Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99136 * 2 1 4 4 O 1.44047 * 109.92242 * 238.75201 * 2 1 3 5 5 C 1.44382 * 106.98057 * 214.02105 * 4 2 1 6 6 C 1.55000 * 103.48846 * 40.14028 * 5 4 2 7 7 C 1.54096 * 109.87768 * 121.08630 * 2 1 3 8 8 O 1.42901 * 110.49063 * 240.25986 * 7 2 1 9 9 C 1.53002 * 110.49292 * 2.77529 * 7 2 1 10 10 N 1.46491 * 109.47677 * 173.58871 * 9 7 2 11 11 S 1.65601 * 120.00351 * 164.94387 * 10 9 7 12 12 O 1.42096 * 106.40058 * 313.25665 * 11 10 9 13 13 O 1.42099 * 106.40303 * 180.33683 * 11 10 9 14 14 C 1.76194 * 107.21570 * 66.79752 * 11 10 9 15 15 C 1.37647 * 120.12684 * 245.75563 * 14 11 10 16 16 C 1.38610 * 120.24671 * 180.26100 * 15 14 11 17 17 C 1.38655 * 120.50478 * 359.73855 * 16 15 14 18 18 C 1.37599 * 120.24595 * 0.02562 * 17 16 15 19 19 C 1.40693 * 120.13041 * 65.50052 * 14 11 10 20 20 C 1.41395 * 120.24438 * 0.02562 * 19 14 11 21 21 H 1.08003 * 119.99620 * 332.51587 * 20 19 14 22 22 C 1.39939 * 120.00054 * 152.24293 * 20 19 14 23 23 N 1.30828 * 120.00023 * 346.59296 * 22 20 19 24 24 Si 1.86799 * 120.00141 * 166.59939 * 22 20 19 25 25 H 1.48502 * 109.47127 * 64.99485 * 24 22 20 26 26 H 1.48500 * 109.47325 * 184.99900 * 24 22 20 27 27 H 1.48501 * 109.46739 * 304.99765 * 24 22 20 28 28 H 1.09003 * 109.47144 * 293.62982 * 1 2 3 29 29 H 1.08997 * 109.47202 * 53.62647 * 1 2 3 30 30 H 1.08996 * 109.47355 * 173.63048 * 1 2 3 31 31 H 1.08993 * 110.62028 * 281.64313 * 5 4 2 32 32 H 1.08999 * 110.61757 * 158.64138 * 5 4 2 33 33 H 1.08997 * 110.90813 * 204.77739 * 6 5 4 34 34 H 1.09007 * 110.93655 * 81.18650 * 6 5 4 35 35 H 0.96694 * 114.00489 * 181.84736 * 8 7 2 36 36 H 1.09003 * 109.46446 * 53.58375 * 9 7 2 37 37 H 1.08996 * 109.46731 * 293.59225 * 9 7 2 38 38 H 0.97010 * 120.00002 * 344.94268 * 10 9 7 39 39 H 1.07997 * 119.87691 * 0.02562 * 15 14 11 40 40 H 1.08010 * 119.74598 * 179.72058 * 16 15 14 41 41 H 1.08001 * 119.87686 * 180.02562 * 17 16 15 42 42 H 1.07996 * 120.12747 * 180.02562 * 18 17 16 43 43 H 0.97008 * 119.99599 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0208 -0.7025 -1.1578 5 6 3.2405 -1.3664 -0.7625 6 6 2.9216 -1.8914 0.6605 7 6 2.0539 -0.7482 1.2410 8 8 2.8485 0.1208 2.0507 9 6 0.8899 -1.3191 2.0534 10 7 1.4137 -2.1520 3.1387 11 16 0.4271 -2.5946 4.3930 12 8 -0.2523 -1.4163 4.8041 13 8 1.2220 -3.3798 5.2709 14 6 -0.8009 -3.6732 3.7349 15 6 -2.1221 -3.2874 3.7183 16 6 -3.0909 -4.1361 3.2062 17 6 -2.7417 -5.3790 2.7004 18 6 -1.4266 -5.7835 2.7024 19 6 -0.4342 -4.9298 3.2194 20 6 0.9204 -5.3349 3.2267 21 1 1.7057 -4.5941 3.1936 22 6 1.2437 -6.6953 3.2825 23 7 0.3244 -7.5740 3.5899 24 14 2.9877 -7.2567 2.9183 25 1 3.9063 -6.7232 3.9560 26 1 3.0417 -8.7407 2.9250 27 1 3.4016 -6.7523 1.5843 28 1 -0.3633 0.4119 0.9415 29 1 -0.3633 0.6094 -0.8274 30 1 -0.3634 -1.0213 -0.1140 31 1 4.0701 -0.6600 -0.7339 32 1 3.4627 -2.1940 -1.4362 33 1 3.8348 -2.0201 1.2414 34 1 2.3574 -2.8230 0.6146 35 1 3.2275 -0.3060 2.8312 36 1 0.2562 -1.9238 1.4046 37 1 0.3043 -0.5012 2.4733 38 1 2.3386 -2.4443 3.1227 39 1 -2.4054 -2.3213 4.1093 40 1 -4.1259 -3.8270 3.2013 41 1 -3.5049 -6.0320 2.3034 42 1 -1.1567 -6.7518 2.3076 43 1 0.5487 -8.5170 3.6290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601406322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -175.781728 kcal Electronic energy + Delta-G solvation = -29436.789127 eV Core-core repulsion = 25379.572420 eV Total energy + Delta-G solvation = -4057.216706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28852 -39.37305 -38.07643 -37.65900 -36.68288 -35.72342 -35.40151 -32.98746 -32.04212 -31.80986 -31.34573 -27.45817 -27.23806 -25.67722 -23.48417 -23.38372 -22.94381 -20.96877 -20.32533 -19.51200 -18.69459 -18.45890 -17.85441 -17.21660 -17.06844 -16.81127 -16.55154 -16.31078 -16.03192 -15.74561 -15.28382 -15.08964 -14.91098 -14.49620 -14.45350 -13.92461 -13.67433 -13.45240 -13.33054 -13.22430 -13.07048 -13.00707 -12.93458 -12.88610 -12.83628 -12.76537 -12.49609 -12.47753 -12.18111 -12.15991 -11.66536 -11.53707 -11.17679 -11.14944 -11.02985 -10.70407 -10.30320 -9.83683 -9.44263 -8.80481 -6.61051 -0.19904 0.53823 0.98261 1.36800 1.48197 1.53131 2.14924 2.28590 2.62989 2.81673 2.95776 3.01407 3.37897 3.48295 3.52756 3.81834 3.90576 4.09876 4.21595 4.32959 4.34184 4.42481 4.50206 4.55473 4.59555 4.68513 4.71837 4.74852 4.84362 4.96774 5.01120 5.05658 5.07909 5.14762 5.28581 5.30289 5.51943 5.71119 5.81340 5.83734 6.01460 6.07236 6.12249 6.47317 6.65648 6.66694 6.84184 8.15542 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010068 B = 0.005465 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.338052 B = 5122.463378 C = 6042.491707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.089 3.911 3 H 0.086 0.914 4 O -0.388 6.388 5 C 0.049 3.951 6 C -0.189 4.189 7 C 0.107 3.893 8 O -0.554 6.554 9 C 0.100 3.900 10 N -1.109 6.109 11 S 2.724 3.276 12 O -1.007 7.007 13 O -0.996 6.996 14 C -0.795 4.795 15 C -0.016 4.016 16 C -0.252 4.252 17 C -0.076 4.076 18 C -0.187 4.187 19 C 0.162 3.838 20 C -0.471 4.471 21 H 0.096 0.904 22 C 0.039 3.961 23 N -0.807 5.807 24 Si 0.973 3.027 25 H -0.260 1.260 26 H -0.266 1.266 27 H -0.241 1.241 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.391 0.609 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.419 0.581 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 8.033 -7.946 12.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 H 0.104 0.896 4 O -0.307 6.307 5 C -0.027 4.027 6 C -0.227 4.227 7 C 0.064 3.936 8 O -0.363 6.363 9 C -0.026 4.026 10 N -0.870 5.870 11 S 2.820 3.180 12 O -0.997 6.997 13 O -0.986 6.986 14 C -0.889 4.889 15 C -0.035 4.035 16 C -0.272 4.272 17 C -0.095 4.095 18 C -0.207 4.207 19 C 0.158 3.842 20 C -0.499 4.499 21 H 0.114 0.886 22 C -0.180 4.180 23 N -0.431 5.431 24 Si 0.792 3.208 25 H -0.184 1.184 26 H -0.190 1.190 27 H -0.164 1.164 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.104 0.896 35 H 0.242 0.758 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.255 0.745 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.261 8.569 -7.672 12.647 hybrid contribution 0.565 -1.644 0.283 1.761 sum 5.825 6.925 -7.388 11.682 Atomic orbital electron populations 1.22133 0.92406 1.03560 1.03882 1.22644 0.95724 0.96072 0.82482 0.89596 1.88951 1.40716 1.68025 1.33046 1.23635 0.87242 0.96956 0.94896 1.23912 1.01664 0.98874 0.98204 1.22612 0.89980 0.89954 0.91092 1.86473 1.68591 1.39991 1.41203 1.22170 0.97010 0.94416 0.89052 1.55318 1.24750 1.66365 1.40526 1.00272 0.72929 0.72139 0.72634 1.93430 1.75985 1.48926 1.81338 1.93504 1.69975 1.71427 1.63726 1.30170 1.11473 1.15366 1.31887 1.20575 0.91715 0.97999 0.93234 1.20878 0.98872 0.96465 1.10965 1.21238 0.95915 0.95758 0.96563 1.21563 0.93212 1.00925 1.05006 1.17302 0.93879 0.88921 0.84139 1.20101 0.92606 0.93959 1.43228 0.88628 1.26835 1.04135 0.96164 0.90828 1.69832 1.37554 1.04538 1.31137 0.85369 0.76376 0.78206 0.80876 1.18425 1.19046 1.16378 0.89820 0.90344 0.91709 0.90780 0.87507 0.87501 0.89567 0.75834 0.90374 0.89337 0.74456 0.85975 0.85651 0.86200 0.86906 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.40 71.98 0.60 -2.92 16 2 C 0.09 2.06 3.89 30.96 0.12 2.18 16 3 H 0.09 1.93 7.97 -2.39 -0.02 1.91 16 4 O -0.39 -9.61 11.20 -148.98 -1.67 -11.28 16 5 C 0.05 0.97 7.72 72.67 0.56 1.53 16 6 C -0.19 -3.95 5.53 31.90 0.18 -3.78 16 7 C 0.11 2.46 1.10 -9.80 -0.01 2.44 16 8 O -0.55 -12.26 12.97 -148.98 -1.93 -14.19 16 9 C 0.10 2.73 4.11 86.38 0.35 3.09 16 10 N -1.11 -34.10 4.72 -187.50 -0.88 -34.98 16 11 S 2.72 112.22 4.97 -56.49 -0.28 111.94 16 12 O -1.01 -43.21 16.38 -128.00 -2.10 -45.31 16 13 O -1.00 -47.61 16.50 -128.00 -2.11 -49.72 16 14 C -0.80 -36.66 5.96 22.73 0.14 -36.52 16 15 C -0.02 -0.67 9.54 22.22 0.21 -0.46 16 16 C -0.25 -10.38 10.05 22.46 0.23 -10.15 16 17 C -0.08 -3.28 10.02 22.22 0.22 -3.06 16 18 C -0.19 -9.13 8.67 22.73 0.20 -8.93 16 19 C 0.16 8.05 5.55 -21.29 -0.12 7.94 16 20 C -0.47 -22.72 7.66 23.46 0.18 -22.55 16 21 H 0.10 4.18 5.69 -2.91 -0.02 4.17 16 22 C 0.04 1.80 5.21 85.25 0.44 2.24 16 23 N -0.81 -39.29 10.90 21.83 0.24 -39.05 16 24 Si 0.97 34.54 29.58 68.60 2.03 36.57 16 25 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 26 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 27 H -0.24 -7.78 7.11 99.48 0.71 -7.07 16 28 H 0.08 1.71 6.67 -2.39 -0.02 1.69 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.51 6.88 -2.39 -0.02 1.50 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.11 1.80 8.08 -2.39 -0.02 1.78 16 34 H 0.09 2.06 7.87 -2.38 -0.02 2.04 16 35 H 0.39 6.76 8.56 -74.06 -0.63 6.12 16 36 H 0.08 2.24 6.58 -2.39 -0.02 2.22 16 37 H 0.09 2.45 6.54 -2.39 -0.02 2.43 16 38 H 0.42 10.95 7.45 -96.73 -0.72 10.22 16 39 H 0.12 4.83 7.32 -2.91 -0.02 4.81 16 40 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.11 5.64 6.22 -2.91 -0.02 5.63 16 43 H 0.30 12.93 8.30 -92.70 -0.77 12.16 16 Total: -1.00 -65.35 356.64 -3.69 -69.04 By element: Atomic # 1 Polarization: 46.23 SS G_CDS: -0.29 Total: 45.95 kcal Atomic # 6 Polarization: -72.26 SS G_CDS: 3.31 Total: -68.95 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -0.65 Total: -74.03 kcal Atomic # 8 Polarization: -112.70 SS G_CDS: -7.81 Total: -120.51 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Atomic # 16 Polarization: 112.22 SS G_CDS: -0.28 Total: 111.94 kcal Total: -65.35 -3.69 -69.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601406322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.740 kcal (2) G-P(sol) polarization free energy of solvation -65.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds