Wall clock time and date at job start Sat Apr 11 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46663 * 2 1 4 4 C 1.53001 * 109.47086 * 240.00139 * 2 1 3 5 5 C 1.53007 * 109.46818 * 64.99572 * 4 2 1 6 6 C 1.50706 * 109.46688 * 180.02562 * 5 4 2 7 7 O 1.20828 * 120.00111 * 359.97438 * 6 5 4 8 8 O 1.34225 * 119.99980 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47429 * 120.00059 * 2 1 3 10 10 N 1.46505 * 109.47010 * 294.99853 * 9 2 1 11 11 S 1.65602 * 120.00094 * 164.99673 * 10 9 2 12 12 O 1.42095 * 106.40464 * 178.53849 * 11 10 9 13 13 O 1.42102 * 106.40003 * 311.46651 * 11 10 9 14 14 C 1.76207 * 107.21268 * 65.00353 * 11 10 9 15 15 C 1.38661 * 119.87051 * 269.72300 * 14 11 10 16 16 C 1.38616 * 120.49253 * 179.72445 * 15 14 11 17 17 C 1.37636 * 120.25124 * 0.55632 * 16 15 14 18 18 C 1.40697 * 119.74663 * 359.72350 * 17 16 15 19 19 C 1.41396 * 120.24648 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99655 * 204.37972 * 19 18 17 21 21 C 1.39938 * 119.99844 * 24.37649 * 19 18 17 22 22 N 1.30828 * 120.00355 * 17.87158 * 21 19 18 23 23 Si 1.86797 * 119.99921 * 197.87234 * 21 19 18 24 24 H 1.48499 * 109.47363 * 90.00100 * 23 21 19 25 25 H 1.48508 * 109.47188 * 210.00262 * 23 21 19 26 26 H 1.48501 * 109.47062 * 329.99719 * 23 21 19 27 27 C 1.37595 * 119.87700 * 90.00217 * 14 11 10 28 28 H 1.09002 * 109.47282 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46967 * 299.99979 * 1 2 3 30 30 H 1.08994 * 109.47425 * 59.99732 * 1 2 3 31 31 H 1.08997 * 109.46996 * 184.99877 * 4 2 1 32 32 H 1.08999 * 109.47032 * 305.00183 * 4 2 1 33 33 H 1.08996 * 109.47069 * 299.99846 * 5 4 2 34 34 H 1.08999 * 109.46820 * 60.00481 * 5 4 2 35 35 H 0.96699 * 116.99910 * 180.02562 * 8 6 5 36 36 H 1.08999 * 109.47006 * 54.99837 * 9 2 1 37 37 H 1.08999 * 109.47370 * 175.00001 * 9 2 1 38 38 H 0.97001 * 119.99753 * 345.00403 * 10 9 2 39 39 H 1.07997 * 119.75484 * 0.02562 * 15 14 11 40 40 H 1.08005 * 119.87314 * 180.25747 * 16 15 14 41 41 H 1.08007 * 120.12568 * 179.74728 * 17 16 15 42 42 H 0.96999 * 119.99924 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.12640 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6351 0.0690 -2.4953 6 6 2.1369 -0.6417 -3.7259 7 8 2.7553 -1.6741 -3.6173 8 8 1.8977 -0.1274 -4.9424 9 6 2.0401 -0.7212 1.2492 10 7 1.6525 0.0354 2.4424 11 16 1.7357 -0.6744 3.9362 12 8 1.3328 0.3147 4.8735 13 8 1.0963 -1.9378 3.8162 14 6 3.4353 -1.0058 4.2622 15 6 3.9863 -2.2216 3.8866 16 6 5.3232 -2.4936 4.1316 17 6 6.1162 -1.5619 4.7620 18 6 5.5664 -0.3271 5.1528 19 6 6.3715 0.6379 5.8006 20 1 5.9158 1.3821 6.4369 21 6 7.7588 0.6286 5.6174 22 7 8.2809 -0.0173 4.6065 23 14 8.8654 1.5386 6.8160 24 1 9.2549 0.6259 7.9208 25 1 10.0838 2.0065 6.1075 26 1 8.1372 2.7070 7.3727 27 6 4.2093 -0.0596 4.8937 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.1263 -0.7994 -1.2056 32 1 1.6053 -1.7197 -1.2952 33 1 0.5488 0.1471 -2.5389 34 1 2.0697 1.0675 -2.4494 35 1 2.2391 -0.6192 -5.7018 36 1 1.6054 -1.7198 1.2951 37 1 3.1264 -0.7994 1.2055 38 1 1.3472 0.9522 2.3573 39 1 3.3704 -2.9601 3.3951 40 1 5.7430 -3.4422 3.8310 41 1 7.1566 -1.7776 4.9555 42 1 9.2425 -0.0234 4.4793 43 1 3.7770 0.8851 5.1891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:22 Heat of formation + Delta-G solvation = -197.158705 kcal Electronic energy + Delta-G solvation = -27051.223486 eV Core-core repulsion = 22993.079804 eV Total energy + Delta-G solvation = -4058.143682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20931 -39.44403 -38.58361 -38.14075 -37.05396 -36.88601 -35.67044 -34.83365 -31.91268 -31.58404 -31.08660 -27.49443 -27.32196 -25.58959 -23.65943 -22.81154 -22.14832 -21.14403 -20.45389 -19.59673 -18.99851 -18.38453 -17.75527 -17.50643 -17.20127 -17.08456 -16.79835 -16.56147 -16.05150 -15.81438 -15.22615 -15.05855 -14.91579 -14.34049 -14.30385 -13.98105 -13.72547 -13.64229 -13.30811 -13.19683 -13.10106 -13.06747 -13.03730 -12.94775 -12.79501 -12.60896 -12.57348 -12.44511 -12.20973 -11.83432 -11.58216 -11.57426 -11.54524 -11.52601 -11.32994 -11.15007 -10.38145 -9.84756 -9.56275 -8.73430 -6.45282 -0.45728 0.41280 0.84235 1.28252 1.37228 1.46351 1.50189 2.11976 2.17324 2.28177 2.55851 2.80833 3.47211 3.53255 3.71837 3.95092 4.04142 4.12951 4.30910 4.34543 4.44837 4.53643 4.65841 4.69043 4.74538 4.84098 4.84714 4.90378 4.96486 5.07316 5.11876 5.18031 5.19103 5.22282 5.41439 5.45968 5.55487 5.56800 5.70085 5.89153 5.94120 6.09926 6.18565 6.52630 6.79730 6.84683 7.04731 8.24377 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.002879 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.850185 B = 9722.840140 C =11228.007214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 H 0.098 0.902 4 C -0.105 4.105 5 C -0.110 4.110 6 C 0.479 3.521 7 O -0.559 6.559 8 O -0.516 6.516 9 C 0.112 3.888 10 N -1.101 6.101 11 S 2.722 3.278 12 O -0.996 6.996 13 O -0.987 6.987 14 C -0.639 4.639 15 C -0.149 4.149 16 C -0.123 4.123 17 C -0.143 4.143 18 C 0.062 3.938 19 C -0.498 4.498 20 H 0.079 0.921 21 C 0.038 3.962 22 N -0.821 5.821 23 Si 0.983 3.017 24 H -0.263 1.263 25 H -0.265 1.265 26 H -0.259 1.259 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.425 0.575 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.427 0.573 39 H 0.131 0.869 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.292 0.708 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 2.799 -15.493 18.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.107 4.107 3 H 0.116 0.884 4 C -0.143 4.143 5 C -0.147 4.147 6 C 0.323 3.677 7 O -0.451 6.451 8 O -0.330 6.330 9 C -0.014 4.014 10 N -0.864 5.864 11 S 2.813 3.187 12 O -0.986 6.986 13 O -0.977 6.977 14 C -0.727 4.727 15 C -0.169 4.169 16 C -0.142 4.142 17 C -0.162 4.162 18 C 0.059 3.941 19 C -0.527 4.527 20 H 0.097 0.903 21 C -0.178 4.178 22 N -0.446 5.446 23 Si 0.804 3.196 24 H -0.187 1.187 25 H -0.190 1.190 26 H -0.183 1.183 27 C -0.165 4.165 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.286 0.714 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.264 0.736 39 H 0.149 0.851 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.046 2.322 -14.704 18.537 hybrid contribution 1.831 0.116 -0.075 1.837 sum -9.215 2.437 -14.780 17.587 Atomic orbital electron populations 1.21997 0.93555 1.02650 1.03124 1.21274 0.97303 1.00613 0.91471 0.88357 1.21390 1.01637 0.99338 0.91976 1.21511 1.05295 1.00906 0.86981 1.24052 0.75178 0.82625 0.85810 1.90749 1.40243 1.26231 1.87835 1.84507 1.74608 1.56469 1.17383 1.21537 0.99918 0.95615 0.84313 1.55126 1.82841 1.26831 1.21609 1.00712 0.73205 0.72438 0.72297 1.93501 1.82338 1.61124 1.61635 1.93494 1.73851 1.43811 1.86504 1.30294 1.24631 1.03146 1.14619 1.20461 0.95586 0.95772 1.05127 1.21141 0.94188 0.99093 0.99809 1.21642 0.99877 0.93272 1.01451 1.18052 0.92129 0.92882 0.91084 1.19856 0.92521 1.13718 1.26564 0.90320 1.26733 0.99780 0.95387 0.95869 1.69817 1.14901 1.35111 1.24816 0.85182 0.77157 0.78979 0.78324 1.18732 1.18986 1.18264 1.20863 0.95107 0.97915 1.02650 0.92681 0.92330 0.89829 0.91926 0.91288 0.84938 0.85398 0.71390 0.90389 0.92040 0.73558 0.85132 0.85731 0.86974 0.89758 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.83 71.98 0.64 -1.35 16 2 C -0.09 -1.32 2.41 -10.79 -0.03 -1.34 16 3 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 4 C -0.10 -1.64 3.97 30.60 0.12 -1.52 16 5 C -0.11 -1.16 5.57 29.85 0.17 -1.00 16 6 C 0.48 7.60 8.33 71.24 0.59 8.20 16 7 O -0.56 -13.77 16.74 21.96 0.37 -13.40 16 8 O -0.52 -5.65 13.42 -51.37 -0.69 -6.34 16 9 C 0.11 2.56 5.61 86.38 0.48 3.04 16 10 N -1.10 -28.15 5.53 -187.49 -1.04 -29.19 16 11 S 2.72 96.89 5.74 -56.49 -0.32 96.57 16 12 O -1.00 -40.37 17.26 -128.00 -2.21 -42.58 16 13 O -0.99 -37.94 16.73 -128.00 -2.14 -40.08 16 14 C -0.64 -27.50 5.94 22.22 0.13 -27.36 16 15 C -0.15 -6.31 9.53 22.46 0.21 -6.09 16 16 C -0.12 -5.52 10.02 22.22 0.22 -5.30 16 17 C -0.14 -7.29 8.70 22.73 0.20 -7.09 16 18 C 0.06 3.29 5.58 -21.29 -0.12 3.17 16 19 C -0.50 -26.33 9.05 23.46 0.21 -26.12 16 20 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 21 C 0.04 1.85 5.14 85.25 0.44 2.29 16 22 N -0.82 -41.16 10.95 21.82 0.24 -40.92 16 23 Si 0.98 37.13 29.59 68.60 2.03 39.16 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 25 H -0.27 -9.44 7.11 99.48 0.71 -8.74 16 26 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 27 C -0.14 -7.05 9.26 22.73 0.21 -6.84 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.79 7.54 -2.38 -0.02 0.78 16 30 H 0.08 0.63 6.56 -2.39 -0.02 0.62 16 31 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.13 0.80 6.56 -2.39 -0.02 0.78 16 34 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.42 1.62 9.10 -74.06 -0.67 0.94 16 36 H 0.08 1.83 7.75 -2.39 -0.02 1.81 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.43 8.58 8.37 -96.74 -0.81 7.77 16 39 H 0.13 4.84 7.59 -2.91 -0.02 4.81 16 40 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.11 5.89 6.16 -2.91 -0.02 5.87 16 42 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 43 H 0.11 5.26 7.60 -2.91 -0.02 5.24 16 Total: -1.00 -73.51 375.51 -0.71 -74.22 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.43 Total: 29.88 kcal Atomic # 6 Polarization: -70.80 SS G_CDS: 3.48 Total: -67.31 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -0.80 Total: -70.11 kcal Atomic # 8 Polarization: -97.73 SS G_CDS: -4.67 Total: -102.40 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 96.89 SS G_CDS: -0.32 Total: 96.57 kcal Total: -73.51 -0.71 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.940 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds