Wall clock time and date at job start Sat Apr 11 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47332 * 2 1 4 4 N 1.46503 * 109.47229 * 120.00084 * 2 1 3 5 5 C 1.46493 * 119.99840 * 297.92986 * 4 2 1 6 6 H 1.08997 * 109.47480 * 6.35198 * 5 4 2 7 7 C 1.53003 * 109.47066 * 126.35059 * 5 4 2 8 8 C 1.50698 * 109.47414 * 246.35022 * 5 4 2 9 9 O 1.20825 * 119.99814 * 352.79782 * 8 5 4 10 10 O 1.34231 * 120.00304 * 172.80798 * 8 5 4 11 11 S 1.65600 * 119.99621 * 117.93335 * 4 2 1 12 12 O 1.42095 * 106.40457 * 30.25081 * 11 4 2 13 13 O 1.42106 * 106.39789 * 163.16955 * 11 4 2 14 14 C 1.76200 * 107.21711 * 276.70586 * 11 4 2 15 15 C 1.38651 * 119.87930 * 263.98982 * 14 11 4 16 16 C 1.38612 * 120.50255 * 179.72374 * 15 14 11 17 17 C 1.37634 * 120.24655 * 0.54773 * 16 15 14 18 18 C 1.40697 * 119.74701 * 359.72943 * 17 16 15 19 19 C 1.41390 * 120.24706 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00279 * 207.87687 * 19 18 17 21 21 C 1.39950 * 120.00421 * 27.86643 * 19 18 17 22 22 N 1.30829 * 119.99294 * 11.68908 * 21 19 18 23 23 Si 1.86792 * 120.00484 * 191.68489 * 21 19 18 24 24 H 1.48504 * 109.47087 * 60.00442 * 23 21 19 25 25 H 1.48504 * 109.47399 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47418 * 300.00500 * 23 21 19 27 27 C 1.37605 * 119.87128 * 84.25916 * 14 11 4 28 28 H 1.09001 * 109.46823 * 305.33139 * 1 2 3 29 29 H 1.09000 * 109.47122 * 65.33084 * 1 2 3 30 30 H 1.08998 * 109.46780 * 185.32600 * 1 2 3 31 31 H 1.08999 * 109.47094 * 240.00217 * 2 1 3 32 32 H 1.08998 * 109.47641 * 183.78510 * 3 2 1 33 33 H 1.09001 * 109.47369 * 303.78813 * 3 2 1 34 34 H 1.09007 * 109.46831 * 63.78360 * 3 2 1 35 35 H 1.08994 * 109.47401 * 186.57118 * 7 5 4 36 36 H 1.09000 * 109.46759 * 306.57418 * 7 5 4 37 37 H 1.08997 * 109.47384 * 66.56704 * 7 5 4 38 38 H 0.96699 * 117.00284 * 180.02562 * 10 8 5 39 39 H 1.08002 * 119.75014 * 359.97438 * 15 14 11 40 40 H 1.08000 * 119.87840 * 180.25409 * 16 15 14 41 41 H 1.08011 * 120.12940 * 179.74881 * 17 16 15 42 42 H 0.96999 * 119.99477 * 179.97438 * 22 21 19 43 43 H 1.07991 * 120.13062 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7023 -0.1642 2.5262 6 1 1.0088 0.6713 2.4310 7 6 1.0601 -1.2661 3.3714 8 6 2.9684 0.3074 3.1938 9 8 4.0393 0.0962 2.6757 10 8 2.9064 0.9619 4.3641 11 16 2.9278 -2.0663 1.0446 12 8 3.6402 -1.9436 -0.1787 13 8 3.5655 -2.2658 2.2988 14 6 1.8085 -3.4110 0.8360 15 6 1.4313 -4.1720 1.9319 16 6 0.5472 -5.2292 1.7836 17 6 0.0424 -5.5419 0.5419 18 6 0.4227 -4.7802 -0.5783 19 6 -0.0898 -5.0917 -1.8587 20 1 0.4849 -4.8564 -2.7424 21 6 -1.3416 -5.7053 -1.9812 22 7 -2.1355 -5.7843 -0.9443 23 14 -1.8790 -6.4113 -3.6249 24 1 -0.9208 -7.4637 -4.0487 25 1 -3.2353 -7.0011 -3.4907 26 1 -1.9085 -5.3300 -4.6424 27 6 1.3165 -3.7055 -0.4148 28 1 -0.3633 0.5943 0.8384 29 1 -0.3633 0.4289 -0.9339 30 1 -0.3633 -1.0232 0.0954 31 1 1.8933 -0.5138 -0.8900 32 1 3.1279 1.4433 -0.0678 33 1 1.6224 1.9756 -0.8541 34 1 1.7331 1.9364 0.9220 35 1 0.7191 -0.8462 4.3176 36 1 0.2107 -1.6878 2.8339 37 1 1.7929 -2.0495 3.5647 38 1 3.7449 1.2451 4.7537 39 1 1.8261 -3.9368 2.9093 40 1 0.2569 -5.8128 2.6447 41 1 -0.6432 -6.3686 0.4278 42 1 -3.0033 -6.2093 -1.0292 43 1 1.6147 -3.1139 -1.2677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619471078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:33 Heat of formation + Delta-G solvation = -144.623642 kcal Electronic energy + Delta-G solvation = -29527.798255 eV Core-core repulsion = 25471.932664 eV Total energy + Delta-G solvation = -4055.865590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.37835 -37.73484 -37.53524 -36.76990 -35.91602 -35.17719 -33.83969 -33.01569 -30.09819 -29.82502 -29.25361 -27.11260 -25.55096 -24.98549 -22.04650 -21.86407 -21.02319 -20.76969 -18.51738 -18.35051 -17.87022 -17.13249 -16.22503 -15.93807 -15.83661 -15.42815 -15.17123 -14.69455 -14.48972 -14.07849 -13.71160 -13.48157 -13.42757 -13.21717 -13.02276 -12.57921 -12.53636 -12.18457 -12.04859 -11.98331 -11.80424 -11.60755 -11.44603 -11.39954 -11.34473 -11.28640 -11.26333 -11.10280 -10.99050 -10.88201 -10.62868 -10.57998 -10.34719 -9.77770 -9.62309 -9.39388 -9.02337 -8.04266 -7.68048 -6.89217 -4.56817 0.95548 2.17858 2.30167 2.61911 2.87254 2.98993 3.01812 3.06510 3.44528 3.82744 4.36673 4.45560 4.67021 4.72171 4.91796 5.08750 5.14009 5.21089 5.26772 5.37741 5.50485 5.62195 5.65730 5.79083 5.84499 5.88450 6.02109 6.11646 6.11803 6.28751 6.36084 6.45204 6.52076 6.60083 6.64487 6.75696 6.90401 7.04659 7.20068 7.35441 7.70583 7.80162 7.92848 7.93772 8.39130 8.66528 8.70552 10.05493 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.003977 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.560305 B = 7039.336803 C = 7475.979138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 C -0.160 4.160 4 N -0.980 5.980 5 C 0.174 3.826 6 H 0.127 0.873 7 C -0.190 4.190 8 C 0.464 3.536 9 O -0.492 6.492 10 O -0.517 6.517 11 S 2.690 3.310 12 O -0.968 6.968 13 O -0.961 6.961 14 C -0.637 4.637 15 C -0.142 4.142 16 C -0.123 4.123 17 C -0.111 4.111 18 C 0.093 3.907 19 C -0.461 4.461 20 H 0.081 0.919 21 C 0.074 3.926 22 N -0.802 5.802 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.121 4.121 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.408 0.592 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.283 0.717 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 11.501 6.091 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 C -0.219 4.219 4 N -0.815 5.815 5 C 0.065 3.935 6 H 0.144 0.856 7 C -0.248 4.248 8 C 0.303 3.697 9 O -0.378 6.378 10 O -0.329 6.329 11 S 2.788 3.212 12 O -0.958 6.958 13 O -0.951 6.951 14 C -0.728 4.728 15 C -0.163 4.163 16 C -0.142 4.142 17 C -0.131 4.131 18 C 0.089 3.911 19 C -0.491 4.491 20 H 0.099 0.901 21 C -0.143 4.143 22 N -0.428 5.428 23 Si 0.738 3.262 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.189 1.189 27 C -0.143 4.143 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.266 0.734 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.145 0.855 42 H 0.094 0.906 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.892 11.238 5.838 12.695 hybrid contribution -0.480 -0.470 -0.487 0.830 sum 0.412 10.768 5.351 12.031 Atomic orbital electron populations 1.22240 0.94326 1.03798 1.02115 1.20975 0.94931 0.93868 0.86706 1.22160 1.02111 0.95555 1.02026 1.57812 1.71910 1.42460 1.09288 1.20021 0.91196 0.99811 0.82478 0.85573 1.22592 1.03065 0.98580 1.00520 1.23994 0.92373 0.74450 0.78921 1.90723 1.31335 1.51784 1.63950 1.84484 1.41862 1.69526 1.36982 1.01878 0.73543 0.72593 0.73234 1.93501 1.69555 1.86243 1.46523 1.93486 1.72998 1.85419 1.43242 1.29906 1.21711 1.20086 1.01140 1.20129 1.01540 0.99114 0.95541 1.20833 0.98353 0.97880 0.97178 1.21704 1.00096 0.99457 0.91852 1.17669 0.90220 0.89415 0.93778 1.19574 1.01731 1.34478 0.93345 0.90086 1.25896 0.96108 0.93626 0.98665 1.69735 1.08437 1.33315 1.31323 0.86273 0.78145 0.80071 0.81742 1.18771 1.20277 1.18871 1.20775 1.01369 0.98776 0.93352 0.92435 0.91365 0.90732 0.87736 0.91941 0.91174 0.92693 0.89628 0.89107 0.89399 0.73360 0.87444 0.88355 0.85522 0.90639 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.14 37.16 0.34 -1.66 16 2 C 0.14 1.93 3.17 -67.93 -0.22 1.72 16 3 C -0.16 -1.82 9.22 37.16 0.34 -1.47 16 4 N -0.98 -15.43 2.31 -101.51 -0.23 -15.66 16 5 C 0.17 2.29 2.25 -69.09 -0.16 2.13 16 6 H 0.13 1.23 6.14 -51.93 -0.32 0.91 16 7 C -0.19 -2.44 8.34 37.16 0.31 -2.13 16 8 C 0.46 6.60 6.96 36.00 0.25 6.85 16 9 O -0.49 -8.92 14.70 -26.30 -0.39 -9.31 16 10 O -0.52 -5.36 13.42 -39.26 -0.53 -5.89 16 11 S 2.69 54.43 4.43 -107.50 -0.48 53.95 16 12 O -0.97 -22.02 16.19 -57.17 -0.93 -22.94 16 13 O -0.96 -20.59 12.12 -66.50 -0.81 -21.40 16 14 C -0.64 -13.83 5.96 -39.66 -0.24 -14.07 16 15 C -0.14 -3.00 8.78 -39.29 -0.34 -3.35 16 16 C -0.12 -2.68 10.02 -39.66 -0.40 -3.07 16 17 C -0.11 -2.70 8.67 -38.87 -0.34 -3.03 16 18 C 0.09 2.33 5.56 -106.83 -0.59 1.73 16 19 C -0.46 -11.56 9.07 -37.74 -0.34 -11.90 16 20 H 0.08 1.96 7.87 -52.48 -0.41 1.55 16 21 C 0.07 1.75 5.24 -17.34 -0.09 1.66 16 22 N -0.80 -19.32 10.83 55.55 0.60 -18.72 16 23 Si 0.91 17.80 29.57 -169.99 -5.03 12.77 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 27 C -0.12 -2.85 9.26 -38.87 -0.36 -3.21 16 28 H 0.06 0.57 7.19 -51.93 -0.37 0.19 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.10 1.58 7.07 -51.93 -0.37 1.22 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.54 6.97 -51.93 -0.36 0.18 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.33 4.55 -51.93 -0.24 1.10 16 38 H 0.41 2.61 9.10 45.56 0.41 3.03 16 39 H 0.11 2.06 6.14 -52.49 -0.32 1.74 16 40 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.13 3.14 6.19 -52.48 -0.32 2.81 16 42 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 43 H 0.11 2.43 7.74 -52.49 -0.41 2.02 16 LS Contribution 360.69 15.07 5.44 5.44 Total: -1.00 -32.07 360.69 -8.98 -41.05 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.80 Total: 10.51 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -1.83 Total: -29.81 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.37 Total: -34.38 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -2.65 Total: -59.54 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 54.43 SS G_CDS: -0.48 Total: 53.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.07 -8.98 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.576 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds