Wall clock time and date at job start Sat Apr 11 2020 06:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99742 * 2 1 4 4 C 1.53006 * 110.45335 * 128.96146 * 3 2 1 5 5 O 1.42899 * 109.46630 * 184.71787 * 4 3 2 6 6 C 1.54508 * 110.51205 * 251.71268 * 3 2 1 7 7 C 1.54482 * 104.06152 * 118.64791 * 6 3 2 8 8 O 1.44426 * 104.80382 * 336.02132 * 7 6 3 9 9 C 1.44425 * 105.27563 * 40.50971 * 8 7 6 10 10 S 1.65602 * 120.00137 * 180.02562 * 2 1 3 11 11 O 1.42096 * 106.40009 * 160.97748 * 10 2 1 12 12 O 1.42103 * 106.40012 * 28.06173 * 10 2 1 13 13 C 1.76202 * 107.21844 * 274.52106 * 10 2 1 14 14 C 1.38652 * 119.87282 * 264.28871 * 13 10 2 15 15 C 1.38614 * 120.49635 * 180.25840 * 14 13 10 16 16 C 1.37643 * 120.24967 * 359.44712 * 15 14 13 17 17 C 1.40690 * 119.74262 * 0.27481 * 16 15 14 18 18 C 1.41402 * 120.24581 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99973 * 208.70908 * 18 17 16 20 20 C 1.39949 * 119.99571 * 28.70024 * 18 17 16 21 21 N 1.30821 * 120.00176 * 12.13895 * 20 18 17 22 22 Si 1.86799 * 119.99721 * 192.13428 * 20 18 17 23 23 H 1.48498 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47073 * 120.00268 * 22 20 18 25 25 H 1.48496 * 109.47158 * 240.00450 * 22 20 18 26 26 C 1.37599 * 119.87516 * 83.99599 * 13 10 2 27 27 H 1.09000 * 109.47253 * 269.99652 * 1 2 3 28 28 H 1.08994 * 109.47491 * 29.99874 * 1 2 3 29 29 H 1.09005 * 109.47472 * 150.00037 * 1 2 3 30 30 H 1.09004 * 109.46770 * 304.71323 * 4 3 2 31 31 H 1.08996 * 109.47058 * 64.71888 * 4 3 2 32 32 H 0.96708 * 113.99906 * 180.02562 * 5 4 3 33 33 H 1.09003 * 110.50893 * 237.29033 * 6 3 2 34 34 H 1.08993 * 110.50990 * 0.02562 * 6 3 2 35 35 H 1.08999 * 110.36958 * 217.19041 * 7 6 3 36 36 H 1.08998 * 110.46501 * 94.89994 * 7 6 3 37 37 H 1.08995 * 110.37553 * 200.65577 * 9 8 7 38 38 H 1.09005 * 110.37061 * 78.31781 * 9 8 7 39 39 H 1.07998 * 119.75592 * 0.02562 * 14 13 10 40 40 H 1.08000 * 119.87559 * 179.72346 * 15 14 13 41 41 H 1.08001 * 120.12502 * 180.30051 * 16 15 14 42 42 H 0.96998 * 119.99970 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.12644 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 3.2454 1.2811 1.1147 5 8 3.8705 2.5651 1.1665 6 6 2.8614 1.5106 -1.3740 7 6 2.2093 2.8159 -1.8814 8 8 0.9439 2.8896 -1.1890 9 6 1.2227 2.4564 0.1602 10 16 2.2930 -1.4341 -0.0006 11 8 3.6097 -1.1370 -0.4448 12 8 1.4519 -2.3828 -0.6424 13 6 2.4389 -1.9529 1.6769 14 6 3.5885 -1.6575 2.3937 15 6 3.7192 -2.0640 3.7124 16 6 2.7019 -2.7568 4.3285 17 6 1.5285 -3.0570 3.6127 18 6 0.4769 -3.7687 4.2350 19 1 -0.1789 -4.3900 3.6433 20 6 0.2862 -3.6679 5.6178 21 7 0.9155 -2.7455 6.2994 22 14 -0.8670 -4.8504 6.4901 23 1 -1.4508 -5.7923 5.5016 24 1 -0.1105 -5.6146 7.5143 25 1 -1.9561 -4.0848 7.1481 26 6 1.4092 -2.6444 2.2726 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 2.7626 1.0733 2.0696 31 1 3.9980 0.5185 0.9144 32 1 4.5480 2.6454 1.8519 33 1 3.9377 1.6404 -1.2605 34 1 2.6443 0.6864 -2.0534 35 1 2.0501 2.7666 -2.9586 36 1 2.8305 3.6753 -1.6293 37 1 0.3057 2.1312 0.6514 38 1 1.6934 3.2598 0.7270 39 1 4.3897 -1.1099 1.9198 40 1 4.6209 -1.8324 4.2599 41 1 2.8039 -3.0683 5.3576 42 1 0.7830 -2.6754 7.2577 43 1 0.5125 -2.8689 1.7139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601427015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:49 Heat of formation + Delta-G solvation = -155.330006 kcal Electronic energy + Delta-G solvation = -29388.308199 eV Core-core repulsion = 25331.978346 eV Total energy + Delta-G solvation = -4056.329853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18186 -39.49698 -38.46614 -37.59936 -36.99073 -36.53555 -35.65702 -32.45199 -31.93414 -31.64303 -30.12582 -27.80789 -27.34206 -26.06447 -23.81973 -23.42473 -22.84494 -21.87624 -20.15542 -19.41896 -18.77451 -18.24960 -17.79061 -17.41476 -17.01433 -16.82184 -16.73133 -16.49018 -16.14279 -15.59429 -15.42333 -15.25476 -15.06624 -14.71563 -14.33547 -14.26162 -13.96548 -13.75185 -13.55591 -13.32760 -13.28100 -13.15294 -13.03232 -12.83990 -12.79264 -12.68898 -12.58133 -12.39928 -12.21982 -11.99888 -11.78970 -11.54752 -11.37584 -11.18801 -10.99614 -10.65658 -10.18442 -9.85206 -9.53270 -8.70342 -6.48299 -0.65037 0.35741 0.81433 1.38066 1.43271 1.51927 1.85136 2.17963 2.54560 2.64513 2.83176 3.20533 3.28049 3.38600 3.50940 3.70334 3.93826 3.98012 4.18978 4.24437 4.27715 4.31727 4.48532 4.55623 4.62092 4.65999 4.72077 4.80420 4.83019 4.83611 4.87525 4.96034 4.98929 5.02955 5.11198 5.19326 5.37706 5.50105 5.54421 5.77952 5.85077 5.93439 6.08404 6.51325 6.79248 6.79419 6.83120 8.27422 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.003715 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.354559 B = 7534.867673 C = 7592.731534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.983 5.983 3 C 0.148 3.852 4 C 0.055 3.945 5 O -0.564 6.564 6 C -0.157 4.157 7 C 0.051 3.949 8 O -0.385 6.385 9 C 0.053 3.947 10 S 2.703 3.297 11 O -0.971 6.971 12 O -0.991 6.991 13 C -0.642 4.642 14 C -0.141 4.141 15 C -0.122 4.122 16 C -0.131 4.131 17 C 0.064 3.936 18 C -0.499 4.499 19 H 0.077 0.923 20 C 0.038 3.962 21 N -0.828 5.828 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.264 1.264 25 H -0.265 1.265 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.403 0.597 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.113 0.887 42 H 0.290 0.710 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 10.746 -6.774 12.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.822 5.822 3 C 0.060 3.940 4 C -0.025 4.025 5 O -0.372 6.372 6 C -0.197 4.197 7 C -0.025 4.025 8 O -0.304 6.304 9 C -0.025 4.025 10 S 2.798 3.202 11 O -0.962 6.962 12 O -0.982 6.982 13 C -0.731 4.731 14 C -0.161 4.161 15 C -0.142 4.142 16 C -0.151 4.151 17 C 0.061 3.939 18 C -0.528 4.528 19 H 0.095 0.905 20 C -0.176 4.176 21 N -0.454 5.454 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.188 1.188 25 H -0.189 1.189 26 C -0.159 4.159 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.254 0.746 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.131 0.869 42 H 0.101 0.899 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.171 10.612 -7.873 13.391 hybrid contribution 0.013 -1.026 1.983 2.233 sum 2.184 9.586 -5.890 11.461 Atomic orbital electron populations 1.21906 0.76903 1.05391 1.03234 1.57319 1.16027 1.19181 1.89651 1.21524 0.92346 0.84414 0.95724 1.22601 0.95346 0.87246 0.97268 1.86281 1.58253 1.31032 1.61659 1.23425 1.02175 0.99231 0.94821 1.23521 0.84547 0.96148 0.98323 1.89078 1.30739 1.87876 1.22687 1.23737 0.99180 0.94035 0.85563 1.01356 0.72527 0.72211 0.74061 1.93481 1.37706 1.84250 1.80729 1.93491 1.69042 1.61129 1.74518 1.30240 1.03201 1.15484 1.24219 1.20484 0.96379 1.04522 0.94728 1.21160 0.98747 0.99250 0.94998 1.21669 0.92660 1.00539 1.00232 1.18024 0.93029 0.91170 0.91645 1.19861 1.13272 1.26064 0.93626 0.90513 1.26657 0.97380 0.95822 0.97771 1.69778 1.37541 1.28111 1.09955 0.85150 0.77985 0.78375 0.78230 1.18472 1.18827 1.18927 1.20869 0.97150 1.01255 0.96668 0.91631 0.87591 0.90145 0.92504 0.91521 0.74578 0.88495 0.91459 0.87520 0.90432 0.87179 0.89109 0.84883 0.85265 0.86877 0.89876 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.85 9.35 127.77 1.20 3.04 16 2 N -0.98 -29.62 3.01 -489.75 -1.47 -31.09 16 3 C 0.15 3.93 0.83 4.62 0.00 3.94 16 4 C 0.06 1.43 4.85 71.98 0.35 1.78 16 5 O -0.56 -11.53 12.09 -148.98 -1.80 -13.34 16 6 C -0.16 -3.93 5.21 31.61 0.16 -3.76 16 7 C 0.05 1.06 7.63 72.49 0.55 1.61 16 8 O -0.38 -9.36 11.24 -148.98 -1.67 -11.03 16 9 C 0.05 1.24 5.83 72.48 0.42 1.66 16 10 S 2.70 100.24 4.95 -56.49 -0.28 99.96 16 11 O -0.97 -36.21 13.51 -128.00 -1.73 -37.93 16 12 O -0.99 -41.95 16.13 -128.00 -2.06 -44.01 16 13 C -0.64 -27.03 5.88 22.22 0.13 -26.90 16 14 C -0.14 -5.60 8.54 22.46 0.19 -5.41 16 15 C -0.12 -5.12 10.02 22.22 0.22 -4.90 16 16 C -0.13 -6.40 8.66 22.73 0.20 -6.20 16 17 C 0.06 3.32 5.54 -21.29 -0.12 3.20 16 18 C -0.50 -25.80 9.06 23.46 0.21 -25.59 16 19 H 0.08 3.89 7.87 -2.91 -0.02 3.87 16 20 C 0.04 1.83 5.23 85.26 0.45 2.28 16 21 N -0.83 -40.45 10.91 21.83 0.24 -40.21 16 22 Si 0.98 36.56 29.58 68.60 2.03 38.59 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 25 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 26 C -0.14 -6.59 9.26 22.73 0.21 -6.38 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.11 2.36 6.04 -2.39 -0.01 2.34 16 29 H 0.08 2.21 7.06 -2.38 -0.02 2.20 16 30 H 0.06 1.56 8.05 -2.39 -0.02 1.54 16 31 H 0.07 1.88 4.36 -2.39 -0.01 1.87 16 32 H 0.40 4.91 9.12 -74.05 -0.68 4.24 16 33 H 0.10 2.36 7.59 -2.39 -0.02 2.34 16 34 H 0.07 1.80 7.70 -2.39 -0.02 1.78 16 35 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 2.41 5.99 -2.39 -0.01 2.39 16 38 H 0.09 2.01 6.98 -2.38 -0.02 1.99 16 39 H 0.13 4.55 6.04 -2.91 -0.02 4.53 16 40 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.11 5.71 6.27 -2.91 -0.02 5.69 16 42 H 0.29 12.77 8.30 -92.71 -0.77 12.00 16 43 H 0.11 5.00 7.75 -2.91 -0.02 4.98 16 Total: -1.00 -63.82 350.22 -2.19 -66.01 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.38 Total: 34.68 kcal Atomic # 6 Polarization: -65.81 SS G_CDS: 4.18 Total: -61.63 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.23 Total: -71.30 kcal Atomic # 8 Polarization: -99.04 SS G_CDS: -7.27 Total: -106.31 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Atomic # 16 Polarization: 100.24 SS G_CDS: -0.28 Total: 99.96 kcal Total: -63.82 -2.19 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.319 kcal (2) G-P(sol) polarization free energy of solvation -63.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds