Wall clock time and date at job start Sat Apr 11 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99742 * 2 1 4 4 C 1.53006 * 110.45335 * 128.96146 * 3 2 1 5 5 O 1.42899 * 109.46630 * 184.71787 * 4 3 2 6 6 C 1.54508 * 110.51205 * 251.71268 * 3 2 1 7 7 C 1.54482 * 104.06152 * 118.64791 * 6 3 2 8 8 O 1.44426 * 104.80382 * 336.02132 * 7 6 3 9 9 C 1.44425 * 105.27563 * 40.50971 * 8 7 6 10 10 S 1.65602 * 120.00137 * 180.02562 * 2 1 3 11 11 O 1.42096 * 106.40009 * 160.97748 * 10 2 1 12 12 O 1.42103 * 106.40012 * 28.06173 * 10 2 1 13 13 C 1.76202 * 107.21844 * 274.52106 * 10 2 1 14 14 C 1.38652 * 119.87282 * 264.28871 * 13 10 2 15 15 C 1.38614 * 120.49635 * 180.25840 * 14 13 10 16 16 C 1.37643 * 120.24967 * 359.44712 * 15 14 13 17 17 C 1.40690 * 119.74262 * 0.27481 * 16 15 14 18 18 C 1.41402 * 120.24581 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99973 * 208.70908 * 18 17 16 20 20 C 1.39949 * 119.99571 * 28.70024 * 18 17 16 21 21 N 1.30821 * 120.00176 * 12.13895 * 20 18 17 22 22 Si 1.86799 * 119.99721 * 192.13428 * 20 18 17 23 23 H 1.48498 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47073 * 120.00268 * 22 20 18 25 25 H 1.48496 * 109.47158 * 240.00450 * 22 20 18 26 26 C 1.37599 * 119.87516 * 83.99599 * 13 10 2 27 27 H 1.09000 * 109.47253 * 269.99652 * 1 2 3 28 28 H 1.08994 * 109.47491 * 29.99874 * 1 2 3 29 29 H 1.09005 * 109.47472 * 150.00037 * 1 2 3 30 30 H 1.09004 * 109.46770 * 304.71323 * 4 3 2 31 31 H 1.08996 * 109.47058 * 64.71888 * 4 3 2 32 32 H 0.96708 * 113.99906 * 180.02562 * 5 4 3 33 33 H 1.09003 * 110.50893 * 237.29033 * 6 3 2 34 34 H 1.08993 * 110.50990 * 0.02562 * 6 3 2 35 35 H 1.08999 * 110.36958 * 217.19041 * 7 6 3 36 36 H 1.08998 * 110.46501 * 94.89994 * 7 6 3 37 37 H 1.08995 * 110.37553 * 200.65577 * 9 8 7 38 38 H 1.09005 * 110.37061 * 78.31781 * 9 8 7 39 39 H 1.07998 * 119.75592 * 0.02562 * 14 13 10 40 40 H 1.08000 * 119.87559 * 179.72346 * 15 14 13 41 41 H 1.08001 * 120.12502 * 180.30051 * 16 15 14 42 42 H 0.96998 * 119.99970 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.12644 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 3.2454 1.2811 1.1147 5 8 3.8705 2.5651 1.1665 6 6 2.8614 1.5106 -1.3740 7 6 2.2093 2.8159 -1.8814 8 8 0.9439 2.8896 -1.1890 9 6 1.2227 2.4564 0.1602 10 16 2.2930 -1.4341 -0.0006 11 8 3.6097 -1.1370 -0.4448 12 8 1.4519 -2.3828 -0.6424 13 6 2.4389 -1.9529 1.6769 14 6 3.5885 -1.6575 2.3937 15 6 3.7192 -2.0640 3.7124 16 6 2.7019 -2.7568 4.3285 17 6 1.5285 -3.0570 3.6127 18 6 0.4769 -3.7687 4.2350 19 1 -0.1789 -4.3900 3.6433 20 6 0.2862 -3.6679 5.6178 21 7 0.9155 -2.7455 6.2994 22 14 -0.8670 -4.8504 6.4901 23 1 -1.4508 -5.7923 5.5016 24 1 -0.1105 -5.6146 7.5143 25 1 -1.9561 -4.0848 7.1481 26 6 1.4092 -2.6444 2.2726 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 2.7626 1.0733 2.0696 31 1 3.9980 0.5185 0.9144 32 1 4.5480 2.6454 1.8519 33 1 3.9377 1.6404 -1.2605 34 1 2.6443 0.6864 -2.0534 35 1 2.0501 2.7666 -2.9586 36 1 2.8305 3.6753 -1.6293 37 1 0.3057 2.1312 0.6514 38 1 1.6934 3.2598 0.7270 39 1 4.3897 -1.1099 1.9198 40 1 4.6209 -1.8324 4.2599 41 1 2.8039 -3.0683 5.3576 42 1 0.7830 -2.6754 7.2577 43 1 0.5125 -2.8689 1.7139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601427015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:50 Heat of formation + Delta-G solvation = -133.266485 kcal Electronic energy + Delta-G solvation = -29387.351453 eV Core-core repulsion = 25331.978346 eV Total energy + Delta-G solvation = -4055.373107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.13184 -37.75824 -36.98581 -36.53159 -35.48501 -35.33543 -33.89304 -31.38010 -30.17028 -29.91509 -29.10618 -26.65935 -25.59175 -24.94827 -22.62756 -21.92286 -21.10611 -20.65386 -18.57478 -18.07768 -17.46981 -17.03142 -16.37857 -16.05234 -15.75111 -15.54395 -15.29989 -14.92259 -14.82746 -14.47043 -14.17613 -13.73520 -13.51016 -13.36098 -13.23181 -12.93173 -12.63728 -12.31352 -12.01173 -11.89653 -11.70774 -11.62771 -11.52305 -11.47073 -11.41061 -11.31735 -11.05351 -11.01962 -10.96716 -10.68026 -10.64438 -10.00940 -9.80953 -9.72390 -9.62456 -9.45780 -8.90955 -8.12508 -7.74693 -6.95099 -4.62476 0.85122 2.08523 2.54273 2.97362 2.98774 3.03131 3.20227 3.79411 3.84830 4.10188 4.22421 4.37745 4.45559 4.72076 4.76012 4.96858 5.07891 5.19873 5.28071 5.31875 5.49799 5.56723 5.63849 5.69561 5.75080 5.77753 5.86902 5.94393 6.02442 6.04313 6.07435 6.21096 6.53123 6.58758 6.67760 6.74084 6.85607 6.98749 7.12692 7.26947 7.53491 7.61789 7.74373 7.85892 8.33248 8.60263 8.64544 10.00428 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.003715 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.354559 B = 7534.867673 C = 7592.731534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.989 5.989 3 C 0.159 3.841 4 C 0.050 3.950 5 O -0.566 6.566 6 C -0.154 4.154 7 C 0.050 3.950 8 O -0.374 6.374 9 C 0.049 3.951 10 S 2.682 3.318 11 O -0.969 6.969 12 O -0.967 6.967 13 C -0.635 4.635 14 C -0.148 4.148 15 C -0.122 4.122 16 C -0.111 4.111 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.083 0.917 20 C 0.074 3.926 21 N -0.801 5.801 22 Si 0.913 3.087 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.273 1.273 26 C -0.119 4.119 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.385 0.615 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.282 0.718 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 9.290 -6.491 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.826 5.826 3 C 0.071 3.929 4 C -0.029 4.029 5 O -0.371 6.371 6 C -0.193 4.193 7 C -0.027 4.027 8 O -0.293 6.293 9 C -0.029 4.029 10 S 2.780 3.220 11 O -0.959 6.959 12 O -0.957 6.957 13 C -0.727 4.727 14 C -0.169 4.169 15 C -0.142 4.142 16 C -0.130 4.130 17 C 0.089 3.911 18 C -0.491 4.491 19 H 0.101 0.899 20 C -0.144 4.144 21 N -0.427 5.427 22 Si 0.738 3.262 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.141 4.141 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.233 0.767 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.144 0.856 42 H 0.093 0.907 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.819 9.155 -7.616 12.047 hybrid contribution 0.004 -0.716 1.995 2.120 sum 1.823 8.439 -5.621 10.303 Atomic orbital electron populations 1.21727 0.78050 1.04560 1.02578 1.57532 1.15321 1.19660 1.90096 1.21253 0.91779 0.84925 0.94988 1.22807 0.95729 0.86515 0.97897 1.86310 1.57620 1.32571 1.60638 1.23391 1.01899 0.98507 0.95471 1.23397 0.85129 0.96749 0.97445 1.89086 1.29820 1.87899 1.22483 1.23718 0.99147 0.94559 0.85458 1.01993 0.72746 0.71955 0.75348 1.93493 1.37213 1.84037 1.81169 1.93524 1.68402 1.59372 1.74436 1.29806 1.03683 1.16487 1.22753 1.20110 0.96138 1.05654 0.95022 1.20825 0.98410 1.00457 0.94457 1.21667 0.91870 0.99004 1.00510 1.17697 0.92385 0.90394 0.90597 1.19657 1.12379 1.24666 0.92364 0.89885 1.25913 0.96038 0.94658 0.97747 1.69744 1.36486 1.27141 1.09324 0.86163 0.79904 0.80619 0.79557 1.18248 1.19644 1.19824 1.20811 0.96237 1.00151 0.96868 0.92117 0.89725 0.89679 0.91659 0.90316 0.76723 0.88707 0.90477 0.89285 0.91799 0.87865 0.89902 0.87562 0.88319 0.85646 0.90662 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 9.35 59.85 0.56 1.60 16 2 N -0.99 -15.47 3.01 -106.15 -0.32 -15.79 16 3 C 0.16 2.27 0.83 -130.25 -0.11 2.16 16 4 C 0.05 0.69 4.85 37.16 0.18 0.87 16 5 O -0.57 -6.54 12.09 -35.23 -0.43 -6.96 16 6 C -0.15 -2.08 5.21 -25.16 -0.13 -2.21 16 7 C 0.05 0.58 7.63 37.93 0.29 0.87 16 8 O -0.37 -5.04 11.24 -35.23 -0.40 -5.44 16 9 C 0.05 0.63 5.83 37.93 0.22 0.85 16 10 S 2.68 50.53 4.95 -107.50 -0.53 50.00 16 11 O -0.97 -18.68 13.51 -57.17 -0.77 -19.45 16 12 O -0.97 -20.43 16.13 -57.17 -0.92 -21.35 16 13 C -0.64 -13.41 5.88 -39.66 -0.23 -13.64 16 14 C -0.15 -3.03 8.54 -39.29 -0.34 -3.37 16 15 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 16 C -0.11 -2.65 8.66 -38.87 -0.34 -2.98 16 17 C 0.09 2.31 5.54 -106.83 -0.59 1.72 16 18 C -0.46 -11.49 9.06 -37.74 -0.34 -11.84 16 19 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 20 C 0.07 1.73 5.23 -17.34 -0.09 1.64 16 21 N -0.80 -19.26 10.91 55.55 0.61 -18.65 16 22 Si 0.91 17.69 29.58 -169.99 -5.03 12.67 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 24 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 26 C -0.12 -2.77 9.26 -38.87 -0.36 -3.13 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 1.02 6.04 -51.93 -0.31 0.71 16 29 H 0.08 1.19 7.06 -51.93 -0.37 0.82 16 30 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.08 1.19 4.36 -51.93 -0.23 0.96 16 32 H 0.39 2.88 9.12 45.56 0.42 3.30 16 33 H 0.09 1.26 7.59 -51.93 -0.39 0.86 16 34 H 0.08 1.09 7.70 -51.93 -0.40 0.69 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 1.24 5.99 -51.93 -0.31 0.93 16 38 H 0.08 1.03 6.98 -51.93 -0.36 0.67 16 39 H 0.11 1.93 6.04 -52.49 -0.32 1.62 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.13 3.07 6.27 -52.49 -0.33 2.74 16 42 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 43 H 0.11 2.44 7.75 -52.48 -0.41 2.03 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -29.71 350.22 -8.86 -38.56 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -4.67 Total: 11.56 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: -1.68 Total: -30.44 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.29 Total: -34.44 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -2.52 Total: -53.20 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 50.53 SS G_CDS: -0.53 Total: 50.00 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.71 -8.86 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.705 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds