Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00192 * 2 1 4 4 O 1.20823 * 120.00139 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99711 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47091 * 300.00093 * 5 3 2 7 7 C 1.52992 * 109.47053 * 60.00639 * 5 3 2 8 8 C 1.52997 * 109.46674 * 180.02562 * 5 3 2 9 9 N 1.46502 * 109.47123 * 175.00093 * 8 5 3 10 10 C 1.46498 * 119.99899 * 275.00423 * 9 8 5 11 11 S 1.65597 * 120.00033 * 94.99841 * 9 8 5 12 12 O 1.42100 * 106.40352 * 203.54181 * 11 9 8 13 13 O 1.42102 * 106.40326 * 336.46037 * 11 9 8 14 14 C 1.76201 * 107.21987 * 90.00317 * 11 9 8 15 15 C 1.38664 * 119.87373 * 269.73163 * 14 11 9 16 16 C 1.38607 * 120.49950 * 179.72041 * 15 14 11 17 17 C 1.37640 * 120.24702 * 0.55023 * 16 15 14 18 18 C 1.40697 * 119.74687 * 359.72216 * 17 16 15 19 19 C 1.41397 * 120.24907 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00230 * 150.20698 * 19 18 17 21 21 C 1.39948 * 119.99585 * 330.21248 * 19 18 17 22 22 N 1.30831 * 119.99593 * 161.73131 * 21 19 18 23 23 Si 1.86801 * 120.00172 * 341.73342 * 21 19 18 24 24 H 1.48500 * 109.46947 * 95.41159 * 23 21 19 25 25 H 1.48505 * 109.46917 * 215.41104 * 23 21 19 26 26 H 1.48498 * 109.47007 * 335.40989 * 23 21 19 27 27 C 1.37587 * 119.87530 * 89.99591 * 14 11 9 28 28 H 1.09002 * 109.47175 * 299.99666 * 1 2 3 29 29 H 1.09001 * 109.47289 * 59.99086 * 1 2 3 30 30 H 1.09000 * 109.47792 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47222 * 300.00000 * 7 5 3 32 32 H 1.09006 * 109.47464 * 59.99386 * 7 5 3 33 33 H 1.08998 * 109.47231 * 179.97438 * 7 5 3 34 34 H 1.09000 * 109.47283 * 295.00312 * 8 5 3 35 35 H 1.08999 * 109.47406 * 55.00182 * 8 5 3 36 36 H 1.08998 * 109.47389 * 89.99700 * 10 9 8 37 37 H 1.09006 * 109.46849 * 209.99939 * 10 9 8 38 38 H 1.09004 * 109.47207 * 329.99368 * 10 9 8 39 39 H 1.08001 * 119.74996 * 359.97438 * 15 14 11 40 40 H 1.08000 * 119.87676 * 180.25250 * 16 15 14 41 41 H 1.08005 * 120.13028 * 179.70517 * 17 16 15 42 42 H 0.97004 * 119.99664 * 180.02562 * 22 21 19 43 43 H 1.08003 * 120.13205 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7804 0.8891 7 6 4.1128 0.5815 -1.2502 8 6 4.0002 2.7419 0.0002 9 7 5.4582 2.8200 0.1200 10 6 6.0878 2.7789 1.4422 11 16 6.3946 2.9544 -1.2391 12 8 7.6814 2.4627 -0.8902 13 8 5.6251 2.4262 -2.3106 14 6 6.5918 4.6741 -1.5687 15 6 5.6830 5.3294 -2.3857 16 6 5.8224 6.6831 -2.6489 17 6 6.8733 7.3897 -2.1097 18 6 7.8047 6.7339 -1.2839 19 6 8.8881 7.4496 -0.7239 20 1 9.3021 7.1463 0.2264 21 6 9.4237 8.5510 -1.4011 22 7 10.1599 9.4199 -0.7572 23 14 9.0875 8.7804 -3.2242 24 1 7.9299 9.6932 -3.4030 25 1 10.2852 9.3658 -3.8786 26 1 8.7801 7.4646 -3.8403 27 6 7.6499 5.3604 -1.0188 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.8037 -0.4638 -1.2504 32 1 3.7227 1.0759 -2.1400 33 1 5.2013 0.6388 -1.2509 34 1 3.6863 3.2141 -0.9307 35 1 3.5384 3.2569 0.8425 36 1 6.3036 1.7446 1.7099 37 1 7.0160 3.3500 1.4205 38 1 5.4121 3.2118 2.1799 39 1 4.8580 4.7818 -2.8169 40 1 5.1064 7.1843 -3.2834 41 1 6.9828 8.4434 -2.3199 42 1 10.5309 10.1835 -1.2265 43 1 8.3588 4.8472 -0.3859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619476520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -137.714059 kcal Electronic energy + Delta-G solvation = -28156.688648 eV Core-core repulsion = 24101.122680 eV Total energy + Delta-G solvation = -4055.565968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.78386 -37.94980 -37.53055 -36.84724 -36.38727 -35.46344 -33.81045 -33.09504 -30.75537 -30.19812 -28.17555 -27.37650 -25.56793 -25.40248 -23.35158 -22.35171 -20.95017 -20.42688 -18.89783 -18.18863 -17.76458 -17.21278 -16.83082 -16.57713 -16.33820 -15.82600 -15.48818 -14.84754 -14.61890 -14.45237 -14.15182 -13.81125 -13.49294 -13.25684 -13.23434 -13.02111 -12.90068 -12.63879 -12.32939 -12.27902 -12.24832 -11.88537 -11.77474 -11.62916 -11.51432 -11.46341 -11.24256 -11.08747 -11.06198 -10.99672 -10.79794 -10.50379 -10.36191 -10.03489 -9.80367 -9.35545 -9.02462 -8.30339 -7.90918 -7.11134 -4.66820 0.76313 1.87297 2.00334 2.38799 2.45387 2.97775 3.09779 3.18648 3.29645 3.83574 4.05490 4.25136 4.41017 4.59019 4.64659 4.77460 4.83872 4.91024 4.98413 5.08025 5.14644 5.25893 5.46488 5.52913 5.66006 5.70359 5.77421 5.80260 5.85037 5.95864 6.02327 6.13662 6.17014 6.28539 6.41463 6.44681 6.66156 6.83950 7.05034 7.16100 7.36215 7.52285 7.58620 7.74543 8.15219 8.39395 8.58970 9.90655 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.003004 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.164987 B = 9317.381360 C = 9628.116035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.472 3.528 4 O -0.505 6.505 5 C -0.105 4.105 6 H 0.113 0.887 7 C -0.141 4.141 8 C 0.141 3.859 9 N -1.001 6.001 10 C 0.091 3.909 11 S 2.683 3.317 12 O -0.963 6.963 13 O -0.962 6.962 14 C -0.626 4.626 15 C -0.156 4.156 16 C -0.092 4.092 17 C -0.197 4.197 18 C 0.073 3.927 19 C -0.443 4.443 20 H 0.096 0.904 21 C 0.084 3.916 22 N -0.799 5.799 23 Si 0.906 3.094 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.243 1.243 27 C -0.106 4.106 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.288 0.712 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 -14.153 2.801 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.392 6.392 5 C -0.126 4.126 6 H 0.131 0.869 7 C -0.198 4.198 8 C 0.015 3.985 9 N -0.837 5.837 10 C -0.054 4.054 11 S 2.779 3.221 12 O -0.953 6.953 13 O -0.952 6.952 14 C -0.717 4.717 15 C -0.177 4.177 16 C -0.111 4.111 17 C -0.216 4.216 18 C 0.069 3.931 19 C -0.471 4.471 20 H 0.114 0.886 21 C -0.136 4.136 22 N -0.423 5.423 23 Si 0.731 3.269 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.166 1.166 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.088 -14.346 2.431 19.571 hybrid contribution -0.343 1.242 -0.545 1.399 sum -13.431 -13.104 1.886 18.859 Atomic orbital electron populations 1.23272 0.76410 1.03638 1.02632 1.86511 1.23342 1.33496 1.84063 1.23661 0.91705 0.81321 0.71884 1.90684 1.67194 1.36238 1.45114 1.21565 0.87134 1.00533 1.03329 0.86867 1.21918 1.01817 1.00293 0.95786 1.21099 0.79252 0.93048 1.05109 1.57526 1.15434 1.88956 1.21744 1.21534 0.98538 1.02053 0.83272 1.02075 0.72670 0.75005 0.72374 1.93552 1.38932 1.79500 1.83346 1.93559 1.71073 1.77972 1.52606 1.29991 1.05909 1.23587 1.12238 1.20064 0.99985 0.94922 1.02743 1.20715 0.97446 0.94127 0.98824 1.21321 0.96634 0.98805 1.04879 1.17792 0.92800 0.91260 0.91213 1.19510 1.12597 1.08261 1.06761 0.88643 1.26163 0.92924 0.93209 1.01329 1.69680 1.25179 1.08740 1.38675 0.86384 0.77587 0.80866 0.82022 1.19388 1.21270 1.16623 1.20834 0.96216 0.94064 1.01556 0.91905 0.91794 0.88141 0.91590 0.90091 0.91697 0.88717 0.89135 0.92439 0.90340 0.90863 0.87021 0.87836 0.87566 0.90155 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.62 10.47 -39.25 -0.41 -4.03 16 3 C 0.47 5.48 7.26 36.01 0.26 5.74 16 4 O -0.51 -7.04 15.67 -18.75 -0.29 -7.34 16 5 C -0.10 -1.14 3.03 -91.77 -0.28 -1.42 16 6 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 7 C -0.14 -1.66 7.56 37.15 0.28 -1.38 16 8 C 0.14 1.74 4.34 -4.04 -0.02 1.72 16 9 N -1.00 -13.53 2.91 -121.76 -0.35 -13.89 16 10 C 0.09 1.02 10.33 59.85 0.62 1.64 16 11 S 2.68 46.73 4.81 -107.50 -0.52 46.22 16 12 O -0.96 -18.87 16.34 -57.17 -0.93 -19.80 16 13 O -0.96 -17.13 12.67 -57.17 -0.72 -17.86 16 14 C -0.63 -12.87 5.97 -39.66 -0.24 -13.10 16 15 C -0.16 -3.17 9.53 -39.29 -0.37 -3.54 16 16 C -0.09 -1.92 10.02 -39.66 -0.40 -2.32 16 17 C -0.20 -4.57 7.18 -38.87 -0.28 -4.85 16 18 C 0.07 1.81 5.10 -106.82 -0.55 1.26 16 19 C -0.44 -11.54 9.57 -37.74 -0.36 -11.90 16 20 H 0.10 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 22 N -0.80 -20.54 13.93 55.55 0.77 -19.76 16 23 Si 0.91 20.08 24.52 -169.99 -4.17 15.91 16 24 H -0.27 -5.69 6.71 56.52 0.38 -5.31 16 25 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 27 C -0.11 -2.40 9.26 -38.87 -0.36 -2.76 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 32 H 0.08 1.05 7.45 -51.93 -0.39 0.66 16 33 H 0.06 0.84 5.77 -51.93 -0.30 0.54 16 34 H 0.09 1.25 7.61 -51.93 -0.40 0.86 16 35 H 0.09 1.00 7.78 -51.93 -0.40 0.59 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.96 7.79 -51.93 -0.40 0.55 16 38 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 39 H 0.11 2.01 7.59 -52.49 -0.40 1.61 16 40 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.11 2.42 4.73 -52.48 -0.25 2.17 16 42 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 43 H 0.12 2.56 7.60 -52.48 -0.40 2.16 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -30.81 364.59 -7.75 -38.56 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.90 Total: 4.07 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -0.72 Total: -27.58 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.42 Total: -33.65 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -2.36 Total: -49.03 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.17 Total: 15.91 kcal Atomic # 16 Polarization: 46.73 SS G_CDS: -0.52 Total: 46.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.81 -7.75 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.155 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds