Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46510 * 109.47180 * 2 1 4 4 C 1.46494 * 119.99867 * 275.32152 * 3 2 1 5 5 H 1.09004 * 109.47607 * 5.74812 * 4 3 2 6 6 C 1.53003 * 109.47259 * 125.74855 * 4 3 2 7 7 C 1.53001 * 109.47261 * 245.75040 * 4 3 2 8 8 C 1.50701 * 109.47401 * 65.08357 * 7 4 3 9 9 O 1.20828 * 119.99550 * 5.54746 * 8 7 4 10 10 O 1.34228 * 120.00181 * 185.55218 * 8 7 4 11 11 S 1.65592 * 119.99808 * 95.31890 * 3 2 1 12 12 O 1.42101 * 106.40139 * 163.84847 * 11 3 2 13 13 O 1.42102 * 106.40566 * 30.92404 * 11 3 2 14 14 C 1.76205 * 107.21975 * 277.38500 * 11 3 2 15 15 C 1.38649 * 119.87420 * 267.87966 * 14 11 3 16 16 C 1.38619 * 120.49807 * 180.02562 * 15 14 11 17 17 C 1.37638 * 120.24921 * 0.02562 * 16 15 14 18 18 C 1.40692 * 119.74287 * 359.97438 * 17 16 15 19 19 C 1.41402 * 120.24040 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99760 * 209.14510 * 19 18 17 21 21 C 1.39936 * 120.00263 * 29.14643 * 19 18 17 22 22 N 1.30829 * 120.00171 * 11.79150 * 21 19 18 23 23 Si 1.86797 * 120.00264 * 191.79070 * 21 19 18 24 24 H 1.48498 * 109.47075 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47100 * 119.99893 * 23 21 19 26 26 H 1.48504 * 109.47362 * 240.00188 * 23 21 19 27 27 C 1.37599 * 119.87116 * 87.90034 * 14 11 3 28 28 H 1.09003 * 109.47113 * 64.97106 * 1 2 3 29 29 H 1.09002 * 109.47201 * 184.96847 * 1 2 3 30 30 H 1.09000 * 109.47067 * 304.96927 * 1 2 3 31 31 H 1.09000 * 109.47566 * 240.00060 * 2 1 3 32 32 H 1.08999 * 109.47550 * 120.00113 * 2 1 3 33 33 H 1.09001 * 109.46800 * 307.00474 * 6 4 3 34 34 H 1.09002 * 109.46707 * 67.00477 * 6 4 3 35 35 H 1.08993 * 109.46907 * 187.00481 * 6 4 3 36 36 H 1.08993 * 109.47601 * 185.09167 * 7 4 3 37 37 H 1.09010 * 109.46614 * 305.08599 * 7 4 3 38 38 H 0.96698 * 117.00068 * 180.02562 * 10 8 7 39 39 H 1.08002 * 119.75610 * 359.97438 * 15 14 11 40 40 H 1.08002 * 119.87513 * 179.97438 * 16 15 14 41 41 H 1.08003 * 120.12572 * 180.02562 * 17 16 15 42 42 H 0.96992 * 120.00284 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.13392 * 0.25732 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1516 2.1111 -1.2632 5 1 1.7481 1.5072 -2.0761 6 6 1.3791 3.4288 -1.1749 7 6 3.6295 2.4032 -1.5301 8 6 4.3678 1.1065 -1.7411 9 8 3.7581 0.0642 -1.7838 10 8 5.7028 1.1094 -1.8815 11 16 2.4197 2.1176 1.4279 12 8 3.1937 3.2594 1.0869 13 8 2.8881 1.0906 2.2912 14 6 0.9262 2.7235 2.1402 15 6 0.5108 4.0194 1.8751 16 6 -0.6616 4.5096 2.4289 17 6 -1.4266 3.7127 3.2500 18 6 -1.0148 2.3960 3.5259 19 6 -1.7929 1.5681 4.3676 20 1 -1.3180 0.7946 4.9530 21 6 -3.1783 1.7508 4.4422 22 7 -3.7843 2.5201 3.5746 23 14 -4.1625 0.8965 5.7804 24 1 -3.2486 0.0896 6.6283 25 1 -4.8455 1.9142 6.6188 26 1 -5.1757 0.0068 5.1582 27 6 0.1770 1.9088 2.9576 28 1 -0.3633 0.4348 -0.9312 29 1 -0.3634 -1.0238 0.0890 30 1 -0.3633 0.5890 0.8421 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.3541 3.2288 -0.8627 34 1 1.8594 4.0834 -0.4476 35 1 1.3736 3.9128 -2.1515 36 1 3.7222 3.0233 -2.4216 37 1 4.0559 2.9292 -0.6757 38 1 6.1320 0.2532 -2.0151 39 1 1.1055 4.6522 1.2329 40 1 -0.9755 5.5208 2.2160 41 1 -2.3400 4.0965 3.6802 42 1 -4.7444 2.6471 3.6265 43 1 0.5047 0.9012 3.1664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619471292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -149.979941 kcal Electronic energy + Delta-G solvation = -29274.263566 eV Core-core repulsion = 25218.165709 eV Total energy + Delta-G solvation = -4056.097857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36247 -37.74821 -37.51881 -36.79679 -35.94443 -35.34738 -33.81912 -32.92637 -30.09725 -29.86490 -28.96120 -28.22226 -25.47941 -22.97018 -22.48650 -21.78512 -21.08893 -21.01391 -18.54723 -18.12413 -17.71076 -16.99685 -16.64266 -15.99756 -15.95790 -15.62489 -15.17662 -14.78514 -14.51222 -13.93460 -13.76349 -13.48393 -13.40637 -13.35568 -12.91127 -12.59262 -12.44432 -12.30463 -12.01714 -11.83578 -11.80194 -11.59458 -11.55401 -11.44718 -11.37782 -11.35731 -11.24661 -10.99139 -10.91966 -10.73881 -10.56931 -10.43211 -10.20559 -9.74024 -9.61065 -9.39419 -8.81417 -8.01902 -7.65390 -6.87974 -4.55206 0.97618 2.16060 2.20695 2.61593 3.00285 3.01380 3.04048 3.07162 3.41540 3.84736 4.17728 4.42261 4.68641 4.81137 4.89725 5.08084 5.29150 5.38597 5.40395 5.47810 5.64104 5.67752 5.73812 5.79972 5.98881 6.04004 6.10426 6.14987 6.24467 6.40925 6.47445 6.58321 6.63676 6.70570 6.75002 6.80313 6.97551 7.06394 7.20892 7.36045 7.70201 7.81978 7.86888 7.93626 8.40670 8.67741 8.72215 10.07729 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003661 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.709615 B = 7646.237872 C = 8014.464461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.115 3.885 3 N -0.991 5.991 4 C 0.174 3.826 5 H 0.100 0.900 6 C -0.195 4.195 7 C -0.158 4.158 8 C 0.477 3.523 9 O -0.508 6.508 10 O -0.520 6.520 11 S 2.682 3.318 12 O -0.976 6.976 13 O -0.972 6.972 14 C -0.632 4.632 15 C -0.140 4.140 16 C -0.124 4.124 17 C -0.110 4.110 18 C 0.093 3.907 19 C -0.462 4.462 20 H 0.082 0.918 21 C 0.074 3.926 22 N -0.803 5.803 23 Si 0.912 3.088 24 H -0.260 1.260 25 H -0.272 1.272 26 H -0.274 1.274 27 C -0.119 4.119 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.407 0.593 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.281 0.719 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 -0.470 -10.841 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.010 4.010 3 N -0.827 5.827 4 C 0.067 3.933 5 H 0.118 0.882 6 C -0.253 4.253 7 C -0.197 4.197 8 C 0.319 3.681 9 O -0.396 6.396 10 O -0.332 6.332 11 S 2.779 3.221 12 O -0.967 6.967 13 O -0.962 6.962 14 C -0.724 4.724 15 C -0.161 4.161 16 C -0.144 4.144 17 C -0.129 4.129 18 C 0.089 3.911 19 C -0.492 4.492 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.429 5.429 23 Si 0.736 3.264 24 H -0.183 1.183 25 H -0.197 1.197 26 H -0.199 1.199 27 C -0.140 4.140 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.092 0.908 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.472 -0.284 -10.544 13.529 hybrid contribution -1.158 -0.789 0.446 1.471 sum 7.314 -1.073 -10.098 12.514 Atomic orbital electron populations 1.22341 0.95911 1.02388 1.03277 1.21445 0.94096 0.80987 1.04497 1.57561 1.82192 1.22619 1.20302 1.20517 0.91718 0.93720 0.87336 0.88227 1.22649 1.01965 0.96529 1.04171 1.22454 0.95933 0.93425 1.07844 1.23608 0.80267 0.92283 0.71899 1.90656 1.68330 1.34483 1.46106 1.84561 1.23041 1.41181 1.84411 1.01945 0.75068 0.72846 0.72203 1.93403 1.68801 1.51114 1.83340 1.93516 1.79827 1.58230 1.64635 1.29737 1.22054 1.04741 1.15860 1.20142 0.98031 0.93780 1.04150 1.20827 0.95442 0.98541 0.99548 1.21657 0.99553 0.93265 0.98463 1.17677 0.90780 0.91838 0.90770 1.19628 0.91626 1.15615 1.22377 0.90021 1.25883 0.98461 0.94396 0.95528 1.69749 1.11356 1.31265 1.30505 0.86192 0.79553 0.79708 0.80930 1.18311 1.19714 1.19890 1.20798 0.97354 0.97492 0.98396 0.92656 0.91948 0.90833 0.88778 0.89868 0.90201 0.89675 0.90800 0.86364 0.84388 0.73485 0.87348 0.88393 0.85776 0.90776 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 10.23 37.16 0.38 -2.36 16 2 C 0.11 1.74 5.79 -4.04 -0.02 1.72 16 3 N -0.99 -15.52 2.24 -107.30 -0.24 -15.76 16 4 C 0.17 2.21 2.28 -67.93 -0.15 2.06 16 5 H 0.10 1.13 7.64 -51.93 -0.40 0.74 16 6 C -0.20 -2.40 8.20 37.16 0.30 -2.09 16 7 C -0.16 -1.83 5.23 -27.88 -0.15 -1.98 16 8 C 0.48 5.86 8.15 36.01 0.29 6.15 16 9 O -0.51 -7.20 13.84 -18.75 -0.26 -7.46 16 10 O -0.52 -5.20 13.42 -39.25 -0.53 -5.72 16 11 S 2.68 51.04 4.98 -107.50 -0.54 50.50 16 12 O -0.98 -18.30 12.16 -57.17 -0.70 -18.99 16 13 O -0.97 -21.18 16.04 -57.17 -0.92 -22.10 16 14 C -0.63 -13.47 5.79 -39.66 -0.23 -13.70 16 15 C -0.14 -2.89 8.61 -39.29 -0.34 -3.23 16 16 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 17 C -0.11 -2.66 8.66 -38.87 -0.34 -3.00 16 18 C 0.09 2.34 5.54 -106.82 -0.59 1.75 16 19 C -0.46 -11.73 9.06 -37.74 -0.34 -12.07 16 20 H 0.08 2.02 7.87 -52.49 -0.41 1.60 16 21 C 0.07 1.77 5.23 -17.34 -0.09 1.68 16 22 N -0.80 -19.62 10.93 55.55 0.61 -19.02 16 23 Si 0.91 18.07 29.58 -169.99 -5.03 13.04 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.12 -2.80 7.82 -38.87 -0.30 -3.10 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 31 H 0.09 1.34 6.05 -51.93 -0.31 1.02 16 32 H 0.08 1.35 7.02 -51.93 -0.36 0.99 16 33 H 0.08 1.08 8.00 -51.93 -0.42 0.67 16 34 H 0.08 1.16 4.46 -51.93 -0.23 0.93 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.14 1.85 5.41 -51.92 -0.28 1.57 16 38 H 0.41 2.31 9.10 45.56 0.41 2.73 16 39 H 0.11 1.98 5.91 -52.49 -0.31 1.66 16 40 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.12 3.09 6.29 -52.48 -0.33 2.76 16 42 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 43 H 0.11 2.52 7.65 -52.49 -0.40 2.12 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -30.45 355.86 -8.83 -39.28 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -4.62 Total: 12.11 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -1.98 Total: -31.25 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.37 Total: -34.78 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -2.40 Total: -54.27 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 51.04 SS G_CDS: -0.54 Total: 50.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.45 -8.83 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.696 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds