Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47578 * 2 1 4 4 C 1.42893 * 114.00642 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.45668 * 27.40008 * 4 3 2 6 6 C 1.54484 * 110.62984 * 264.71428 * 4 3 2 7 7 O 1.44420 * 104.80276 * 265.27016 * 6 4 3 8 8 C 1.44646 * 105.37183 * 319.56738 * 7 6 4 9 9 C 1.54487 * 104.69477 * 40.34637 * 8 7 6 10 10 H 1.08993 * 110.51283 * 94.90599 * 9 8 7 11 11 N 1.46501 * 110.50796 * 217.47756 * 9 8 7 12 12 S 1.65598 * 119.99738 * 257.54846 * 11 9 8 13 13 O 1.42106 * 106.40171 * 311.72335 * 12 11 9 14 14 O 1.42106 * 106.40124 * 178.80640 * 12 11 9 15 15 C 1.76196 * 107.22064 * 65.26712 * 12 11 9 16 16 C 1.37641 * 120.12559 * 244.10299 * 15 12 11 17 17 C 1.38617 * 120.24586 * 180.25258 * 16 15 12 18 18 C 1.38652 * 120.50117 * 359.44669 * 17 16 15 19 19 C 1.37600 * 120.24725 * 0.27581 * 18 17 16 20 20 C 1.40694 * 120.13067 * 63.80487 * 15 12 11 21 21 C 1.41399 * 120.24465 * 0.02562 * 20 15 12 22 22 H 1.08001 * 119.99171 * 329.88002 * 21 20 15 23 23 C 1.39947 * 120.00323 * 149.87755 * 21 20 15 24 24 N 1.30816 * 119.99708 * 162.98494 * 23 21 20 25 25 Si 1.86791 * 119.99829 * 342.98119 * 23 21 20 26 26 H 1.48504 * 109.46913 * 95.05079 * 25 23 21 27 27 H 1.48506 * 109.47177 * 215.05082 * 25 23 21 28 28 H 1.48504 * 109.47307 * 335.05108 * 25 23 21 29 29 H 1.09001 * 109.46931 * 299.99834 * 1 2 3 30 30 H 1.09004 * 109.47372 * 59.99436 * 1 2 3 31 31 H 1.09001 * 109.47587 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46931 * 240.00166 * 2 1 3 33 33 H 1.09004 * 109.47372 * 120.00564 * 2 1 3 34 34 H 1.08990 * 110.37014 * 24.10501 * 6 4 3 35 35 H 1.08998 * 110.37230 * 146.33119 * 6 4 3 36 36 H 1.08993 * 110.33855 * 281.59074 * 8 7 6 37 37 H 1.08996 * 110.50671 * 159.18160 * 8 7 6 38 38 H 0.96996 * 120.00125 * 77.54369 * 11 9 8 39 39 H 1.08000 * 119.87782 * 359.97438 * 16 15 12 40 40 H 1.07995 * 119.74866 * 179.71867 * 17 16 15 41 41 H 1.08001 * 119.87909 * 180.25050 * 18 17 16 42 42 H 1.08006 * 120.12449 * 179.97438 * 19 18 17 43 43 H 0.97004 * 120.00019 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8820 0.5864 -0.4709 6 6 3.9635 1.6357 1.4388 7 8 4.0889 3.0637 1.6143 8 6 4.6170 3.5589 0.3620 9 6 3.8712 2.7523 -0.7241 10 1 3.0025 3.3051 -1.0814 11 7 4.7703 2.4366 -1.8369 12 16 4.6816 3.3041 -3.2447 13 8 3.3064 3.3537 -3.5995 14 8 5.6870 2.7814 -4.1022 15 6 5.1586 4.9581 -2.8691 16 6 4.2529 5.9857 -3.0036 17 6 4.6270 7.2886 -2.7138 18 6 5.9116 7.5708 -2.2750 19 6 6.8319 6.5585 -2.1279 20 6 6.4649 5.2327 -2.4246 21 6 7.4023 4.1844 -2.2772 22 1 7.0649 3.1903 -2.0233 23 6 8.7669 4.4348 -2.4604 24 7 9.6539 3.5845 -2.0115 25 14 9.3216 5.9832 -3.3459 26 1 9.6243 7.0417 -2.3493 27 1 10.5407 5.6888 -4.1412 28 1 8.2408 6.4499 -4.2510 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2548 1.2257 2.1583 35 1 4.9344 1.1519 1.5458 36 1 5.6894 3.3733 0.3033 37 1 4.4088 4.6233 0.2542 38 1 5.4175 1.7195 -1.7491 39 1 3.2482 5.7768 -3.3404 40 1 3.9112 8.0894 -2.8264 41 1 6.1912 8.5891 -2.0482 42 1 7.8322 6.7806 -1.7864 43 1 10.5998 3.7579 -2.1388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601434788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = -144.105058 kcal Electronic energy + Delta-G solvation = -29163.890655 eV Core-core repulsion = 25108.047552 eV Total energy + Delta-G solvation = -4055.843103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.77801 -37.92734 -37.17832 -36.34835 -34.96640 -34.55161 -33.88650 -31.52993 -30.78037 -30.15920 -28.83921 -27.99690 -25.47086 -23.30312 -22.47430 -22.03301 -21.33106 -21.06083 -19.02904 -17.81203 -17.48686 -16.89450 -16.72913 -16.19502 -15.88123 -15.43923 -15.30211 -14.95929 -14.70675 -14.28104 -14.03917 -13.81915 -13.64953 -13.50707 -12.88345 -12.82188 -12.44244 -12.32808 -12.25586 -12.07758 -11.95043 -11.58947 -11.37323 -11.33897 -11.27084 -11.21159 -11.08511 -10.99695 -10.86641 -10.76821 -10.45235 -10.02742 -9.91952 -9.84907 -9.52524 -9.34029 -8.84923 -8.30750 -7.89150 -7.28272 -4.92908 1.34927 2.02006 2.48100 2.93840 3.05729 3.16389 3.40161 3.74869 3.79533 4.14224 4.23419 4.49558 4.59001 4.82140 4.94916 4.98977 5.03346 5.07971 5.23478 5.31744 5.40818 5.41775 5.48328 5.62275 5.66561 5.77268 5.80056 5.83964 5.88898 6.00503 6.14590 6.18553 6.26146 6.38889 6.59769 6.80122 6.87235 7.03991 7.17427 7.19887 7.31430 7.42745 7.50787 7.72926 7.96759 8.20540 8.43250 9.70951 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.004392 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.767483 B = 6374.071121 C = 6680.162119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.368 6.368 4 C 0.051 3.949 5 H 0.085 0.915 6 C 0.028 3.972 7 O -0.368 6.368 8 C 0.032 3.968 9 C 0.129 3.871 10 H 0.117 0.883 11 N -1.109 6.109 12 S 2.699 3.301 13 O -0.991 6.991 14 O -0.958 6.958 15 C -0.771 4.771 16 C 0.017 3.983 17 C -0.258 4.258 18 C -0.042 4.042 19 C -0.234 4.234 20 C 0.161 3.839 21 C -0.431 4.431 22 H 0.102 0.898 23 C 0.091 3.909 24 N -0.778 5.778 25 Si 0.912 3.088 26 H -0.267 1.267 27 H -0.284 1.284 28 H -0.239 1.239 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.414 0.586 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 -4.550 5.285 10.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.287 6.287 4 C -0.009 4.009 5 H 0.103 0.897 6 C -0.050 4.050 7 O -0.286 6.286 8 C -0.047 4.047 9 C 0.020 3.980 10 H 0.135 0.865 11 N -0.866 5.866 12 S 2.796 3.204 13 O -0.981 6.981 14 O -0.948 6.948 15 C -0.865 4.865 16 C -0.002 4.002 17 C -0.278 4.278 18 C -0.061 4.061 19 C -0.254 4.254 20 C 0.156 3.844 21 C -0.458 4.458 22 H 0.120 0.880 23 C -0.132 4.132 24 N -0.399 5.399 25 Si 0.737 3.263 26 H -0.193 1.193 27 H -0.211 1.211 28 H -0.162 1.162 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.249 0.751 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.209 -4.669 4.692 10.545 hybrid contribution 1.268 0.538 0.060 1.378 sum -6.941 -4.131 4.751 9.371 Atomic orbital electron populations 1.21740 0.93663 1.02090 1.03374 1.22560 0.95788 0.83938 1.00022 1.87995 1.19625 1.26273 1.94810 1.23763 0.82385 0.98788 0.96009 0.89729 1.23853 1.00629 0.84132 0.96403 1.89178 1.85612 1.19359 1.34469 1.24087 0.98968 0.99864 0.81749 1.21986 0.93093 0.94891 0.88051 0.86521 1.55782 1.48384 1.50328 1.32085 1.01225 0.72664 0.74322 0.72172 1.93479 1.34982 1.87887 1.81770 1.93571 1.59532 1.79320 1.62391 1.29899 1.04785 1.19925 1.31924 1.20417 0.96504 0.92506 0.90811 1.20503 0.97051 0.95854 1.14398 1.20844 0.93680 0.97266 0.94264 1.21186 0.99334 0.93923 1.10937 1.17025 0.89986 0.92463 0.84922 1.19779 0.90763 0.97308 1.37973 0.88048 1.26158 0.96202 0.98333 0.92545 1.69627 1.03787 1.35353 1.31167 0.86300 0.79000 0.80266 0.80698 1.19268 1.21116 1.16215 0.91826 0.91576 0.91233 0.93169 0.93456 0.88740 0.91267 0.89913 0.87759 0.75146 0.86801 0.88063 0.88235 0.87564 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.15 0.38 -1.00 16 2 C 0.05 0.56 6.50 37.15 0.24 0.81 16 3 O -0.37 -5.15 9.99 -35.23 -0.35 -5.50 16 4 C 0.05 0.68 3.37 -25.16 -0.08 0.60 16 5 H 0.08 0.99 7.53 -51.93 -0.39 0.59 16 6 C 0.03 0.35 7.39 37.94 0.28 0.63 16 7 O -0.37 -5.87 11.65 -35.23 -0.41 -6.28 16 8 C 0.03 0.51 7.37 37.94 0.28 0.79 16 9 C 0.13 2.05 3.60 -66.36 -0.24 1.81 16 10 H 0.12 1.97 7.42 -51.93 -0.39 1.59 16 11 N -1.11 -18.90 4.49 -3.56 -0.02 -18.91 16 12 S 2.70 56.42 4.93 -107.50 -0.53 55.89 16 13 O -0.99 -21.66 16.35 -57.17 -0.93 -22.60 16 14 O -0.96 -22.97 16.70 -57.17 -0.95 -23.92 16 15 C -0.77 -17.00 5.94 -38.87 -0.23 -17.23 16 16 C 0.02 0.36 9.53 -39.66 -0.38 -0.02 16 17 C -0.26 -5.06 10.05 -39.29 -0.39 -5.45 16 18 C -0.04 -0.84 10.02 -39.66 -0.40 -1.23 16 19 C -0.23 -5.19 7.13 -38.87 -0.28 -5.47 16 20 C 0.16 3.76 5.11 -106.83 -0.55 3.21 16 21 C -0.43 -10.49 8.14 -37.74 -0.31 -10.79 16 22 H 0.10 2.42 5.93 -52.49 -0.31 2.11 16 23 C 0.09 2.21 5.42 -17.34 -0.09 2.11 16 24 N -0.78 -18.79 13.93 55.55 0.77 -18.02 16 25 Si 0.91 19.59 24.49 -169.99 -4.16 15.43 16 26 H -0.27 -5.40 6.71 56.52 0.38 -5.02 16 27 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.24 -5.39 6.82 56.52 0.39 -5.00 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.39 8.06 -51.93 -0.42 0.98 16 37 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 38 H 0.41 6.32 8.46 -34.47 -0.29 6.02 16 39 H 0.11 2.18 7.33 -52.49 -0.38 1.79 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.11 2.30 4.68 -52.48 -0.25 2.05 16 43 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -29.97 361.87 -8.72 -38.69 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.82 Total: 11.00 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -1.77 Total: -31.23 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.76 Total: -36.93 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -2.65 Total: -58.30 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.16 Total: 15.43 kcal Atomic # 16 Polarization: 56.42 SS G_CDS: -0.53 Total: 55.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.97 -8.72 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.413 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds