Wall clock time and date at job start Sat Apr 11 2020 06:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.87330 * 2 1 4 4 O 1.43894 * 109.94948 * 121.02539 * 2 1 3 5 5 C 1.44375 * 106.89995 * 145.77986 * 4 2 1 6 6 C 1.54995 * 103.63273 * 320.15450 * 5 4 2 7 7 C 1.54104 * 109.87263 * 238.99186 * 2 1 3 8 8 O 1.42900 * 110.48524 * 119.87667 * 7 2 1 9 9 C 1.52990 * 110.60519 * 357.28185 * 7 2 1 10 10 N 1.46503 * 109.47518 * 186.41137 * 9 7 2 11 11 S 1.65599 * 120.00025 * 162.41408 * 10 9 7 12 12 O 1.42100 * 106.39962 * 179.46884 * 11 10 9 13 13 O 1.42105 * 106.40236 * 312.38556 * 11 10 9 14 14 C 1.76202 * 107.22086 * 65.92818 * 11 10 9 15 15 C 1.37627 * 120.12858 * 245.37320 * 14 11 10 16 16 C 1.38616 * 120.24822 * 180.02562 * 15 14 11 17 17 C 1.38649 * 120.50148 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.25022 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12249 * 65.09537 * 14 11 10 20 20 C 1.41391 * 120.24967 * 359.97438 * 19 14 11 21 21 H 1.07998 * 119.99873 * 329.16538 * 20 19 14 22 22 C 1.39947 * 120.00455 * 149.15659 * 20 19 14 23 23 N 1.30829 * 119.99708 * 344.38620 * 22 20 19 24 24 Si 1.86796 * 120.00349 * 164.38358 * 22 20 19 25 25 H 1.48496 * 109.47136 * 94.97908 * 24 22 20 26 26 H 1.48498 * 109.47330 * 214.98343 * 24 22 20 27 27 H 1.48508 * 109.47051 * 334.98148 * 24 22 20 28 28 H 1.08997 * 109.47624 * 184.76280 * 1 2 3 29 29 H 1.09003 * 109.46521 * 304.76041 * 1 2 3 30 30 H 1.09000 * 109.47367 * 64.75160 * 1 2 3 31 31 H 1.09001 * 110.61791 * 201.57890 * 5 4 2 32 32 H 1.08995 * 110.61883 * 78.74127 * 5 4 2 33 33 H 1.08996 * 110.90943 * 155.13971 * 6 5 4 34 34 H 1.08992 * 110.91178 * 278.74766 * 6 5 4 35 35 H 0.96704 * 114.00325 * 176.22244 * 8 7 2 36 36 H 1.09001 * 109.47274 * 306.41469 * 9 7 2 37 37 H 1.09004 * 109.47169 * 66.40812 * 9 7 2 38 38 H 0.96997 * 119.99474 * 342.41111 * 10 9 7 39 39 H 1.08006 * 119.87810 * 359.97438 * 15 14 11 40 40 H 1.08003 * 119.74779 * 179.97438 * 16 15 14 41 41 H 1.08006 * 119.87636 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.13199 * 179.97438 * 18 17 16 43 43 H 0.97003 * 119.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0210 -0.6971 1.1591 5 6 3.2379 -1.3653 0.7628 6 6 2.9194 -1.8907 -0.6602 7 6 2.0538 -0.7466 -1.2422 8 8 2.8510 0.1227 -2.0490 9 6 0.8916 -1.3162 -2.0579 10 7 1.4180 -2.1471 -3.1437 11 16 0.4280 -3.2291 -3.9127 12 8 1.2209 -3.8608 -4.9085 13 8 -0.2535 -3.9453 -2.8919 14 6 -0.7975 -2.2972 -4.7697 15 6 -2.1197 -2.3889 -4.3991 16 6 -3.0859 -1.6573 -5.0720 17 6 -2.7333 -0.8256 -6.1237 18 6 -1.4174 -0.7182 -6.5115 19 6 -0.4272 -1.4519 -5.8318 20 6 0.9290 -1.3447 -6.2172 21 1 1.7105 -1.4648 -5.4816 22 6 1.2586 -1.0831 -7.5519 23 7 0.3600 -1.2382 -8.4901 24 14 2.9815 -0.5126 -7.9940 25 1 3.8043 -1.6835 -8.3902 26 1 2.9101 0.4476 -9.1246 27 1 3.5997 0.1520 -6.8186 28 1 -0.3634 -1.0240 0.0853 29 1 -0.3632 0.5860 0.8443 30 1 -0.3634 0.4383 -0.9295 31 1 3.4584 -2.1929 1.4370 32 1 4.0703 -0.6622 0.7350 33 1 3.8329 -2.0209 -1.2403 34 1 2.3538 -2.8213 -0.6138 35 1 3.2540 -0.3102 -2.8140 36 1 0.2567 -1.9222 -1.4116 37 1 0.3068 -0.4976 -2.4776 38 1 2.3463 -2.0633 -3.4120 39 1 -2.4058 -3.0341 -3.5815 40 1 -4.1212 -1.7358 -4.7746 41 1 -3.4944 -0.2604 -6.6412 42 1 -1.1449 -0.0701 -7.3312 43 1 0.5884 -1.0565 -9.4152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601406321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:33 Heat of formation + Delta-G solvation = -175.840379 kcal Electronic energy + Delta-G solvation = -29313.037914 eV Core-core repulsion = 25255.818664 eV Total energy + Delta-G solvation = -4057.219250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29745 -39.37243 -38.06391 -37.69074 -36.67918 -35.69191 -35.37138 -32.98487 -32.05994 -31.81775 -31.38081 -27.44899 -27.23129 -25.65837 -23.50913 -23.32928 -22.95527 -20.98710 -20.38354 -19.49752 -18.68447 -18.53123 -17.77620 -17.30463 -17.05891 -16.77844 -16.52851 -16.28581 -16.03261 -15.75903 -15.27661 -15.08884 -14.91924 -14.51960 -14.44127 -13.85501 -13.71941 -13.46392 -13.33873 -13.24330 -13.05490 -12.99810 -12.95881 -12.88401 -12.84578 -12.77821 -12.50387 -12.47130 -12.19637 -12.14315 -11.63099 -11.48622 -11.21248 -11.14215 -11.04700 -10.68822 -10.30516 -9.83674 -9.42882 -8.80982 -6.59262 -0.19990 0.53481 0.97513 1.38689 1.49631 1.54589 2.16492 2.28394 2.63708 2.82365 2.95940 2.99232 3.39046 3.48028 3.52372 3.83980 3.87228 4.11840 4.22620 4.31670 4.32755 4.36628 4.48975 4.50762 4.64494 4.68262 4.72389 4.76154 4.83753 4.97049 5.00692 5.04000 5.08901 5.12208 5.28267 5.29741 5.52529 5.70655 5.79049 5.82557 5.99800 6.07857 6.11976 6.46701 6.66685 6.68412 6.83535 8.17990 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011553 B = 0.004959 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.073067 B = 5644.662922 C = 6593.065659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.089 3.911 3 H 0.083 0.917 4 O -0.386 6.386 5 C 0.047 3.953 6 C -0.184 4.184 7 C 0.105 3.895 8 O -0.555 6.555 9 C 0.100 3.900 10 N -1.107 6.107 11 S 2.724 3.276 12 O -0.995 6.995 13 O -1.006 7.006 14 C -0.793 4.793 15 C -0.016 4.016 16 C -0.250 4.250 17 C -0.075 4.075 18 C -0.186 4.186 19 C 0.166 3.834 20 C -0.477 4.477 21 H 0.099 0.901 22 C 0.040 3.960 23 N -0.809 5.809 24 Si 0.973 3.027 25 H -0.267 1.267 26 H -0.265 1.265 27 H -0.237 1.237 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.391 0.609 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.418 0.582 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 3.937 11.312 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.030 3.970 3 H 0.101 0.899 4 O -0.306 6.306 5 C -0.029 4.029 6 C -0.222 4.222 7 C 0.062 3.938 8 O -0.363 6.363 9 C -0.026 4.026 10 N -0.868 5.868 11 S 2.820 3.180 12 O -0.986 6.986 13 O -0.997 6.997 14 C -0.887 4.887 15 C -0.036 4.036 16 C -0.270 4.270 17 C -0.094 4.094 18 C -0.205 4.205 19 C 0.162 3.838 20 C -0.505 4.505 21 H 0.116 0.884 22 C -0.178 4.178 23 N -0.433 5.433 24 Si 0.793 3.207 25 H -0.192 1.192 26 H -0.189 1.189 27 H -0.159 1.159 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.241 0.759 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.254 0.746 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.135 3.430 11.815 13.332 hybrid contribution 0.586 0.311 -1.772 1.892 sum 5.721 3.742 10.043 12.149 Atomic orbital electron populations 1.22131 0.92391 1.03667 1.03806 1.22593 0.95751 0.96088 0.82540 0.89935 1.88928 1.40902 1.68034 1.32698 1.23660 0.87279 0.97022 0.94939 1.23882 1.01573 0.98695 0.98060 1.22632 0.90101 0.90016 0.91084 1.86509 1.67580 1.39455 1.42770 1.22148 0.96963 0.95062 0.88403 1.55265 1.24110 1.58923 1.48506 1.00266 0.72920 0.72873 0.71896 1.93503 1.70043 1.74696 1.60331 1.93431 1.75915 1.71096 1.59218 1.30205 1.11404 1.25662 1.21399 1.20596 0.91720 0.94838 0.96405 1.20881 0.98936 1.05310 1.01894 1.21229 0.95800 0.96755 0.95570 1.21431 0.93399 1.03143 1.02576 1.17287 0.93870 0.85270 0.87388 1.20107 0.92618 1.42228 0.95572 0.88361 1.26823 1.03907 0.91478 0.95633 1.69847 1.38000 1.32637 1.02782 0.85305 0.76467 0.79009 0.79951 1.19233 1.18918 1.15930 0.91367 0.90345 0.90120 0.87111 0.90967 0.87564 0.89610 0.75852 0.88998 0.90755 0.74581 0.85901 0.85536 0.86098 0.87661 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.40 71.98 0.60 -2.89 16 2 C 0.09 2.04 3.88 30.97 0.12 2.16 16 3 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 4 O -0.39 -9.18 11.20 -148.98 -1.67 -10.85 16 5 C 0.05 0.87 7.71 72.66 0.56 1.43 16 6 C -0.18 -3.63 6.00 31.90 0.19 -3.44 16 7 C 0.10 2.41 1.08 -9.80 -0.01 2.40 16 8 O -0.55 -12.84 12.97 -148.98 -1.93 -14.78 16 9 C 0.10 2.75 4.13 86.38 0.36 3.11 16 10 N -1.11 -33.99 4.70 -187.49 -0.88 -34.87 16 11 S 2.72 112.13 4.97 -56.49 -0.28 111.85 16 12 O -1.00 -47.68 16.61 -128.00 -2.13 -49.80 16 13 O -1.01 -42.94 16.37 -128.00 -2.10 -45.03 16 14 C -0.79 -36.55 5.95 22.73 0.14 -36.42 16 15 C -0.02 -0.69 9.53 22.22 0.21 -0.48 16 16 C -0.25 -10.26 10.05 22.46 0.23 -10.04 16 17 C -0.07 -3.22 10.02 22.22 0.22 -2.99 16 18 C -0.19 -9.05 8.66 22.73 0.20 -8.85 16 19 C 0.17 8.27 5.50 -21.29 -0.12 8.16 16 20 C -0.48 -23.09 7.55 23.46 0.18 -22.91 16 21 H 0.10 4.27 5.86 -2.91 -0.02 4.25 16 22 C 0.04 1.87 5.14 85.26 0.44 2.31 16 23 N -0.81 -39.91 11.25 21.83 0.25 -39.67 16 24 Si 0.97 34.87 29.59 68.60 2.03 36.90 16 25 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 26 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 27 H -0.24 -7.69 7.11 99.48 0.71 -6.98 16 28 H 0.07 1.51 6.79 -2.39 -0.02 1.49 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.71 6.78 -2.39 -0.02 1.70 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 34 H 0.09 1.83 7.87 -2.39 -0.02 1.81 16 35 H 0.39 7.20 7.94 -74.05 -0.59 6.62 16 36 H 0.09 2.54 6.08 -2.39 -0.01 2.52 16 37 H 0.07 2.14 7.02 -2.39 -0.02 2.12 16 38 H 0.42 10.75 7.23 -96.75 -0.70 10.05 16 39 H 0.12 4.84 7.33 -2.91 -0.02 4.82 16 40 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.11 5.27 6.55 -2.91 -0.02 5.25 16 43 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 Total: -1.00 -65.96 356.94 -3.62 -69.58 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.22 Total: 45.12 kcal Atomic # 6 Polarization: -71.78 SS G_CDS: 3.31 Total: -68.46 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -0.64 Total: -74.53 kcal Atomic # 8 Polarization: -112.64 SS G_CDS: -7.82 Total: -120.46 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Atomic # 16 Polarization: 112.13 SS G_CDS: -0.28 Total: 111.85 kcal Total: -65.96 -3.62 -69.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601406321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.265 kcal (2) G-P(sol) polarization free energy of solvation -65.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds