Wall clock time and date at job start Sat Apr 11 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00192 * 2 1 4 4 O 1.20823 * 120.00139 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99711 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47091 * 300.00093 * 5 3 2 7 7 C 1.52992 * 109.47053 * 60.00639 * 5 3 2 8 8 C 1.52997 * 109.46674 * 180.02562 * 5 3 2 9 9 N 1.46502 * 109.47123 * 175.00093 * 8 5 3 10 10 C 1.46498 * 119.99899 * 275.00423 * 9 8 5 11 11 S 1.65597 * 120.00033 * 94.99841 * 9 8 5 12 12 O 1.42100 * 106.40352 * 203.54181 * 11 9 8 13 13 O 1.42102 * 106.40326 * 336.46037 * 11 9 8 14 14 C 1.76201 * 107.21987 * 90.00317 * 11 9 8 15 15 C 1.38664 * 119.87373 * 269.73163 * 14 11 9 16 16 C 1.38607 * 120.49950 * 179.72041 * 15 14 11 17 17 C 1.37640 * 120.24702 * 0.55023 * 16 15 14 18 18 C 1.40697 * 119.74687 * 359.72216 * 17 16 15 19 19 C 1.41397 * 120.24907 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00230 * 150.20698 * 19 18 17 21 21 C 1.39948 * 119.99585 * 330.21248 * 19 18 17 22 22 N 1.30831 * 119.99593 * 161.73131 * 21 19 18 23 23 Si 1.86801 * 120.00172 * 341.73342 * 21 19 18 24 24 H 1.48500 * 109.46947 * 95.41159 * 23 21 19 25 25 H 1.48505 * 109.46917 * 215.41104 * 23 21 19 26 26 H 1.48498 * 109.47007 * 335.40989 * 23 21 19 27 27 C 1.37587 * 119.87530 * 89.99591 * 14 11 9 28 28 H 1.09002 * 109.47175 * 299.99666 * 1 2 3 29 29 H 1.09001 * 109.47289 * 59.99086 * 1 2 3 30 30 H 1.09000 * 109.47792 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47222 * 300.00000 * 7 5 3 32 32 H 1.09006 * 109.47464 * 59.99386 * 7 5 3 33 33 H 1.08998 * 109.47231 * 179.97438 * 7 5 3 34 34 H 1.09000 * 109.47283 * 295.00312 * 8 5 3 35 35 H 1.08999 * 109.47406 * 55.00182 * 8 5 3 36 36 H 1.08998 * 109.47389 * 89.99700 * 10 9 8 37 37 H 1.09006 * 109.46849 * 209.99939 * 10 9 8 38 38 H 1.09004 * 109.47207 * 329.99368 * 10 9 8 39 39 H 1.08001 * 119.74996 * 359.97438 * 15 14 11 40 40 H 1.08000 * 119.87676 * 180.25250 * 16 15 14 41 41 H 1.08005 * 120.13028 * 179.70517 * 17 16 15 42 42 H 0.97004 * 119.99664 * 180.02562 * 22 21 19 43 43 H 1.08003 * 120.13205 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7804 0.8891 7 6 4.1128 0.5815 -1.2502 8 6 4.0002 2.7419 0.0002 9 7 5.4582 2.8200 0.1200 10 6 6.0878 2.7789 1.4422 11 16 6.3946 2.9544 -1.2391 12 8 7.6814 2.4627 -0.8902 13 8 5.6251 2.4262 -2.3106 14 6 6.5918 4.6741 -1.5687 15 6 5.6830 5.3294 -2.3857 16 6 5.8224 6.6831 -2.6489 17 6 6.8733 7.3897 -2.1097 18 6 7.8047 6.7339 -1.2839 19 6 8.8881 7.4496 -0.7239 20 1 9.3021 7.1463 0.2264 21 6 9.4237 8.5510 -1.4011 22 7 10.1599 9.4199 -0.7572 23 14 9.0875 8.7804 -3.2242 24 1 7.9299 9.6932 -3.4030 25 1 10.2852 9.3658 -3.8786 26 1 8.7801 7.4646 -3.8403 27 6 7.6499 5.3604 -1.0188 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.8037 -0.4638 -1.2504 32 1 3.7227 1.0759 -2.1400 33 1 5.2013 0.6388 -1.2509 34 1 3.6863 3.2141 -0.9307 35 1 3.5384 3.2569 0.8425 36 1 6.3036 1.7446 1.7099 37 1 7.0160 3.3500 1.4205 38 1 5.4121 3.2118 2.1799 39 1 4.8580 4.7818 -2.8169 40 1 5.1064 7.1843 -3.2834 41 1 6.9828 8.4434 -2.3199 42 1 10.5309 10.1835 -1.2265 43 1 8.3588 4.8472 -0.3859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619476520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:51 Heat of formation + Delta-G solvation = -157.539450 kcal Electronic energy + Delta-G solvation = -28157.548342 eV Core-core repulsion = 24101.122680 eV Total energy + Delta-G solvation = -4056.425662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64028 -39.70182 -38.59084 -38.15458 -37.32128 -36.91120 -35.65626 -34.04892 -32.55579 -31.91007 -28.87663 -28.24954 -27.24561 -26.52063 -24.37648 -23.93727 -22.70908 -21.32419 -20.37655 -19.52669 -18.95549 -18.23607 -18.15157 -17.76582 -17.40187 -17.17662 -16.97646 -16.59402 -15.85358 -15.51551 -15.30735 -15.18239 -14.76768 -14.69482 -14.33475 -14.15517 -14.09976 -13.99486 -13.68661 -13.58483 -13.35690 -13.29388 -13.08419 -13.04948 -12.90435 -12.72496 -12.55675 -12.51596 -12.29604 -12.02926 -11.98873 -11.79813 -11.75637 -11.56448 -11.40227 -11.07773 -10.18599 -9.98520 -9.71221 -8.98671 -6.61061 -0.62647 0.16376 0.62456 1.13513 1.19440 1.34092 1.41268 1.64234 2.01074 2.06042 2.40220 2.70709 3.26430 3.32872 3.53465 3.67051 3.86570 4.05966 4.14585 4.24216 4.30293 4.35242 4.37190 4.41029 4.52324 4.69673 4.71417 4.73318 4.76645 4.82114 4.82264 4.92399 4.99199 5.04171 5.05294 5.29765 5.32007 5.38844 5.41027 5.55077 5.60916 5.74124 5.96736 6.22294 6.55790 6.68177 6.68720 8.09298 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.003004 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.164987 B = 9317.381360 C = 9628.116035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.477 3.523 4 O -0.533 6.533 5 C -0.100 4.100 6 H 0.142 0.858 7 C -0.143 4.143 8 C 0.135 3.865 9 N -0.990 5.990 10 C 0.079 3.921 11 S 2.705 3.295 12 O -0.985 6.985 13 O -0.963 6.963 14 C -0.638 4.638 15 C -0.144 4.144 16 C -0.097 4.097 17 C -0.207 4.207 18 C 0.054 3.946 19 C -0.482 4.482 20 H 0.065 0.935 21 C 0.050 3.950 22 N -0.839 5.839 23 Si 0.954 3.046 24 H -0.249 1.249 25 H -0.273 1.273 26 H -0.257 1.257 27 C -0.124 4.124 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.109 0.891 42 H 0.296 0.704 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.080 -15.932 2.118 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.423 6.423 5 C -0.121 4.121 6 H 0.159 0.841 7 C -0.200 4.200 8 C 0.009 3.991 9 N -0.829 5.829 10 C -0.065 4.065 11 S 2.798 3.202 12 O -0.976 6.976 13 O -0.953 6.953 14 C -0.725 4.725 15 C -0.164 4.164 16 C -0.116 4.116 17 C -0.226 4.226 18 C 0.051 3.949 19 C -0.511 4.511 20 H 0.083 0.917 21 C -0.166 4.166 22 N -0.464 5.464 23 Si 0.777 3.223 24 H -0.174 1.174 25 H -0.199 1.199 26 H -0.181 1.181 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.149 0.851 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.761 -16.098 1.741 22.596 hybrid contribution 0.251 1.539 -0.284 1.586 sum -15.509 -14.558 1.457 21.321 Atomic orbital electron populations 1.23567 0.74775 1.05726 1.02579 1.86497 1.24937 1.32542 1.83530 1.23696 0.91831 0.81332 0.71103 1.90677 1.67820 1.37182 1.46601 1.21523 0.86933 0.99537 1.04130 0.84067 1.21908 1.00935 1.01588 0.95596 1.21266 0.78030 0.94444 1.05367 1.57227 1.15841 1.88359 1.21444 1.21841 0.98498 1.03716 0.82479 1.01472 0.72409 0.73394 0.72972 1.93523 1.40892 1.79208 1.83944 1.93559 1.70886 1.77160 1.53704 1.30610 1.04845 1.25820 1.11230 1.20598 0.99895 0.95051 1.00906 1.21169 0.97232 0.94527 0.98639 1.21507 0.97093 0.99253 1.04759 1.17964 0.92829 0.92136 0.91992 1.19485 1.14621 1.10221 1.06754 0.91731 1.26777 0.92651 0.92709 1.04472 1.69701 1.26911 1.09715 1.40121 0.85656 0.78600 0.80352 0.77728 1.17384 1.19886 1.18063 1.20901 0.97371 0.93764 1.02402 0.91712 0.92157 0.85054 0.89585 0.91602 0.92882 0.89749 0.87528 0.90047 0.91892 0.88138 0.84091 0.84037 0.87335 0.89286 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.24 10.47 -51.39 -0.54 -6.78 16 3 C 0.48 9.84 7.26 71.24 0.52 10.35 16 4 O -0.53 -13.78 15.67 21.97 0.34 -13.44 16 5 C -0.10 -1.88 3.03 -11.54 -0.03 -1.92 16 6 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 7 C -0.14 -3.01 7.56 71.98 0.54 -2.46 16 8 C 0.13 2.95 4.34 86.38 0.37 3.32 16 9 N -0.99 -24.61 2.91 -539.12 -1.57 -26.18 16 10 C 0.08 1.59 10.33 127.77 1.32 2.91 16 11 S 2.71 90.49 4.81 -56.49 -0.27 90.22 16 12 O -0.99 -38.07 16.34 -128.00 -2.09 -40.16 16 13 O -0.96 -32.40 12.67 -128.00 -1.62 -34.02 16 14 C -0.64 -25.60 5.97 22.22 0.13 -25.47 16 15 C -0.14 -5.50 9.53 22.46 0.21 -5.28 16 16 C -0.10 -3.82 10.02 22.22 0.22 -3.59 16 17 C -0.21 -9.47 7.18 22.73 0.16 -9.31 16 18 C 0.05 2.73 5.10 -21.29 -0.11 2.63 16 19 C -0.48 -26.51 9.57 23.46 0.22 -26.29 16 20 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 21 C 0.05 2.61 5.40 85.26 0.46 3.07 16 22 N -0.84 -44.84 13.93 21.83 0.30 -44.54 16 23 Si 0.95 41.49 24.52 68.60 1.68 43.17 16 24 H -0.25 -9.97 6.71 99.48 0.67 -9.30 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.26 -11.60 6.86 99.48 0.68 -10.91 16 27 C -0.12 -5.73 9.26 22.73 0.21 -5.52 16 28 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.44 8.11 -2.39 -0.02 1.42 16 32 H 0.06 1.58 7.45 -2.38 -0.02 1.56 16 33 H 0.05 1.25 5.77 -2.39 -0.01 1.23 16 34 H 0.08 2.04 7.61 -2.39 -0.02 2.02 16 35 H 0.11 2.03 7.78 -2.39 -0.02 2.01 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.49 7.79 -2.38 -0.02 1.47 16 38 H 0.10 1.49 7.94 -2.38 -0.02 1.47 16 39 H 0.14 4.55 7.59 -2.91 -0.02 4.53 16 40 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.11 4.86 4.73 -2.91 -0.01 4.84 16 42 H 0.30 14.17 8.30 -92.71 -0.77 13.40 16 43 H 0.12 5.26 7.60 -2.91 -0.02 5.24 16 Total: -1.00 -68.40 364.59 2.64 -65.76 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.96 Total: 22.02 kcal Atomic # 6 Polarization: -61.48 SS G_CDS: 5.44 Total: -56.04 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.26 Total: -70.72 kcal Atomic # 8 Polarization: -90.50 SS G_CDS: -3.91 Total: -94.41 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.68 Total: 43.17 kcal Atomic # 16 Polarization: 90.49 SS G_CDS: -0.27 Total: 90.22 kcal Total: -68.40 2.64 -65.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.777 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds