Wall clock time and date at job start Sat Apr 11 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00404 * 2 1 4 4 C 1.52997 * 109.46874 * 274.99855 * 3 2 1 5 5 H 1.08998 * 109.52851 * 305.12728 * 4 3 2 6 6 C 1.53147 * 109.52523 * 184.99921 * 4 3 2 7 7 O 1.43076 * 109.15073 * 184.78528 * 6 4 3 8 8 C 1.43068 * 113.59467 * 57.95447 * 7 6 4 9 9 C 1.53147 * 109.14853 * 302.04675 * 8 7 6 10 10 O 1.43067 * 109.15310 * 55.31136 * 9 8 7 11 11 S 1.65609 * 119.99752 * 179.97438 * 2 1 3 12 12 O 1.42104 * 106.39884 * 345.87268 * 11 2 1 13 13 O 1.42104 * 106.40057 * 212.95560 * 11 2 1 14 14 C 1.76193 * 107.21835 * 99.41417 * 11 2 1 15 15 C 1.37633 * 120.12798 * 113.94388 * 14 11 2 16 16 C 1.38620 * 120.24704 * 179.97438 * 15 14 11 17 17 C 1.38654 * 120.50116 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.24943 * 0.02562 * 17 16 15 19 19 C 1.40704 * 120.12626 * 293.92673 * 14 11 2 20 20 C 1.41388 * 120.24415 * 359.97438 * 19 14 11 21 21 H 1.08002 * 120.00511 * 328.69553 * 20 19 14 22 22 C 1.39946 * 120.00023 * 148.69494 * 20 19 14 23 23 N 1.30818 * 119.99933 * 348.17284 * 22 20 19 24 24 Si 1.86801 * 120.00183 * 168.16591 * 22 20 19 25 25 H 1.48502 * 109.46869 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47078 * 119.99952 * 24 22 20 27 27 H 1.48494 * 109.47537 * 240.00722 * 24 22 20 28 28 H 1.08998 * 109.47149 * 273.84502 * 1 2 3 29 29 H 1.09006 * 109.46521 * 33.83929 * 1 2 3 30 30 H 1.08997 * 109.47159 * 153.83849 * 1 2 3 31 31 H 1.09002 * 109.47392 * 34.99373 * 3 2 1 32 32 H 1.09002 * 109.47585 * 154.99667 * 3 2 1 33 33 H 1.08999 * 109.52214 * 304.68901 * 6 4 3 34 34 H 1.09002 * 109.52467 * 64.81640 * 6 4 3 35 35 H 1.09003 * 109.52974 * 61.94688 * 8 7 6 36 36 H 1.08997 * 109.52678 * 182.08068 * 8 7 6 37 37 H 1.09002 * 109.52572 * 175.21524 * 9 8 7 38 38 H 1.08999 * 109.52214 * 295.40790 * 9 8 7 39 39 H 1.07994 * 119.87733 * 359.97438 * 15 14 11 40 40 H 1.08006 * 119.74433 * 180.02562 * 16 15 14 41 41 H 1.08006 * 119.87276 * 180.28199 * 17 16 15 42 42 H 1.08001 * 120.12357 * 179.97438 * 18 17 16 43 43 H 0.97004 * 120.00302 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3437 1.7731 -1.4370 5 1 2.8098 1.0006 -2.0487 6 6 3.2152 3.0323 -1.4513 7 8 3.2550 3.5605 -2.7804 8 6 1.9641 3.8772 -3.3096 9 6 1.0926 2.6180 -3.2953 10 8 1.0528 2.0897 -1.9664 11 16 2.2930 -1.4342 0.0006 12 8 1.3486 -2.4425 0.3338 13 8 3.4842 -1.2095 0.7421 14 6 2.7921 -1.7491 -1.6595 15 6 4.1278 -1.7471 -1.9915 16 6 4.5233 -1.9950 -3.2967 17 6 3.5808 -2.2479 -4.2817 18 6 2.2400 -2.2549 -3.9726 19 6 1.8268 -2.0038 -2.6510 20 6 0.4518 -2.0093 -2.3215 21 1 0.1335 -2.3211 -1.3377 22 6 -0.4966 -1.6106 -3.2701 23 7 -0.1116 -1.0179 -4.3709 24 14 -2.3125 -1.9251 -2.9647 25 1 -2.4838 -2.6045 -1.6554 26 1 -3.0432 -0.6323 -2.9504 27 1 -2.8541 -2.7879 -4.0451 28 1 -0.3633 0.0689 1.0253 29 1 -0.3632 0.8537 -0.5723 30 1 -0.3633 -0.9224 -0.4531 31 1 1.6502 2.0043 0.5894 32 1 3.1858 1.1176 0.4344 33 1 2.7918 3.7760 -0.7762 34 1 4.2252 2.7801 -1.1281 35 1 1.4985 4.6494 -2.6971 36 1 2.0683 4.2377 -4.3330 37 1 0.0823 2.8704 -3.6174 38 1 1.5160 1.8743 -3.9704 39 1 4.8706 -1.5517 -1.2322 40 1 5.5737 -1.9918 -3.5481 41 1 3.9005 -2.4443 -5.2945 42 1 1.5076 -2.4517 -4.7415 43 1 -0.7690 -0.7412 -5.0284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601466137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:56 Heat of formation + Delta-G solvation = -156.052677 kcal Electronic energy + Delta-G solvation = -30519.880633 eV Core-core repulsion = 26463.519442 eV Total energy + Delta-G solvation = -4056.361191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83955 -39.36459 -38.15892 -37.57386 -36.71256 -36.42832 -35.59518 -32.86058 -31.98710 -31.34356 -29.74673 -27.78973 -27.12429 -25.79733 -23.92339 -23.33444 -22.91070 -21.97802 -19.81005 -19.42518 -18.77981 -17.88102 -17.65684 -17.36873 -17.24071 -17.05618 -16.63628 -16.21719 -16.04566 -15.95091 -15.39504 -14.98379 -14.91765 -14.48613 -14.44318 -14.21927 -13.89878 -13.68233 -13.51451 -13.34199 -13.08969 -12.98345 -12.90632 -12.86627 -12.79252 -12.59764 -12.46566 -12.24611 -12.13814 -11.98609 -11.61379 -11.57006 -11.31392 -11.13120 -10.97075 -10.16698 -9.80625 -9.66755 -9.37039 -8.74656 -6.55783 -0.18913 0.55820 0.99198 1.38681 1.47168 1.51895 2.17946 2.23456 2.65959 2.76614 2.82555 2.99725 3.48795 3.64571 3.72921 3.96263 3.98791 4.11374 4.18122 4.25768 4.32195 4.43494 4.48889 4.58219 4.59574 4.63602 4.72397 4.79334 4.87635 4.92909 4.99572 5.04771 5.15206 5.24352 5.27990 5.31984 5.57201 5.70158 5.82089 5.89879 6.01513 6.05000 6.17464 6.20576 6.54929 6.76234 6.86541 8.22004 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008933 B = 0.007243 C = 0.006268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.798724 B = 3864.632314 C = 4466.102305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.983 5.983 3 C 0.127 3.873 4 C 0.035 3.965 5 H 0.041 0.959 6 C 0.034 3.966 7 O -0.399 6.399 8 C 0.030 3.970 9 C 0.029 3.971 10 O -0.371 6.371 11 S 2.714 3.286 12 O -0.999 6.999 13 O -1.004 7.004 14 C -0.791 4.791 15 C -0.016 4.016 16 C -0.251 4.251 17 C -0.078 4.078 18 C -0.182 4.182 19 C 0.175 3.825 20 C -0.493 4.493 21 H 0.106 0.894 22 C 0.061 3.939 23 N -0.792 5.792 24 Si 0.950 3.050 25 H -0.257 1.257 26 H -0.253 1.253 27 H -0.265 1.265 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.030 0.970 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 10.427 2.069 10.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.819 5.819 3 C 0.002 3.998 4 C -0.025 4.025 5 H 0.059 0.941 6 C -0.043 4.043 7 O -0.318 6.318 8 C -0.047 4.047 9 C -0.048 4.048 10 O -0.290 6.290 11 S 2.811 3.189 12 O -0.989 6.989 13 O -0.995 6.995 14 C -0.885 4.885 15 C -0.035 4.035 16 C -0.271 4.271 17 C -0.097 4.097 18 C -0.201 4.201 19 C 0.171 3.829 20 C -0.520 4.520 21 H 0.124 0.876 22 C -0.159 4.159 23 N -0.415 5.415 24 Si 0.771 3.229 25 H -0.180 1.180 26 H -0.177 1.177 27 H -0.189 1.189 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.049 0.951 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.549 10.048 2.638 10.403 hybrid contribution -0.622 -0.382 -1.369 1.551 sum -1.171 9.666 1.269 9.819 Atomic orbital electron populations 1.21789 0.77658 1.04459 1.01689 1.56934 1.15577 1.20029 1.89369 1.21505 0.98727 0.85773 0.93834 1.23328 0.85485 0.96875 0.96847 0.94114 1.23306 1.02092 0.94425 0.84515 1.88044 1.29064 1.83594 1.31137 1.23346 0.83790 0.96104 1.01427 1.23156 1.02003 0.95002 0.84623 1.88033 1.27544 1.83823 1.29613 1.00633 0.71710 0.72541 0.74035 1.93428 1.63187 1.57690 1.84633 1.93405 1.48642 1.86135 1.71306 1.30190 1.01560 1.33167 1.23612 1.20537 0.93451 0.92891 0.96660 1.20844 0.98835 1.14062 0.93350 1.21206 0.93511 0.96467 0.98521 1.21465 0.94907 1.06179 0.97588 1.17227 0.92083 0.82769 0.90869 1.20518 0.91135 1.38595 1.01779 0.87649 1.26454 1.04931 0.91278 0.93279 1.69811 1.38596 1.25397 1.07686 0.85606 0.77135 0.79969 0.80193 1.18045 1.17652 1.18933 0.91628 0.90041 0.91212 0.86402 0.87152 0.89594 0.86569 0.90450 0.86628 0.87136 0.95149 0.86119 0.85840 0.86433 0.87403 0.89676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.10 9.77 127.77 1.25 4.35 16 2 N -0.98 -36.15 3.15 -539.14 -1.70 -37.85 16 3 C 0.13 3.78 5.42 86.38 0.47 4.25 16 4 C 0.03 1.12 3.09 30.64 0.09 1.22 16 5 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 6 C 0.03 0.87 6.34 72.03 0.46 1.33 16 7 O -0.40 -11.66 10.85 -136.00 -1.48 -13.13 16 8 C 0.03 0.73 7.05 72.03 0.51 1.24 16 9 C 0.03 0.90 7.05 72.03 0.51 1.40 16 10 O -0.37 -12.54 8.84 -136.00 -1.20 -13.75 16 11 S 2.71 119.75 5.07 -56.49 -0.29 119.46 16 12 O -1.00 -49.20 14.57 -128.00 -1.86 -51.07 16 13 O -1.00 -44.39 15.75 -128.00 -2.02 -46.41 16 14 C -0.79 -37.83 5.43 22.73 0.12 -37.71 16 15 C -0.02 -0.70 9.54 22.22 0.21 -0.49 16 16 C -0.25 -10.68 10.05 22.46 0.23 -10.46 16 17 C -0.08 -3.47 10.02 22.22 0.22 -3.25 16 18 C -0.18 -9.02 8.64 22.73 0.20 -8.82 16 19 C 0.18 8.91 5.51 -21.29 -0.12 8.79 16 20 C -0.49 -24.48 6.52 23.46 0.15 -24.33 16 21 H 0.11 5.38 3.96 -2.91 -0.01 5.37 16 22 C 0.06 2.76 5.22 85.26 0.44 3.21 16 23 N -0.79 -36.46 11.09 21.83 0.24 -36.22 16 24 Si 0.95 35.39 29.58 68.60 2.03 37.42 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 27 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.70 6.62 -2.38 -0.02 2.69 16 30 H 0.07 2.80 4.40 -2.39 -0.01 2.79 16 31 H 0.12 2.69 8.11 -2.39 -0.02 2.68 16 32 H 0.11 3.04 7.07 -2.39 -0.02 3.03 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 4.93 7.32 -2.91 -0.02 4.91 16 40 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.11 5.47 6.47 -2.91 -0.02 5.46 16 43 H 0.29 12.12 8.30 -92.71 -0.77 11.35 16 Total: -1.00 -63.32 352.79 -0.49 -63.81 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 1.04 Total: 37.00 kcal Atomic # 6 Polarization: -64.02 SS G_CDS: 4.74 Total: -59.27 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.46 Total: -74.07 kcal Atomic # 8 Polarization: -117.80 SS G_CDS: -6.56 Total: -124.35 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Atomic # 16 Polarization: 119.75 SS G_CDS: -0.29 Total: 119.46 kcal Total: -63.32 -0.49 -63.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601466137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.240 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds