.52990 * 110.60519 * 357.28185 * 7 2 1 10 10 N 1.46503 * 109.47518 * 186.41137 * 9 7 2 11 11 S 1.65599 * 120.00025 * 162.41408 * 10 9 7 12 12 O 1.42100 * 106.39962 * 179.46884 * 11 10 9 13 13 O 1.42105 * 106.40236 * 312.38556 * 11 10 9 14 14 C 1.76202 * 107.22086 * 65.92818 * 11 10 9 15 15 C 1.37627 * 120.12858 * 245.37320 * 14 11 10 16 16 C 1.38616 * 120.24822 * 180.02562 * 15 14 11 17 17 C 1.38649 * 120.50148 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.25022 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12249 * 65.09537 * 14 11 10 20 20 C 1.41391 * 120.24967 * 359.97438 * 19 14 11 21 21 H 1.07998 * 119.99873 * 329.16538 * 20 19 14 22 22 C 1.39947 * 120.00455 * 149.15659 * 20 19 14 23 23 N 1.30829 * 119.99708 * 344.38620 * 22 20 19 24 24 Si 1.86796 * 120.00349 * 164.38358 * 22 20 19 25 25 H 1.48496 * 109.47136 * 94.97908 * 24 22 20 26 26 H 1.48498 * 109.47330 * 214.98343 * 24 22 20 27 27 H 1.48508 * 109.47051 * 334.98148 * 24 22 20 28 28 H 1.08997 * 109.47624 * 184.76280 * 1 2 3 29 29 H 1.09003 * 109.46521 * 304.76041 * 1 2 3 30 30 H 1.09000 * 109.47367 * 64.75160 * 1 2 3 31 31 H 1.09001 * 110.61791 * 201.57890 * 5 4 2 32 32 H 1.08995 * 110.61883 * 78.74127 * 5 4 2 33 33 H 1.08996 * 110.90943 * 155.13971 * 6 5 4 34 34 H 1.08992 * 110.91178 * 278.74766 * 6 5 4 35 35 H 0.96704 * 114.00325 * 176.22244 * 8 7 2 36 36 H 1.09001 * 109.47274 * 306.41469 * 9 7 2 37 37 H 1.09004 * 109.47169 * 66.40812 * 9 7 2 38 38 H 0.96997 * 119.99474 * 342.41111 * 10 9 7 39 39 H 1.08006 * 119.87810 * 359.97438 * 15 14 11 40 40 H 1.08003 * 119.74779 * 179.97438 * 16 15 14 41 41 H 1.08006 * 119.87636 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.13199 * 179.97438 * 18 17 16 43 43 H 0.97003 * 119.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0210 -0.6971 1.1591 5 6 3.2379 -1.3653 0.7628 6 6 2.9194 -1.8907 -0.6602 7 6 2.0538 -0.7466 -1.2422 8 8 2.8510 0.1227 -2.0490 9 6 0.8916 -1.3162 -2.0579 10 7 1.4180 -2.1471 -3.1437 11 16 0.4280 -3.2291 -3.9127 12 8 1.2209 -3.8608 -4.9085 13 8 -0.2535 -3.9453 -2.8919 14 6 -0.7975 -2.2972 -4.7697 15 6 -2.1197 -2.3889 -4.3991 16 6 -3.0859 -1.6573 -5.0720 17 6 -2.7333 -0.8256 -6.1237 18 6 -1.4174 -0.7182 -6.5115 19 6 -0.4272 -1.4519 -5.8318 20 6 0.9290 -1.3447 -6.2172 21 1 1.7105 -1.4648 -5.4816 22 6 1.2586 -1.0831 -7.5519 23 7 0.3600 -1.2382 -8.4901 24 14 2.9815 -0.5126 -7.9940 25 1 3.8043 -1.6835 -8.3902 26 1 2.9101 0.4476 -9.1246 27 1 3.5997 0.1520 -6.8186 28 1 -0.3634 -1.0240 0.0853 29 1 -0.3632 0.5860 0.8443 30 1 -0.3634 0.4383 -0.9295 31 1 3.4584 -2.1929 1.4370 32 1 4.0703 -0.6622 0.7350 33 1 3.8329 -2.0209 -1.2403 34 1 2.3538 -2.8213 -0.6138 35 1 3.2540 -0.3102 -2.8140 36 1 0.2567 -1.9222 -1.4116 37 1 0.3068 -0.4976 -2.4776 38 1 2.3463 -2.0633 -3.4120 39 1 -2.4058 -3.0341 -3.5815 40 1 -4.1212 -1.7358 -4.7746 41 1 -3.4944 -0.2604 -6.6412 42 1 -1.1449 -0.0701 -7.3312 43 1 0.5884 -1.0565 -9.4152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601406321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:34 Heat of formation + Delta-G solvation = -152.002065 kcal Electronic energy + Delta-G solvation = -29312.004207 eV Core-core repulsion = 25255.818664 eV Total energy + Delta-G solvation = -4056.185543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.34790 -37.64558 -36.71203 -36.29127 -34.91553 -34.25650 -33.88859 -32.02069 -30.93384 -30.26643 -29.63986 -26.31367 -25.57744 -24.64208 -22.53375 -21.70985 -21.21263 -19.96973 -18.85492 -17.76149 -17.50627 -17.08600 -16.33417 -16.09264 -15.66191 -15.53769 -15.39831 -15.12324 -14.45626 -14.28560 -14.11370 -13.56311 -13.37768 -13.22230 -12.85734 -12.78930 -12.54804 -12.28200 -12.13329 -11.91517 -11.65284 -11.58945 -11.45030 -11.32912 -11.30913 -11.22492 -11.17176 -11.07944 -10.79643 -10.60387 -10.51637 -10.08765 -9.93466 -9.76835 -9.54986 -9.45084 -8.89307 -8.09011 -7.65902 -7.10246 -4.80422 1.42941 2.28471 2.67886 2.93252 2.95712 3.06454 3.66939 3.72515 3.79608 3.91520 4.33988 4.37083 4.49028 4.68007 4.77033 4.99077 5.10607 5.19996 5.25002 5.37784 5.45542 5.51748 5.55310 5.62197 5.73749 5.81625 5.85921 5.97878 5.99901 6.15941 6.18104 6.19600 6.35594 6.69886 6.72194 6.85844 7.01659 7.23941 7.32048 7.44038 7.54444 7.58312 7.74587 7.83059 8.21348 8.44627 8.58530 9.85610 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.004959 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.073067 B = 5644.662922 C = 6593.065659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.090 3.910 3 H 0.083 0.917 4 O -0.370 6.370 5 C 0.050 3.950 6 C -0.184 4.184 7 C 0.100 3.900 8 O -0.547 6.547 9 C 0.103 3.897 10 N -1.123 6.123 11 S 2.701 3.299 12 O -0.961 6.961 13 O -0.996 6.996 14 C -0.775 4.775 15 C -0.003 4.003 16 C -0.249 4.249 17 C -0.075 4.075 18 C -0.157 4.157 19 C 0.191 3.809 20 C -0.450 4.450 21 H 0.086 0.914 22 C 0.083 3.917 23 N -0.772 5.772 24 Si 0.912 3.088 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.255 1.255 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.382 0.618 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.406 0.594 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 3.423 10.220 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 H 0.101 0.899 4 O -0.290 6.290 5 C -0.027 4.027 6 C -0.221 4.221 7 C 0.057 3.943 8 O -0.354 6.354 9 C -0.024 4.024 10 N -0.880 5.880 11 S 2.799 3.201 12 O -0.952 6.952 13 O -0.987 6.987 14 C -0.871 4.871 15 C -0.023 4.023 16 C -0.269 4.269 17 C -0.094 4.094 18 C -0.177 4.177 19 C 0.186 3.814 20 C -0.478 4.478 21 H 0.104 0.896 22 C -0.139 4.139 23 N -0.395 5.395 24 Si 0.735 3.265 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.178 1.178 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.231 0.769 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.239 0.761 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.135 0.865 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.273 2.910 10.730 11.911 hybrid contribution 0.952 0.492 -1.510 1.852 sum 5.226 3.403 9.220 11.131 Atomic orbital electron populations 1.22117 0.92730 1.03729 1.03297 1.22570 0.95349 0.96198 0.82683 0.89878 1.88943 1.39885 1.67767 1.32388 1.23480 0.87824 0.96362 0.95005 1.23851 1.01167 0.99715 0.97414 1.22705 0.90625 0.89532 0.91433 1.86518 1.67645 1.39007 1.42241 1.21999 0.95958 0.95549 0.88885 1.55756 1.24109 1.59391 1.48711 1.01089 0.73437 0.73013 0.72566 1.93554 1.69415 1.73417 1.58789 1.93451 1.75421 1.70478 1.59311 1.29855 1.10038 1.25992 1.21170 1.20265 0.91743 0.94449 0.95837 1.20489 0.97457 1.06295 1.02673 1.20890 0.95965 0.96910 0.95601 1.21366 0.92176 1.02199 1.01947 1.16969 0.93151 0.84669 0.86620 1.19759 0.92295 1.41124 0.94648 0.89595 1.25924 1.00099 0.91927 0.95965 1.69796 1.35965 1.31537 1.02192 0.86212 0.81308 0.79503 0.79460 1.18861 1.19724 1.17836 0.90932 0.91460 0.90077 0.88857 0.91943 0.89410 0.88898 0.76902 0.89017 0.90200 0.76117 0.87394 0.88660 0.88766 0.86473 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.40 37.16 0.31 -1.51 16 2 C 0.09 1.10 3.88 -26.15 -0.10 1.00 16 3 H 0.08 1.02 7.97 -51.93 -0.41 0.60 16 4 O -0.37 -4.73 11.20 -35.23 -0.39 -5.12 16 5 C 0.05 0.52 7.71 38.21 0.29 0.81 16 6 C -0.18 -2.00 6.00 -24.72 -0.15 -2.15 16 7 C 0.10 1.23 1.08 -89.09 -0.10 1.13 16 8 O -0.55 -6.85 12.97 -35.23 -0.46 -7.31 16 9 C 0.10 1.46 4.13 -4.05 -0.02 1.44 16 10 N -1.12 -17.77 4.70 -10.61 -0.05 -17.82 16 11 S 2.70 56.03 4.97 -107.50 -0.53 55.49 16 12 O -0.96 -22.96 16.61 -57.17 -0.95 -23.91 16 13 O -1.00 -21.60 16.37 -57.17 -0.94 -22.54 16 14 C -0.78 -17.84 5.95 -38.88 -0.23 -18.08 16 15 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 16 C -0.25 -5.28 10.05 -39.29 -0.39 -5.67 16 17 C -0.07 -1.63 10.02 -39.66 -0.40 -2.03 16 18 C -0.16 -3.77 8.66 -38.87 -0.34 -4.11 16 19 C 0.19 4.68 5.50 -106.82 -0.59 4.09 16 20 C -0.45 -10.80 7.55 -37.74 -0.28 -11.08 16 21 H 0.09 1.87 5.86 -52.49 -0.31 1.56 16 22 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 23 N -0.77 -18.67 11.25 55.55 0.62 -18.04 16 24 Si 0.91 17.27 29.59 -169.99 -5.03 12.24 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 26 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 27 H -0.25 -4.57 7.11 56.52 0.40 -4.17 16 28 H 0.07 0.83 6.79 -51.93 -0.35 0.48 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.89 6.78 -51.93 -0.35 0.54 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.09 1.08 7.87 -51.93 -0.41 0.67 16 35 H 0.38 3.92 7.94 45.56 0.36 4.28 16 36 H 0.09 1.31 6.08 -51.93 -0.32 0.99 16 37 H 0.08 1.17 7.02 -51.93 -0.36 0.81 16 38 H 0.41 5.50 7.23 -34.47 -0.25 5.25 16 39 H 0.11 2.19 7.33 -52.48 -0.38 1.80 16 40 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 41 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 42 H 0.12 2.84 6.55 -52.49 -0.34 2.49 16 43 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -30.92 356.94 -9.60 -40.52 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -4.80 Total: 15.87 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: -2.46 Total: -34.75 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.58 Total: -35.87 kcal Atomic # 8 Polarization: -56.15 SS G_CDS: -2.74 Total: -58.89 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 16 Polarization: 56.03 SS G_CDS: -0.53 Total: 55.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.92 -9.60 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601406321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.484 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds