Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47578 * 2 1 4 4 C 1.42893 * 114.00642 * 180.02562 * 3 2 1 5 5 H 1.09004 * 110.45668 * 27.40008 * 4 3 2 6 6 C 1.54484 * 110.62984 * 264.71428 * 4 3 2 7 7 O 1.44420 * 104.80276 * 265.27016 * 6 4 3 8 8 C 1.44646 * 105.37183 * 319.56738 * 7 6 4 9 9 C 1.54487 * 104.69477 * 40.34637 * 8 7 6 10 10 H 1.08993 * 110.51283 * 94.90599 * 9 8 7 11 11 N 1.46501 * 110.50796 * 217.47756 * 9 8 7 12 12 S 1.65598 * 119.99738 * 257.54846 * 11 9 8 13 13 O 1.42106 * 106.40171 * 311.72335 * 12 11 9 14 14 O 1.42106 * 106.40124 * 178.80640 * 12 11 9 15 15 C 1.76196 * 107.22064 * 65.26712 * 12 11 9 16 16 C 1.37641 * 120.12559 * 244.10299 * 15 12 11 17 17 C 1.38617 * 120.24586 * 180.25258 * 16 15 12 18 18 C 1.38652 * 120.50117 * 359.44669 * 17 16 15 19 19 C 1.37600 * 120.24725 * 0.27581 * 18 17 16 20 20 C 1.40694 * 120.13067 * 63.80487 * 15 12 11 21 21 C 1.41399 * 120.24465 * 0.02562 * 20 15 12 22 22 H 1.08001 * 119.99171 * 329.88002 * 21 20 15 23 23 C 1.39947 * 120.00323 * 149.87755 * 21 20 15 24 24 N 1.30816 * 119.99708 * 162.98494 * 23 21 20 25 25 Si 1.86791 * 119.99829 * 342.98119 * 23 21 20 26 26 H 1.48504 * 109.46913 * 95.05079 * 25 23 21 27 27 H 1.48506 * 109.47177 * 215.05082 * 25 23 21 28 28 H 1.48504 * 109.47307 * 335.05108 * 25 23 21 29 29 H 1.09001 * 109.46931 * 299.99834 * 1 2 3 30 30 H 1.09004 * 109.47372 * 59.99436 * 1 2 3 31 31 H 1.09001 * 109.47587 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46931 * 240.00166 * 2 1 3 33 33 H 1.09004 * 109.47372 * 120.00564 * 2 1 3 34 34 H 1.08990 * 110.37014 * 24.10501 * 6 4 3 35 35 H 1.08998 * 110.37230 * 146.33119 * 6 4 3 36 36 H 1.08993 * 110.33855 * 281.59074 * 8 7 6 37 37 H 1.08996 * 110.50671 * 159.18160 * 8 7 6 38 38 H 0.96996 * 120.00125 * 77.54369 * 11 9 8 39 39 H 1.08000 * 119.87782 * 359.97438 * 16 15 12 40 40 H 1.07995 * 119.74866 * 179.71867 * 17 16 15 41 41 H 1.08001 * 119.87909 * 180.25050 * 18 17 16 42 42 H 1.08006 * 120.12449 * 179.97438 * 19 18 17 43 43 H 0.97004 * 120.00019 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8820 0.5864 -0.4709 6 6 3.9635 1.6357 1.4388 7 8 4.0889 3.0637 1.6143 8 6 4.6170 3.5589 0.3620 9 6 3.8712 2.7523 -0.7241 10 1 3.0025 3.3051 -1.0814 11 7 4.7703 2.4366 -1.8369 12 16 4.6816 3.3041 -3.2447 13 8 3.3064 3.3537 -3.5995 14 8 5.6870 2.7814 -4.1022 15 6 5.1586 4.9581 -2.8691 16 6 4.2529 5.9857 -3.0036 17 6 4.6270 7.2886 -2.7138 18 6 5.9116 7.5708 -2.2750 19 6 6.8319 6.5585 -2.1279 20 6 6.4649 5.2327 -2.4246 21 6 7.4023 4.1844 -2.2772 22 1 7.0649 3.1903 -2.0233 23 6 8.7669 4.4348 -2.4604 24 7 9.6539 3.5845 -2.0115 25 14 9.3216 5.9832 -3.3459 26 1 9.6243 7.0417 -2.3493 27 1 10.5407 5.6888 -4.1412 28 1 8.2408 6.4499 -4.2510 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2548 1.2257 2.1583 35 1 4.9344 1.1519 1.5458 36 1 5.6894 3.3733 0.3033 37 1 4.4088 4.6233 0.2542 38 1 5.4175 1.7195 -1.7491 39 1 3.2482 5.7768 -3.3404 40 1 3.9112 8.0894 -2.8264 41 1 6.1912 8.5891 -2.0482 42 1 7.8322 6.7806 -1.7864 43 1 10.5998 3.7579 -2.1388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601434788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = -166.625852 kcal Electronic energy + Delta-G solvation = -29164.867230 eV Core-core repulsion = 25108.047552 eV Total energy + Delta-G solvation = -4056.819678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93040 -39.59205 -38.22083 -38.10112 -36.74650 -35.94970 -35.57969 -32.53041 -32.34458 -31.81063 -29.93710 -29.25286 -27.19023 -24.30825 -23.78081 -23.33582 -22.96523 -22.33336 -20.57398 -19.55650 -18.97159 -18.34780 -17.98866 -17.57720 -17.12816 -16.95372 -16.57956 -16.19671 -16.05083 -15.88615 -15.49668 -15.35519 -15.09869 -14.73497 -14.57321 -14.03362 -13.79083 -13.63425 -13.56182 -13.38882 -13.12840 -13.06839 -13.03073 -12.92129 -12.73051 -12.69483 -12.56302 -12.41130 -12.17496 -12.12412 -11.87891 -11.72166 -11.39218 -11.10855 -11.02228 -10.76827 -10.13752 -9.95832 -9.58675 -9.03934 -6.70833 -0.29424 0.33945 0.78897 1.22936 1.36832 1.44805 2.03229 2.08398 2.50588 2.65022 2.88348 2.96872 3.31806 3.35284 3.70990 3.78472 3.86643 4.07420 4.15319 4.21199 4.23747 4.31186 4.33842 4.45135 4.50542 4.50936 4.62722 4.71552 4.73603 4.83487 4.88094 4.91437 5.01107 5.05759 5.19261 5.29134 5.38783 5.56150 5.63602 5.66315 5.84435 6.00080 6.04934 6.23277 6.24620 6.49217 6.68834 8.00340 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014446 B = 0.004392 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.767483 B = 6374.071121 C = 6680.162119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.391 6.391 4 C 0.054 3.946 5 H 0.104 0.896 6 C 0.026 3.974 7 O -0.384 6.384 8 C 0.038 3.962 9 C 0.125 3.875 10 H 0.105 0.895 11 N -1.098 6.098 12 S 2.715 3.285 13 O -1.002 7.002 14 O -0.993 6.993 15 C -0.781 4.781 16 C 0.002 3.998 17 C -0.247 4.247 18 C -0.039 4.039 19 C -0.257 4.257 20 C 0.151 3.849 21 C -0.463 4.463 22 H 0.093 0.907 23 C 0.060 3.940 24 N -0.810 5.810 25 Si 0.947 3.053 26 H -0.246 1.246 27 H -0.277 1.277 28 H -0.257 1.257 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.423 0.577 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.109 0.891 43 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.943 -3.891 6.016 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.310 6.310 4 C -0.006 4.006 5 H 0.122 0.878 6 C -0.051 4.051 7 O -0.302 6.302 8 C -0.040 4.040 9 C 0.016 3.984 10 H 0.123 0.877 11 N -0.857 5.857 12 S 2.812 3.188 13 O -0.992 6.992 14 O -0.983 6.983 15 C -0.875 4.875 16 C -0.018 4.018 17 C -0.267 4.267 18 C -0.058 4.058 19 C -0.276 4.276 20 C 0.147 3.853 21 C -0.490 4.490 22 H 0.110 0.890 23 C -0.160 4.160 24 N -0.434 5.434 25 Si 0.771 3.229 26 H -0.171 1.171 27 H -0.203 1.203 28 H -0.181 1.181 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.259 0.741 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.126 0.874 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.263 -4.013 5.433 11.464 hybrid contribution 1.375 0.360 -0.142 1.428 sum -7.888 -3.654 5.291 10.176 Atomic orbital electron populations 1.21772 0.92793 1.03505 1.02659 1.22846 0.96587 0.82578 1.01278 1.87968 1.19567 1.28555 1.94948 1.23716 0.82744 0.97951 0.96159 0.87840 1.24077 1.02089 0.82565 0.96357 1.89153 1.85579 1.21376 1.34107 1.23899 0.98339 0.99497 0.82294 1.22056 0.92300 0.96522 0.87478 0.87669 1.55377 1.48915 1.49925 1.31502 1.00562 0.71798 0.74068 0.72394 1.93456 1.35312 1.88041 1.82438 1.93522 1.60553 1.79909 1.64334 1.30076 1.04865 1.20980 1.31597 1.20739 0.97018 0.92939 0.91062 1.20982 0.97563 0.96237 1.11955 1.21288 0.93237 0.98582 0.92648 1.21374 1.00239 0.94083 1.11943 1.17184 0.90248 0.93027 0.84864 1.19870 0.91474 0.97498 1.40207 0.88957 1.26679 0.96268 1.00155 0.92886 1.69632 1.04329 1.36634 1.32756 0.85771 0.78273 0.78798 0.80100 1.17110 1.20303 1.18140 0.91895 0.92920 0.88770 0.92807 0.91261 0.86803 0.89550 0.90948 0.88678 0.74084 0.85431 0.84554 0.84556 0.87355 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.04 0.82 6.50 71.98 0.47 1.29 16 3 O -0.39 -10.40 9.99 -148.98 -1.49 -11.89 16 4 C 0.05 1.39 3.37 31.61 0.11 1.50 16 5 H 0.10 2.22 7.53 -2.39 -0.02 2.21 16 6 C 0.03 0.62 7.39 72.49 0.54 1.15 16 7 O -0.38 -11.93 11.65 -148.98 -1.74 -13.67 16 8 C 0.04 1.25 7.37 72.49 0.53 1.78 16 9 C 0.12 3.95 3.60 46.01 0.17 4.12 16 10 H 0.11 3.58 7.42 -2.39 -0.02 3.56 16 11 N -1.10 -37.73 4.49 -165.16 -0.74 -38.48 16 12 S 2.72 114.81 4.93 -56.49 -0.28 114.53 16 13 O -1.00 -43.79 16.35 -128.00 -2.09 -45.88 16 14 O -0.99 -48.80 16.70 -128.00 -2.14 -50.94 16 15 C -0.78 -34.38 5.94 22.73 0.13 -34.24 16 16 C 0.00 0.08 9.53 22.22 0.21 0.30 16 17 C -0.25 -8.95 10.05 22.46 0.23 -8.73 16 18 C -0.04 -1.46 10.02 22.22 0.22 -1.23 16 19 C -0.26 -11.09 7.13 22.73 0.16 -10.93 16 20 C 0.15 7.09 5.11 -21.29 -0.11 6.98 16 21 C -0.46 -23.03 8.14 23.46 0.19 -22.84 16 22 H 0.09 4.58 5.93 -2.91 -0.02 4.56 16 23 C 0.06 2.96 5.42 85.26 0.46 3.43 16 24 N -0.81 -39.97 13.93 21.83 0.30 -39.67 16 25 Si 0.95 39.91 24.49 68.60 1.68 41.59 16 26 H -0.25 -9.43 6.71 99.48 0.67 -8.77 16 27 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.26 -11.48 6.82 99.48 0.68 -10.80 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 0.98 8.11 -2.39 -0.02 0.96 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 2.25 8.09 -2.39 -0.02 2.23 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 2.50 8.06 -2.39 -0.02 2.48 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.42 13.08 8.46 -96.75 -0.82 12.26 16 39 H 0.13 4.68 7.33 -2.91 -0.02 4.65 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 42 H 0.11 4.56 4.68 -2.91 -0.01 4.55 16 43 H 0.30 13.30 8.30 -92.71 -0.77 12.54 16 Total: -1.00 -64.35 361.87 -2.28 -66.63 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: 0.16 Total: 36.94 kcal Atomic # 6 Polarization: -63.22 SS G_CDS: 4.05 Total: -59.17 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -0.44 Total: -78.14 kcal Atomic # 8 Polarization: -114.92 SS G_CDS: -7.45 Total: -122.38 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.68 Total: 41.59 kcal Atomic # 16 Polarization: 114.81 SS G_CDS: -0.28 Total: 114.53 kcal Total: -64.35 -2.28 -66.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601434788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.993 kcal (2) G-P(sol) polarization free energy of solvation -64.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds