Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47133 * 2 1 4 4 C 1.46501 * 119.99754 * 274.99497 * 3 2 1 5 5 C 1.53004 * 109.47418 * 275.00393 * 4 3 2 6 6 H 1.09001 * 109.47040 * 54.99728 * 5 4 3 7 7 C 1.53001 * 109.46838 * 295.00117 * 5 4 3 8 8 C 1.50695 * 109.47107 * 174.99893 * 5 4 3 9 9 O 1.20826 * 120.00283 * 0.02562 * 8 5 4 10 10 O 1.34231 * 120.00074 * 179.97438 * 8 5 4 11 11 S 1.65595 * 120.00460 * 95.00185 * 3 2 1 12 12 O 1.42098 * 106.40690 * 156.45585 * 11 3 2 13 13 O 1.42106 * 106.40207 * 23.53540 * 11 3 2 14 14 C 1.76204 * 107.21676 * 269.99657 * 11 3 2 15 15 C 1.38656 * 119.87373 * 269.72126 * 14 11 3 16 16 C 1.38613 * 120.49721 * 179.71819 * 15 14 11 17 17 C 1.37644 * 120.24834 * 0.55743 * 16 15 14 18 18 C 1.40694 * 119.74310 * 359.72718 * 17 16 15 19 19 C 1.41400 * 120.24289 * 180.02562 * 18 17 16 20 20 H 1.07990 * 120.00099 * 204.36865 * 19 18 17 21 21 C 1.39953 * 119.99945 * 24.36316 * 19 18 17 22 22 N 1.30827 * 119.99809 * 17.86226 * 21 19 18 23 23 Si 1.86803 * 119.99871 * 197.86628 * 21 19 18 24 24 H 1.48490 * 109.47236 * 59.99751 * 23 21 19 25 25 H 1.48497 * 109.46792 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46579 * 299.99980 * 23 21 19 27 27 C 1.37598 * 119.87412 * 89.99843 * 14 11 3 28 28 H 1.08993 * 109.47631 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47030 * 300.00615 * 1 2 3 30 30 H 1.09004 * 109.46944 * 60.00098 * 1 2 3 31 31 H 1.08999 * 109.46721 * 239.99544 * 2 1 3 32 32 H 1.08996 * 109.46328 * 119.99992 * 2 1 3 33 33 H 1.09003 * 109.47522 * 35.00398 * 4 3 2 34 34 H 1.09003 * 109.47121 * 155.00066 * 4 3 2 35 35 H 1.08998 * 109.47280 * 59.99760 * 7 5 4 36 36 H 1.09004 * 109.46952 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.46988 * 299.99643 * 7 5 4 38 38 H 0.96696 * 117.00201 * 180.02562 * 10 8 5 39 39 H 1.08000 * 119.74965 * 0.02562 * 15 14 11 40 40 H 1.08000 * 119.87824 * 180.26054 * 16 15 14 41 41 H 1.08006 * 120.12522 * 179.69501 * 17 16 15 42 42 H 0.96999 * 119.99734 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.12779 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1584 2.1085 -1.2640 5 6 3.5153 1.7837 -1.8918 6 1 3.6172 0.7037 -1.9983 7 6 4.6335 2.3152 -0.9929 8 6 3.6096 2.4333 -3.2483 9 8 2.6864 3.0892 -3.6695 10 8 4.7195 2.2841 -3.9882 11 16 2.4123 2.1202 1.4286 12 8 3.3285 3.1570 1.1048 13 8 2.7096 1.0799 2.3499 14 6 0.9556 2.9119 2.0252 15 6 0.6853 4.2233 1.6648 16 6 -0.4597 4.8567 2.1219 17 6 -1.3362 4.1923 2.9495 18 6 -1.0691 2.8634 3.3265 19 6 -1.9626 2.1708 4.1758 20 1 -1.6079 1.3447 4.7742 21 6 -3.3065 2.5558 4.2411 22 7 -3.8211 3.2974 3.2941 23 14 -4.3654 2.0109 5.6803 24 1 -3.7830 2.5250 6.9458 25 1 -5.7403 2.5466 5.5139 26 1 -4.4146 0.5274 5.7248 27 6 0.0935 2.2284 2.8516 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.3619 1.8096 -1.9454 34 1 2.0923 3.1801 -1.0757 35 1 4.5653 1.8454 -0.0117 36 1 5.6002 2.0834 -1.4400 37 1 4.5316 3.3953 -0.8864 38 1 4.7336 2.7198 -4.8514 39 1 1.3696 4.7535 1.0190 40 1 -0.6625 5.8770 1.8315 41 1 -2.2253 4.6895 3.3085 42 1 -4.7527 3.5640 3.3391 43 1 0.3081 1.2084 3.1344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619471202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -153.764202 kcal Electronic energy + Delta-G solvation = -28619.276295 eV Core-core repulsion = 24563.014340 eV Total energy + Delta-G solvation = -4056.261955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54093 -37.65851 -37.40767 -36.82481 -36.21064 -35.37194 -33.87220 -33.48926 -30.12384 -29.83599 -29.77742 -26.40283 -25.49267 -24.46978 -22.63909 -21.78591 -21.01180 -20.42569 -18.64532 -18.30405 -17.86051 -17.37706 -16.72992 -15.99282 -15.95396 -15.67327 -15.24560 -14.78672 -14.43182 -14.14745 -13.87114 -13.65757 -13.49206 -13.33309 -13.16184 -12.61764 -12.59025 -12.30141 -12.01214 -11.88902 -11.74444 -11.66570 -11.58546 -11.52755 -11.41502 -11.37911 -11.24377 -11.00348 -10.90870 -10.85364 -10.70157 -10.58173 -10.50979 -9.79161 -9.62601 -9.35439 -8.93696 -8.03102 -7.71323 -6.93816 -4.54832 0.91726 2.05840 2.17819 2.63105 2.81356 2.98666 3.00627 3.07757 3.45497 3.81606 4.20254 4.39998 4.54022 4.68286 4.78648 4.97694 5.05069 5.26390 5.35757 5.43072 5.44748 5.61254 5.73669 5.75564 5.82791 5.92144 6.00758 6.05413 6.16789 6.28795 6.32508 6.34822 6.56517 6.62437 6.68168 6.75931 6.91283 7.03421 7.20858 7.37075 7.72190 7.72464 7.79453 7.93184 8.38964 8.65817 8.70637 10.01461 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.003254 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.211482 B = 8603.330915 C = 8671.852059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.113 3.887 3 N -0.996 5.996 4 C 0.142 3.858 5 C -0.104 4.104 6 H 0.112 0.888 7 C -0.140 4.140 8 C 0.489 3.511 9 O -0.513 6.513 10 O -0.516 6.516 11 S 2.681 3.319 12 O -0.967 6.967 13 O -0.969 6.969 14 C -0.631 4.631 15 C -0.147 4.147 16 C -0.120 4.120 17 C -0.118 4.118 18 C 0.093 3.907 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.076 3.924 22 N -0.793 5.793 23 Si 0.911 3.089 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.126 4.126 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.408 0.592 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.259 -4.166 -10.317 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.012 4.012 3 N -0.832 5.832 4 C 0.015 3.985 5 C -0.125 4.125 6 H 0.130 0.870 7 C -0.197 4.197 8 C 0.331 3.669 9 O -0.400 6.400 10 O -0.328 6.328 11 S 2.779 3.221 12 O -0.957 6.957 13 O -0.960 6.960 14 C -0.723 4.723 15 C -0.168 4.168 16 C -0.140 4.140 17 C -0.138 4.138 18 C 0.090 3.910 19 C -0.491 4.491 20 H 0.100 0.900 21 C -0.142 4.142 22 N -0.418 5.418 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.188 1.188 27 C -0.147 4.147 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.267 0.733 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.095 0.905 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.607 -4.130 -9.753 14.299 hybrid contribution -1.486 0.325 -0.104 1.524 sum 8.121 -3.806 -9.856 13.326 Atomic orbital electron populations 1.22302 0.95473 1.02349 1.03870 1.21369 0.94933 0.81229 1.03698 1.57614 1.81913 1.22722 1.20907 1.21027 0.94300 0.97584 0.85557 1.21529 0.99877 1.02215 0.88902 0.86977 1.21914 0.96009 1.03490 0.98331 1.23370 0.79008 0.77701 0.86815 1.90744 1.38883 1.38251 1.72165 1.84539 1.42030 1.71971 1.34217 1.01991 0.74867 0.73260 0.72008 1.93546 1.60787 1.57851 1.83520 1.93518 1.84134 1.57227 1.61082 1.29751 1.21273 1.06426 1.14833 1.20071 0.98694 0.93481 1.04544 1.20814 0.95058 0.98494 0.99613 1.21647 0.99097 0.94346 0.98673 1.17660 0.91088 0.91545 0.90756 1.19585 0.92885 1.14960 1.21631 0.89953 1.25930 0.98736 0.93500 0.96076 1.69774 1.15072 1.28015 1.28974 0.86307 0.78316 0.80070 0.81784 1.18678 1.20255 1.18810 1.20729 0.96588 0.98140 0.99263 0.91682 0.90820 0.92280 0.90592 0.88858 0.89211 0.88771 0.91710 0.91703 0.90100 0.73316 0.87652 0.88400 0.85760 0.90515 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.11 1.41 6.40 -4.04 -0.03 1.39 16 3 N -1.00 -14.41 2.51 -114.38 -0.29 -14.70 16 4 C 0.14 1.86 4.32 -4.04 -0.02 1.84 16 5 C -0.10 -1.17 3.03 -91.77 -0.28 -1.44 16 6 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 7 C -0.14 -1.71 7.55 37.16 0.28 -1.43 16 8 C 0.49 5.49 7.63 36.00 0.27 5.76 16 9 O -0.51 -7.23 16.68 -18.75 -0.31 -7.54 16 10 O -0.52 -4.32 13.33 -39.26 -0.52 -4.84 16 11 S 2.68 49.02 4.86 -107.50 -0.52 48.50 16 12 O -0.97 -18.08 12.67 -57.17 -0.72 -18.80 16 13 O -0.97 -19.60 15.82 -57.17 -0.90 -20.51 16 14 C -0.63 -13.59 5.97 -39.66 -0.24 -13.82 16 15 C -0.15 -3.17 9.53 -39.29 -0.37 -3.54 16 16 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 17 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 18 C 0.09 2.37 5.58 -106.83 -0.60 1.77 16 19 C -0.46 -11.65 9.06 -37.74 -0.34 -12.00 16 20 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 21 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 22 N -0.79 -19.39 10.95 55.55 0.61 -18.78 16 23 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 27 C -0.13 -2.96 8.16 -38.87 -0.32 -3.27 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.24 7.00 -51.93 -0.36 0.87 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 32 H 0.09 1.21 6.91 -51.93 -0.36 0.85 16 33 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 34 H 0.09 1.35 7.61 -51.93 -0.40 0.95 16 35 H 0.06 0.87 5.77 -51.93 -0.30 0.57 16 36 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.08 1.09 7.45 -51.93 -0.39 0.70 16 38 H 0.41 1.68 9.10 45.56 0.41 2.10 16 39 H 0.11 2.05 7.59 -52.49 -0.40 1.66 16 40 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.12 3.13 6.16 -52.48 -0.32 2.81 16 42 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 43 H 0.11 2.48 7.60 -52.49 -0.40 2.08 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -30.73 366.95 -9.24 -39.97 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.00 Total: 9.79 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: -2.08 Total: -31.46 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.32 Total: -33.48 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -2.46 Total: -51.69 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 49.02 SS G_CDS: -0.52 Total: 48.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.73 -9.24 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.792 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds