Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46979 * 2 1 4 4 C 1.46504 * 120.00015 * 275.00060 * 3 2 1 5 5 C 1.52997 * 109.46568 * 274.99800 * 4 3 2 6 6 C 1.50701 * 109.47015 * 180.02562 * 5 4 3 7 7 O 1.20826 * 119.99736 * 0.02562 * 6 5 4 8 8 O 1.34234 * 120.00072 * 180.02562 * 6 5 4 9 9 C 1.45201 * 116.99756 * 179.97438 * 8 6 5 10 10 S 1.65603 * 119.99981 * 94.99397 * 3 2 1 11 11 O 1.42101 * 106.40420 * 336.46207 * 10 3 2 12 12 O 1.42093 * 106.40486 * 203.53953 * 10 3 2 13 13 C 1.76202 * 107.21304 * 89.99978 * 10 3 2 14 14 C 1.38656 * 119.87802 * 270.24806 * 13 10 3 15 15 C 1.38611 * 120.50290 * 180.30014 * 14 13 10 16 16 C 1.37646 * 120.24720 * 359.45638 * 15 14 13 17 17 C 1.40700 * 119.74049 * 0.26612 * 16 15 14 18 18 C 1.41394 * 120.23887 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99918 * 204.39256 * 18 17 16 20 20 C 1.39939 * 120.00458 * 24.38628 * 18 17 16 21 21 N 1.30826 * 119.99815 * 17.86380 * 20 18 17 22 22 Si 1.86807 * 120.00442 * 197.86044 * 20 18 17 23 23 H 1.48504 * 109.46582 * 94.69503 * 22 20 18 24 24 H 1.48499 * 109.47234 * 214.69507 * 22 20 18 25 25 H 1.48502 * 109.46792 * 334.69880 * 22 20 18 26 26 C 1.37595 * 119.87364 * 90.00510 * 13 10 3 27 27 H 1.09005 * 109.46970 * 59.99975 * 1 2 3 28 28 H 1.08995 * 109.47347 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47255 * 300.00326 * 1 2 3 30 30 H 1.08992 * 109.47191 * 240.00218 * 2 1 3 31 31 H 1.08994 * 109.46524 * 119.99804 * 2 1 3 32 32 H 1.08997 * 109.47059 * 34.99975 * 4 3 2 33 33 H 1.09002 * 109.46908 * 155.00378 * 4 3 2 34 34 H 1.08997 * 109.47574 * 299.99860 * 5 4 3 35 35 H 1.09000 * 109.47509 * 60.00435 * 5 4 3 36 36 H 1.09003 * 109.47067 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47025 * 299.99801 * 9 8 6 38 38 H 1.08997 * 109.47075 * 60.00409 * 9 8 6 39 39 H 1.08005 * 119.75084 * 0.05438 * 14 13 10 40 40 H 1.07994 * 119.87907 * 179.72408 * 15 14 13 41 41 H 1.07991 * 120.12819 * 180.25140 * 16 15 14 42 42 H 0.97002 * 120.00124 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.13108 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5152 1.7840 -1.8917 6 6 3.6595 2.5328 -3.1915 7 8 2.7685 3.2527 -3.5760 8 8 4.7777 2.3999 -3.9221 9 6 4.8473 3.1504 -5.1631 10 16 2.4121 2.1203 1.4287 11 8 1.6867 1.4416 2.4448 12 8 2.3056 3.5186 1.1999 13 6 4.1169 1.7941 1.7321 14 6 4.4877 0.6644 2.4454 15 6 5.8246 0.3985 2.6968 16 6 6.8006 1.2496 2.2301 17 6 6.4362 2.3959 1.5001 18 6 7.4300 3.2776 1.0162 19 1 7.1852 4.3107 0.8180 20 6 8.7307 2.8118 0.7941 21 7 8.9569 1.5274 0.6911 22 14 10.1443 4.0240 0.6445 23 1 10.8006 4.1845 1.9669 24 1 11.1321 3.5134 -0.3397 25 1 9.6236 5.3375 0.1875 26 6 5.0754 2.6588 1.2558 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8098 -1.9453 33 1 2.0922 3.1803 -1.0756 34 1 4.3117 2.0829 -1.2103 35 1 3.5814 0.7124 -2.0800 36 1 5.8007 2.9538 -5.6536 37 1 4.0314 2.8455 -5.8184 38 1 4.7624 4.2157 -4.9487 39 1 3.7289 -0.0114 2.8113 40 1 6.1019 -0.4820 3.2573 41 1 7.8418 1.0384 2.4236 42 1 9.8585 1.2045 0.5368 43 1 4.7846 3.5359 0.6967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619477942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = -147.198995 kcal Electronic energy + Delta-G solvation = -28570.496226 eV Core-core repulsion = 24514.518960 eV Total energy + Delta-G solvation = -4055.977266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38630 -37.69362 -37.20099 -36.80075 -36.24164 -35.32930 -33.88649 -32.23876 -30.11863 -29.83216 -29.48473 -27.52197 -25.52580 -24.31704 -22.49023 -21.86950 -21.03645 -20.59731 -18.65138 -18.09849 -17.43259 -17.22626 -16.59259 -16.43717 -15.94239 -15.75052 -15.27257 -14.78202 -14.46176 -14.20886 -13.84682 -13.60857 -13.48897 -13.35969 -13.25187 -12.79697 -12.61358 -12.33274 -12.11017 -11.95694 -11.86918 -11.72670 -11.61104 -11.55551 -11.43551 -11.41338 -11.03444 -10.95597 -10.93074 -10.77318 -10.71146 -10.60464 -10.44858 -9.81072 -9.66639 -9.39118 -8.96011 -8.06843 -7.74827 -6.96573 -4.57573 0.91666 2.14170 2.27631 2.58982 2.73883 2.98085 3.02521 3.03968 3.45192 3.80364 4.21864 4.37213 4.72938 4.79071 4.86785 5.05339 5.09632 5.12386 5.18467 5.32296 5.33925 5.41570 5.46890 5.52396 5.64559 5.80276 5.86916 5.99415 6.04568 6.12645 6.24357 6.26551 6.44030 6.59417 6.64519 6.72922 6.88754 7.01045 7.17367 7.33708 7.68778 7.77100 7.79950 7.90278 8.36665 8.63218 8.67827 9.98640 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008793 B = 0.005206 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.530079 B = 5376.999762 C = 7644.850115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 N -0.998 5.998 4 C 0.132 3.868 5 C -0.146 4.146 6 C 0.472 3.528 7 O -0.514 6.514 8 O -0.354 6.354 9 C 0.036 3.964 10 S 2.682 3.318 11 O -0.969 6.969 12 O -0.968 6.968 13 C -0.632 4.632 14 C -0.147 4.147 15 C -0.120 4.120 16 C -0.117 4.117 17 C 0.094 3.906 18 C -0.459 4.459 19 H 0.083 0.917 20 C 0.077 3.923 21 N -0.792 5.792 22 Si 0.910 3.090 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.260 1.260 26 C -0.131 4.131 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.837 -3.750 -7.406 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.005 4.005 3 N -0.833 5.833 4 C 0.006 3.994 5 C -0.185 4.185 6 C 0.315 3.685 7 O -0.402 6.402 8 O -0.270 6.270 9 C -0.058 4.058 10 S 2.778 3.222 11 O -0.959 6.959 12 O -0.958 6.958 13 C -0.724 4.724 14 C -0.168 4.168 15 C -0.139 4.139 16 C -0.137 4.137 17 C 0.090 3.910 18 C -0.488 4.488 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.417 5.417 22 Si 0.734 3.266 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.184 1.184 26 C -0.152 4.152 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.140 0.860 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.528 -3.215 -7.112 10.844 hybrid contribution 1.600 0.171 -0.457 1.673 sum -5.929 -3.043 -7.569 10.085 Atomic orbital electron populations 1.22225 0.96062 1.02230 1.02682 1.21228 0.94378 0.81421 1.03480 1.57676 1.80053 1.23794 1.21804 1.21065 0.95008 0.98207 0.85094 1.22015 1.02175 1.02184 0.92163 1.23625 0.79396 0.79697 0.85781 1.90653 1.41010 1.37491 1.71057 1.86573 1.40836 1.65199 1.34424 1.23250 1.03094 0.96289 0.83195 1.02018 0.75011 0.73034 0.72091 1.93510 1.71626 1.75501 1.55265 1.93522 1.87310 1.30064 1.84904 1.29813 1.21463 1.06413 1.14668 1.20064 0.96141 0.96739 1.03872 1.20813 0.93133 0.99099 1.00882 1.21651 0.98974 0.95941 0.97088 1.17669 0.91218 0.92335 0.89771 1.19636 0.93209 0.97580 1.38402 0.89904 1.25917 1.00351 0.95698 0.92216 1.69775 1.23432 1.14560 1.33922 0.86255 0.79987 0.81314 0.79025 1.19209 1.20136 1.18363 1.20739 0.93071 0.98749 1.02670 0.92386 0.91584 0.91800 0.90453 0.89671 0.89267 0.87900 0.85996 0.87042 0.88190 0.92114 0.91815 0.87661 0.88383 0.85737 0.90558 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 37.16 0.38 -1.47 16 2 C 0.12 1.43 6.07 -4.04 -0.02 1.40 16 3 N -1.00 -14.58 2.78 -114.38 -0.32 -14.90 16 4 C 0.13 1.83 4.97 -4.04 -0.02 1.81 16 5 C -0.15 -2.04 6.13 -27.88 -0.17 -2.21 16 6 C 0.47 7.02 7.96 36.01 0.29 7.30 16 7 O -0.51 -8.38 15.73 -18.75 -0.29 -8.68 16 8 O -0.35 -5.10 10.57 -39.27 -0.41 -5.52 16 9 C 0.04 0.38 10.56 101.05 1.07 1.45 16 10 S 2.68 50.05 5.64 -107.50 -0.61 49.45 16 11 O -0.97 -19.22 16.25 -57.17 -0.93 -20.14 16 12 O -0.97 -20.27 15.82 -57.17 -0.90 -21.17 16 13 C -0.63 -13.29 5.96 -39.66 -0.24 -13.53 16 14 C -0.15 -3.06 9.53 -39.29 -0.37 -3.44 16 15 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 16 C -0.12 -2.80 8.70 -38.87 -0.34 -3.14 16 17 C 0.09 2.33 5.58 -106.82 -0.60 1.73 16 18 C -0.46 -11.41 9.05 -37.75 -0.34 -11.76 16 19 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 20 C 0.08 1.79 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -18.92 10.95 55.55 0.61 -18.31 16 22 Si 0.91 17.68 29.60 -169.99 -5.03 12.65 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 24 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 C -0.13 -3.01 8.16 -38.87 -0.32 -3.33 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.08 1.03 7.61 -51.93 -0.40 0.64 16 32 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 33 H 0.10 1.58 6.87 -51.93 -0.36 1.23 16 34 H 0.12 1.97 7.00 -51.93 -0.36 1.60 16 35 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 38 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.11 1.97 7.61 -52.48 -0.40 1.57 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.12 3.05 6.15 -52.49 -0.32 2.73 16 42 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 43 H 0.11 2.44 7.60 -52.49 -0.40 2.04 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -30.30 376.97 -9.39 -39.69 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.01 Total: 7.69 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -1.17 Total: -26.45 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.29 Total: -33.21 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -2.54 Total: -55.51 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: 50.05 SS G_CDS: -0.61 Total: 49.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.30 -9.39 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619477942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.505 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds