Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46663 * 2 1 4 4 C 1.53001 * 109.47086 * 240.00139 * 2 1 3 5 5 C 1.53007 * 109.46818 * 64.99572 * 4 2 1 6 6 C 1.50706 * 109.46688 * 180.02562 * 5 4 2 7 7 O 1.20828 * 120.00111 * 359.97438 * 6 5 4 8 8 O 1.34225 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47429 * 120.00059 * 2 1 3 10 10 N 1.46505 * 109.47010 * 294.99853 * 9 2 1 11 11 S 1.65602 * 120.00094 * 164.99673 * 10 9 2 12 12 O 1.42095 * 106.40464 * 178.53849 * 11 10 9 13 13 O 1.42102 * 106.40003 * 311.46651 * 11 10 9 14 14 C 1.76207 * 107.21268 * 65.00353 * 11 10 9 15 15 C 1.38661 * 119.87051 * 269.72300 * 14 11 10 16 16 C 1.38616 * 120.49253 * 179.72445 * 15 14 11 17 17 C 1.37636 * 120.25124 * 0.55632 * 16 15 14 18 18 C 1.40697 * 119.74663 * 359.72350 * 17 16 15 19 19 C 1.41396 * 120.24648 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99655 * 204.37972 * 19 18 17 21 21 C 1.39938 * 119.99844 * 24.37649 * 19 18 17 22 22 N 1.30828 * 120.00355 * 17.87158 * 21 19 18 23 23 Si 1.86797 * 119.99921 * 197.87234 * 21 19 18 24 24 H 1.48499 * 109.47363 * 90.00100 * 23 21 19 25 25 H 1.48508 * 109.47188 * 210.00262 * 23 21 19 26 26 H 1.48501 * 109.47062 * 329.99719 * 23 21 19 27 27 C 1.37595 * 119.87700 * 90.00217 * 14 11 10 28 28 H 1.09002 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46967 * 299.99979 * 1 2 3 30 30 H 1.08994 * 109.47425 * 59.99732 * 1 2 3 31 31 H 1.08997 * 109.46996 * 184.99877 * 4 2 1 32 32 H 1.08999 * 109.47032 * 305.00183 * 4 2 1 33 33 H 1.08996 * 109.47069 * 299.99846 * 5 4 2 34 34 H 1.08999 * 109.46820 * 60.00481 * 5 4 2 35 35 H 0.96699 * 116.99910 * 180.02562 * 8 6 5 36 36 H 1.08999 * 109.47006 * 54.99837 * 9 2 1 37 37 H 1.08999 * 109.47370 * 175.00001 * 9 2 1 38 38 H 0.97001 * 119.99753 * 345.00403 * 10 9 2 39 39 H 1.07997 * 119.75484 * 0.02562 * 15 14 11 40 40 H 1.08005 * 119.87314 * 180.25747 * 16 15 14 41 41 H 1.08007 * 120.12568 * 179.74728 * 17 16 15 42 42 H 0.96999 * 119.99924 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.12640 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6351 0.0690 -2.4953 6 6 2.1369 -0.6417 -3.7259 7 8 2.7553 -1.6741 -3.6173 8 8 1.8977 -0.1274 -4.9424 9 6 2.0401 -0.7212 1.2492 10 7 1.6525 0.0354 2.4424 11 16 1.7357 -0.6744 3.9362 12 8 1.3328 0.3147 4.8735 13 8 1.0963 -1.9378 3.8162 14 6 3.4353 -1.0058 4.2622 15 6 3.9863 -2.2216 3.8866 16 6 5.3232 -2.4936 4.1316 17 6 6.1162 -1.5619 4.7620 18 6 5.5664 -0.3271 5.1528 19 6 6.3715 0.6379 5.8006 20 1 5.9158 1.3821 6.4369 21 6 7.7588 0.6286 5.6174 22 7 8.2809 -0.0173 4.6065 23 14 8.8654 1.5386 6.8160 24 1 9.2549 0.6259 7.9208 25 1 10.0838 2.0065 6.1075 26 1 8.1372 2.7070 7.3727 27 6 4.2093 -0.0596 4.8937 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.1263 -0.7994 -1.2056 32 1 1.6053 -1.7197 -1.2952 33 1 0.5488 0.1471 -2.5389 34 1 2.0697 1.0675 -2.4494 35 1 2.2391 -0.6192 -5.7018 36 1 1.6054 -1.7198 1.2951 37 1 3.1264 -0.7994 1.2055 38 1 1.3472 0.9522 2.3573 39 1 3.3704 -2.9601 3.3951 40 1 5.7430 -3.4422 3.8310 41 1 7.1566 -1.7776 4.9555 42 1 9.2425 -0.0234 4.4793 43 1 3.7770 0.8851 5.1891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = -173.564755 kcal Electronic energy + Delta-G solvation = -27050.200375 eV Core-core repulsion = 22993.079804 eV Total energy + Delta-G solvation = -4057.120571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.54244 -37.74113 -37.61632 -36.62959 -36.37590 -35.29453 -33.90777 -33.82526 -30.37293 -30.07863 -29.78502 -26.73504 -25.49363 -24.75866 -21.89861 -21.48883 -20.98381 -20.34409 -19.03188 -18.34256 -17.92648 -17.14999 -16.60716 -16.52547 -15.99860 -15.86696 -15.29960 -15.12445 -14.75502 -14.43628 -14.18134 -13.63517 -13.46825 -13.37653 -13.19579 -12.80038 -12.57754 -12.48143 -11.98180 -11.88842 -11.86017 -11.74203 -11.60553 -11.52021 -11.40208 -11.38209 -11.08017 -11.00024 -10.89848 -10.88090 -10.84521 -10.76835 -10.60749 -9.78469 -9.65765 -9.36215 -9.12688 -8.04107 -7.70935 -6.93396 -4.54121 1.04125 1.92882 2.19623 2.62866 2.73946 2.99514 3.03589 3.06551 3.59097 3.82362 4.23961 4.37313 4.43608 4.60208 4.67752 4.84426 4.93906 5.04073 5.17804 5.25982 5.38960 5.43492 5.53250 5.62066 5.68750 5.83620 5.89249 5.98042 6.06034 6.14394 6.17962 6.21064 6.25920 6.65495 6.76132 6.84664 7.02813 7.19665 7.24424 7.38384 7.59396 7.72931 7.80772 7.94117 8.40042 8.66549 8.71466 10.02035 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.002879 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.850185 B = 9722.840140 C =11228.007214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 H 0.082 0.918 4 C -0.107 4.107 5 C -0.114 4.114 6 C 0.476 3.524 7 O -0.513 6.513 8 O -0.522 6.522 9 C 0.123 3.877 10 N -1.120 6.120 11 S 2.690 3.310 12 O -0.974 6.974 13 O -0.975 6.975 14 C -0.632 4.632 15 C -0.149 4.149 16 C -0.120 4.120 17 C -0.119 4.119 18 C 0.091 3.909 19 C -0.461 4.461 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.794 5.794 23 Si 0.912 3.088 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.124 4.124 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.413 0.587 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 1.898 -14.209 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.145 4.145 5 C -0.151 4.151 6 C 0.318 3.682 7 O -0.400 6.400 8 O -0.334 6.334 9 C -0.003 4.003 10 N -0.878 5.878 11 S 2.786 3.214 12 O -0.964 6.964 13 O -0.965 6.965 14 C -0.724 4.724 15 C -0.170 4.170 16 C -0.140 4.140 17 C -0.138 4.138 18 C 0.087 3.913 19 C -0.490 4.490 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.419 5.419 23 Si 0.736 3.264 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.184 1.184 27 C -0.145 4.145 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.268 0.732 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.246 0.754 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.031 1.415 -13.404 16.801 hybrid contribution 1.622 0.447 -0.316 1.712 sum -8.409 1.862 -13.720 16.199 Atomic orbital electron populations 1.21952 0.94665 1.02585 1.01894 1.21330 0.96498 1.00368 0.93441 0.89947 1.21473 1.02794 0.99306 0.90969 1.21465 1.03805 1.00822 0.89040 1.23667 0.76307 0.83386 0.84832 1.90758 1.37983 1.24124 1.87182 1.84540 1.74999 1.56539 1.17292 1.21288 1.00262 0.95188 0.83596 1.55536 1.83464 1.25914 1.22904 1.01600 0.75033 0.72981 0.71781 1.93535 1.82587 1.60637 1.59687 1.93510 1.74420 1.42699 1.85910 1.29739 1.22715 1.03731 1.16192 1.20093 0.95612 0.95357 1.05947 1.20816 0.93815 0.98532 1.00827 1.21644 0.99972 0.92587 0.99644 1.17690 0.90978 0.92238 0.90345 1.19627 0.91144 1.12940 1.25274 0.89901 1.25932 0.99060 0.94709 0.94602 1.69782 1.14098 1.34295 1.23734 0.86242 0.79050 0.80346 0.80751 1.19149 1.20226 1.18435 1.20773 0.95218 0.97058 1.01482 0.92109 0.92057 0.92491 0.90174 0.90364 0.87364 0.87433 0.73220 0.90225 0.91019 0.75370 0.87576 0.88388 0.85760 0.90587 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.83 37.16 0.33 -0.88 16 2 C -0.10 -0.85 2.41 -90.62 -0.22 -1.06 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.11 -0.92 3.97 -26.73 -0.11 -1.03 16 5 C -0.11 -0.76 5.57 -27.88 -0.16 -0.92 16 6 C 0.48 4.16 8.33 36.01 0.30 4.46 16 7 O -0.51 -6.40 16.74 -18.75 -0.31 -6.72 16 8 O -0.52 -3.42 13.42 -39.24 -0.53 -3.95 16 9 C 0.12 1.49 5.61 -4.04 -0.02 1.47 16 10 N -1.12 -15.20 5.53 -10.61 -0.06 -15.26 16 11 S 2.69 49.15 5.74 -107.50 -0.62 48.54 16 12 O -0.97 -20.07 17.26 -57.17 -0.99 -21.06 16 13 O -0.98 -19.46 16.73 -57.17 -0.96 -20.42 16 14 C -0.63 -13.60 5.94 -39.66 -0.24 -13.84 16 15 C -0.15 -3.20 9.53 -39.29 -0.37 -3.57 16 16 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 17 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 18 C 0.09 2.34 5.58 -106.83 -0.60 1.74 16 19 C -0.46 -11.76 9.05 -37.74 -0.34 -12.10 16 20 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 21 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 22 N -0.79 -19.50 10.95 55.55 0.61 -18.90 16 23 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 27 C -0.12 -2.95 9.26 -38.87 -0.36 -3.31 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 7.54 -51.93 -0.39 0.12 16 30 H 0.06 0.34 6.56 -51.93 -0.34 -0.01 16 31 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.11 0.54 6.56 -51.93 -0.34 0.20 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.41 1.14 9.10 45.56 0.41 1.56 16 36 H 0.08 0.99 7.75 -51.93 -0.40 0.58 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 4.58 8.37 -34.47 -0.29 4.30 16 39 H 0.11 2.05 7.59 -52.49 -0.40 1.65 16 40 H 0.10 1.92 8.06 -52.48 -0.42 1.49 16 41 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 42 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 43 H 0.11 2.54 7.60 -52.48 -0.40 2.14 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -33.42 375.51 -9.80 -43.22 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.97 Total: 9.60 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: -2.61 Total: -33.69 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.55 Total: -34.15 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -2.78 Total: -52.14 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.62 Total: 48.54 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.42 -9.80 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.341 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds