Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47133 * 2 1 4 4 C 1.46501 * 119.99754 * 274.99497 * 3 2 1 5 5 C 1.53004 * 109.47418 * 275.00393 * 4 3 2 6 6 H 1.09001 * 109.47040 * 54.99728 * 5 4 3 7 7 C 1.53001 * 109.46838 * 295.00117 * 5 4 3 8 8 C 1.50695 * 109.47107 * 174.99893 * 5 4 3 9 9 O 1.20826 * 120.00283 * 0.02562 * 8 5 4 10 10 O 1.34231 * 120.00074 * 179.97438 * 8 5 4 11 11 S 1.65595 * 120.00460 * 95.00185 * 3 2 1 12 12 O 1.42098 * 106.40690 * 156.45585 * 11 3 2 13 13 O 1.42106 * 106.40207 * 23.53540 * 11 3 2 14 14 C 1.76204 * 107.21676 * 269.99657 * 11 3 2 15 15 C 1.38656 * 119.87373 * 269.72126 * 14 11 3 16 16 C 1.38613 * 120.49721 * 179.71819 * 15 14 11 17 17 C 1.37644 * 120.24834 * 0.55743 * 16 15 14 18 18 C 1.40694 * 119.74310 * 359.72718 * 17 16 15 19 19 C 1.41400 * 120.24289 * 180.02562 * 18 17 16 20 20 H 1.07990 * 120.00099 * 204.36865 * 19 18 17 21 21 C 1.39953 * 119.99945 * 24.36316 * 19 18 17 22 22 N 1.30827 * 119.99809 * 17.86226 * 21 19 18 23 23 Si 1.86803 * 119.99871 * 197.86628 * 21 19 18 24 24 H 1.48490 * 109.47236 * 59.99751 * 23 21 19 25 25 H 1.48497 * 109.46792 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46579 * 299.99980 * 23 21 19 27 27 C 1.37598 * 119.87412 * 89.99843 * 14 11 3 28 28 H 1.08993 * 109.47631 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47030 * 300.00615 * 1 2 3 30 30 H 1.09004 * 109.46944 * 60.00098 * 1 2 3 31 31 H 1.08999 * 109.46721 * 239.99544 * 2 1 3 32 32 H 1.08996 * 109.46328 * 119.99992 * 2 1 3 33 33 H 1.09003 * 109.47522 * 35.00398 * 4 3 2 34 34 H 1.09003 * 109.47121 * 155.00066 * 4 3 2 35 35 H 1.08998 * 109.47280 * 59.99760 * 7 5 4 36 36 H 1.09004 * 109.46952 * 179.97438 * 7 5 4 37 37 H 1.09001 * 109.46988 * 299.99643 * 7 5 4 38 38 H 0.96696 * 117.00201 * 180.02562 * 10 8 5 39 39 H 1.08000 * 119.74965 * 0.02562 * 15 14 11 40 40 H 1.08000 * 119.87824 * 180.26054 * 16 15 14 41 41 H 1.08006 * 120.12522 * 179.69501 * 17 16 15 42 42 H 0.96999 * 119.99734 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.12779 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1584 2.1085 -1.2640 5 6 3.5153 1.7837 -1.8918 6 1 3.6172 0.7037 -1.9983 7 6 4.6335 2.3152 -0.9929 8 6 3.6096 2.4333 -3.2483 9 8 2.6864 3.0892 -3.6695 10 8 4.7195 2.2841 -3.9882 11 16 2.4123 2.1202 1.4286 12 8 3.3285 3.1570 1.1048 13 8 2.7096 1.0799 2.3499 14 6 0.9556 2.9119 2.0252 15 6 0.6853 4.2233 1.6648 16 6 -0.4597 4.8567 2.1219 17 6 -1.3362 4.1923 2.9495 18 6 -1.0691 2.8634 3.3265 19 6 -1.9626 2.1708 4.1758 20 1 -1.6079 1.3447 4.7742 21 6 -3.3065 2.5558 4.2411 22 7 -3.8211 3.2974 3.2941 23 14 -4.3654 2.0109 5.6803 24 1 -3.7830 2.5250 6.9458 25 1 -5.7403 2.5466 5.5139 26 1 -4.4146 0.5274 5.7248 27 6 0.0935 2.2284 2.8516 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 1.3619 1.8096 -1.9454 34 1 2.0923 3.1801 -1.0757 35 1 4.5653 1.8454 -0.0117 36 1 5.6002 2.0834 -1.4400 37 1 4.5316 3.3953 -0.8864 38 1 4.7336 2.7198 -4.8514 39 1 1.3696 4.7535 1.0190 40 1 -0.6625 5.8770 1.8315 41 1 -2.2253 4.6895 3.3085 42 1 -4.7527 3.5640 3.3391 43 1 0.3081 1.2084 3.1344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619471202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -173.483698 kcal Electronic energy + Delta-G solvation = -28620.131396 eV Core-core repulsion = 24563.014340 eV Total energy + Delta-G solvation = -4057.117056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39966 -39.45108 -38.50898 -38.27877 -37.04111 -36.89847 -35.67477 -34.49590 -31.92791 -31.58733 -30.91844 -27.44607 -27.32146 -25.40207 -23.89727 -23.35151 -22.81006 -21.39042 -20.13193 -19.50074 -19.07415 -18.54745 -17.94762 -17.58582 -17.17071 -16.84047 -16.67773 -16.51803 -15.74707 -15.30018 -15.17392 -15.10160 -14.76422 -14.65862 -14.31087 -14.18750 -13.75203 -13.68880 -13.45901 -13.30032 -13.10259 -13.07666 -13.02930 -12.88529 -12.74481 -12.66319 -12.58436 -12.47544 -12.27313 -12.19006 -11.98244 -11.74237 -11.55791 -11.44108 -11.29613 -11.13848 -10.16835 -9.80763 -9.56007 -8.73211 -6.45133 -0.54186 0.41188 0.84547 1.21433 1.36877 1.46051 1.49651 1.87760 2.16974 2.24362 2.55972 2.76725 3.38646 3.50694 3.60426 3.68807 4.01487 4.15058 4.28114 4.34232 4.38544 4.41885 4.49836 4.61899 4.72486 4.78476 4.82854 4.86143 4.89631 4.93031 5.02148 5.06746 5.19663 5.25156 5.37018 5.40578 5.45983 5.55682 5.61904 5.66756 5.88682 5.93567 6.09663 6.52239 6.79685 6.84636 7.02393 8.24330 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.003254 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.211482 B = 8603.330915 C = 8671.852059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.108 3.892 3 N -0.985 5.985 4 C 0.135 3.865 5 C -0.101 4.101 6 H 0.144 0.856 7 C -0.142 4.142 8 C 0.499 3.501 9 O -0.547 6.547 10 O -0.507 6.507 11 S 2.705 3.295 12 O -0.969 6.969 13 O -0.988 6.988 14 C -0.641 4.641 15 C -0.150 4.150 16 C -0.124 4.124 17 C -0.143 4.143 18 C 0.065 3.935 19 C -0.498 4.498 20 H 0.079 0.921 21 C 0.039 3.961 22 N -0.821 5.821 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.266 1.266 26 H -0.258 1.258 27 C -0.139 4.139 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.429 0.571 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.292 0.708 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -5.272 -11.883 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.016 4.016 3 N -0.823 5.823 4 C 0.009 3.991 5 C -0.121 4.121 6 H 0.161 0.839 7 C -0.200 4.200 8 C 0.342 3.658 9 O -0.438 6.438 10 O -0.320 6.320 11 S 2.799 3.201 12 O -0.959 6.959 13 O -0.978 6.978 14 C -0.729 4.729 15 C -0.171 4.171 16 C -0.143 4.143 17 C -0.163 4.163 18 C 0.062 3.938 19 C -0.527 4.527 20 H 0.098 0.902 21 C -0.177 4.177 22 N -0.446 5.446 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.190 1.190 26 H -0.182 1.182 27 C -0.160 4.160 28 H 0.105 0.895 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.290 0.710 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.640 -5.208 -11.323 16.387 hybrid contribution -1.664 0.662 0.211 1.803 sum 8.976 -4.545 -11.112 14.990 Atomic orbital electron populations 1.22305 0.96461 1.03250 1.02032 1.21637 0.94095 0.80135 1.05738 1.57338 1.81701 1.23295 1.19975 1.21178 0.96330 0.96694 0.84876 1.21462 0.97924 1.04092 0.88651 0.83854 1.21897 0.97691 1.02248 0.98117 1.23219 0.78999 0.76803 0.86782 1.90746 1.40249 1.39763 1.73000 1.84481 1.40385 1.71790 1.35349 1.01352 0.73565 0.72751 0.72447 1.93544 1.60216 1.58438 1.83714 1.93490 1.84008 1.57568 1.62746 1.30384 1.22111 1.06715 1.13695 1.20422 0.98693 0.93688 1.04311 1.21128 0.94837 0.99644 0.98716 1.21635 0.99658 0.94574 1.00439 1.18015 0.92133 0.92222 0.91465 1.19831 0.94141 1.15872 1.22834 0.90247 1.26731 0.99378 0.93270 0.98299 1.69817 1.15797 1.28665 1.30339 0.85254 0.76776 0.79797 0.77989 1.18627 1.18999 1.18198 1.20783 0.96863 0.98333 1.00061 0.89518 0.94777 0.91898 0.85962 0.89289 0.87890 0.90313 0.93062 0.89421 0.91870 0.70954 0.85388 0.85875 0.86978 0.89763 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.75 10.24 71.98 0.74 -4.01 16 2 C 0.11 2.46 6.40 86.38 0.55 3.01 16 3 N -0.99 -26.90 2.51 -515.78 -1.29 -28.19 16 4 C 0.13 3.27 4.32 86.38 0.37 3.64 16 5 C -0.10 -1.94 3.03 -11.54 -0.03 -1.98 16 6 H 0.14 1.89 8.08 -2.39 -0.02 1.87 16 7 C -0.14 -3.12 7.55 71.98 0.54 -2.58 16 8 C 0.50 9.77 7.63 71.23 0.54 10.32 16 9 O -0.55 -14.36 16.68 21.96 0.37 -14.00 16 10 O -0.51 -6.70 13.33 -51.42 -0.69 -7.39 16 11 S 2.71 97.57 4.86 -56.49 -0.27 97.30 16 12 O -0.97 -35.40 12.67 -128.00 -1.62 -37.02 16 13 O -0.99 -39.74 15.82 -128.00 -2.02 -41.76 16 14 C -0.64 -28.06 5.97 22.22 0.13 -27.92 16 15 C -0.15 -6.53 9.53 22.46 0.21 -6.31 16 16 C -0.12 -5.66 10.02 22.22 0.22 -5.44 16 17 C -0.14 -7.38 8.70 22.73 0.20 -7.18 16 18 C 0.06 3.45 5.58 -21.29 -0.12 3.34 16 19 C -0.50 -26.29 9.06 23.46 0.21 -26.08 16 20 H 0.08 4.06 7.91 -2.92 -0.02 4.03 16 21 C 0.04 1.90 5.14 85.26 0.44 2.34 16 22 N -0.82 -41.27 10.95 21.83 0.24 -41.03 16 23 Si 0.98 37.06 29.60 68.60 2.03 39.09 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 25 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16 26 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 27 C -0.14 -6.82 8.16 22.73 0.19 -6.64 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.03 1.16 7.00 -2.38 -0.02 1.14 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.12 1.73 8.05 -2.39 -0.02 1.72 16 32 H 0.09 2.16 6.91 -2.39 -0.02 2.14 16 33 H 0.10 2.25 7.92 -2.39 -0.02 2.23 16 34 H 0.08 2.17 7.61 -2.39 -0.02 2.15 16 35 H 0.05 1.27 5.77 -2.39 -0.01 1.25 16 36 H 0.09 1.50 8.11 -2.39 -0.02 1.48 16 37 H 0.06 1.61 7.45 -2.39 -0.02 1.59 16 38 H 0.43 2.09 9.10 -74.06 -0.67 1.42 16 39 H 0.13 4.89 7.59 -2.91 -0.02 4.86 16 40 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 41 H 0.11 5.93 6.16 -2.91 -0.02 5.91 16 42 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 43 H 0.11 5.19 7.60 -2.91 -0.02 5.17 16 Total: -1.00 -68.72 366.95 1.31 -67.41 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.37 Total: 31.09 kcal Atomic # 6 Polarization: -69.70 SS G_CDS: 4.20 Total: -65.50 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.05 Total: -69.23 kcal Atomic # 8 Polarization: -96.20 SS G_CDS: -3.97 Total: -100.17 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.09 kcal Atomic # 16 Polarization: 97.57 SS G_CDS: -0.27 Total: 97.30 kcal Total: -68.72 1.31 -67.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.072 kcal (2) G-P(sol) polarization free energy of solvation -68.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds