Wall clock time and date at job start Sat Apr 11 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46979 * 2 1 4 4 C 1.46504 * 120.00015 * 275.00060 * 3 2 1 5 5 C 1.52997 * 109.46568 * 274.99800 * 4 3 2 6 6 C 1.50701 * 109.47015 * 180.02562 * 5 4 3 7 7 O 1.20826 * 119.99736 * 0.02562 * 6 5 4 8 8 O 1.34234 * 120.00072 * 180.02562 * 6 5 4 9 9 C 1.45201 * 116.99756 * 179.97438 * 8 6 5 10 10 S 1.65603 * 119.99981 * 94.99397 * 3 2 1 11 11 O 1.42101 * 106.40420 * 336.46207 * 10 3 2 12 12 O 1.42093 * 106.40486 * 203.53953 * 10 3 2 13 13 C 1.76202 * 107.21304 * 89.99978 * 10 3 2 14 14 C 1.38656 * 119.87802 * 270.24806 * 13 10 3 15 15 C 1.38611 * 120.50290 * 180.30014 * 14 13 10 16 16 C 1.37646 * 120.24720 * 359.45638 * 15 14 13 17 17 C 1.40700 * 119.74049 * 0.26612 * 16 15 14 18 18 C 1.41394 * 120.23887 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99918 * 204.39256 * 18 17 16 20 20 C 1.39939 * 120.00458 * 24.38628 * 18 17 16 21 21 N 1.30826 * 119.99815 * 17.86380 * 20 18 17 22 22 Si 1.86807 * 120.00442 * 197.86044 * 20 18 17 23 23 H 1.48504 * 109.46582 * 94.69503 * 22 20 18 24 24 H 1.48499 * 109.47234 * 214.69507 * 22 20 18 25 25 H 1.48502 * 109.46792 * 334.69880 * 22 20 18 26 26 C 1.37595 * 119.87364 * 90.00510 * 13 10 3 27 27 H 1.09005 * 109.46970 * 59.99975 * 1 2 3 28 28 H 1.08995 * 109.47347 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47255 * 300.00326 * 1 2 3 30 30 H 1.08992 * 109.47191 * 240.00218 * 2 1 3 31 31 H 1.08994 * 109.46524 * 119.99804 * 2 1 3 32 32 H 1.08997 * 109.47059 * 34.99975 * 4 3 2 33 33 H 1.09002 * 109.46908 * 155.00378 * 4 3 2 34 34 H 1.08997 * 109.47574 * 299.99860 * 5 4 3 35 35 H 1.09000 * 109.47509 * 60.00435 * 5 4 3 36 36 H 1.09003 * 109.47067 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.47025 * 299.99801 * 9 8 6 38 38 H 1.08997 * 109.47075 * 60.00409 * 9 8 6 39 39 H 1.08005 * 119.75084 * 0.05438 * 14 13 10 40 40 H 1.07994 * 119.87907 * 179.72408 * 15 14 13 41 41 H 1.07991 * 120.12819 * 180.25140 * 16 15 14 42 42 H 0.97002 * 120.00124 * 179.97438 * 21 20 18 43 43 H 1.07998 * 120.13108 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.5152 1.7840 -1.8917 6 6 3.6595 2.5328 -3.1915 7 8 2.7685 3.2527 -3.5760 8 8 4.7777 2.3999 -3.9221 9 6 4.8473 3.1504 -5.1631 10 16 2.4121 2.1203 1.4287 11 8 1.6867 1.4416 2.4448 12 8 2.3056 3.5186 1.1999 13 6 4.1169 1.7941 1.7321 14 6 4.4877 0.6644 2.4454 15 6 5.8246 0.3985 2.6968 16 6 6.8006 1.2496 2.2301 17 6 6.4362 2.3959 1.5001 18 6 7.4300 3.2776 1.0162 19 1 7.1852 4.3107 0.8180 20 6 8.7307 2.8118 0.7941 21 7 8.9569 1.5274 0.6911 22 14 10.1443 4.0240 0.6445 23 1 10.8006 4.1845 1.9669 24 1 11.1321 3.5134 -0.3397 25 1 9.6236 5.3375 0.1875 26 6 5.0754 2.6588 1.2558 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8098 -1.9453 33 1 2.0922 3.1803 -1.0756 34 1 4.3117 2.0829 -1.2103 35 1 3.5814 0.7124 -2.0800 36 1 5.8007 2.9538 -5.6536 37 1 4.0314 2.8455 -5.8184 38 1 4.7624 4.2157 -4.9487 39 1 3.7289 -0.0114 2.8113 40 1 6.1019 -0.4820 3.2573 41 1 7.8418 1.0384 2.4236 42 1 9.8585 1.2045 0.5368 43 1 4.7846 3.5359 0.6967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619477942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:05 Heat of formation + Delta-G solvation = -165.063788 kcal Electronic energy + Delta-G solvation = -28571.270901 eV Core-core repulsion = 24514.518960 eV Total energy + Delta-G solvation = -4056.751942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52811 -39.43941 -38.38722 -38.29841 -37.39125 -36.91321 -35.65443 -33.29129 -31.89295 -31.56841 -30.51863 -28.46695 -27.32638 -25.37651 -23.70580 -23.41779 -22.77923 -21.75733 -20.19560 -19.49714 -18.77766 -18.50714 -17.84642 -17.58399 -17.53266 -17.10513 -16.85209 -16.48399 -15.83196 -15.30280 -15.21049 -15.09493 -14.83268 -14.58448 -14.31591 -14.29149 -13.87287 -13.70859 -13.37340 -13.32295 -13.16929 -13.14062 -13.08213 -13.04671 -12.82637 -12.79346 -12.66865 -12.58769 -12.22257 -12.04807 -11.79478 -11.72387 -11.63803 -11.52176 -11.32192 -11.13477 -10.19645 -9.79626 -9.53958 -8.71966 -6.43344 -0.56806 0.41361 0.85789 1.11419 1.37983 1.45991 1.50241 1.65253 2.12618 2.18186 2.57956 2.74516 3.35153 3.51588 3.64601 3.76105 3.97487 4.10487 4.29175 4.30974 4.33440 4.41311 4.43883 4.45789 4.48864 4.66069 4.69543 4.80217 4.85495 4.92284 4.95242 4.98151 5.08576 5.21894 5.26958 5.35416 5.41894 5.44419 5.57612 5.64840 5.91147 5.95667 6.12303 6.54512 6.66745 6.81561 6.86544 8.25564 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008793 B = 0.005206 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.530079 B = 5376.999762 C = 7644.850115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 N -0.987 5.987 4 C 0.133 3.867 5 C -0.144 4.144 6 C 0.474 3.526 7 O -0.532 6.532 8 O -0.369 6.369 9 C 0.027 3.973 10 S 2.703 3.297 11 O -0.977 6.977 12 O -0.994 6.994 13 C -0.637 4.637 14 C -0.144 4.144 15 C -0.121 4.121 16 C -0.138 4.138 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.074 0.926 20 C 0.043 3.957 21 N -0.816 5.816 22 Si 0.976 3.024 23 H -0.263 1.263 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.144 4.144 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.292 0.708 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -5.163 -8.367 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.825 5.825 4 C 0.007 3.993 5 C -0.183 4.183 6 C 0.318 3.682 7 O -0.422 6.422 8 O -0.285 6.285 9 C -0.066 4.066 10 S 2.797 3.203 11 O -0.968 6.968 12 O -0.984 6.984 13 C -0.726 4.726 14 C -0.165 4.165 15 C -0.140 4.140 16 C -0.158 4.158 17 C 0.064 3.936 18 C -0.525 4.525 19 H 0.093 0.907 20 C -0.173 4.173 21 N -0.442 5.442 22 Si 0.797 3.203 23 H -0.187 1.187 24 H -0.188 1.188 25 H -0.186 1.186 26 C -0.165 4.165 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.157 0.843 36 H 0.144 0.856 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.094 -4.647 -8.057 12.330 hybrid contribution 1.662 0.530 -0.211 1.757 sum -6.433 -4.116 -8.268 11.256 Atomic orbital electron populations 1.22237 0.94927 1.03754 1.02213 1.21632 0.95394 0.79601 1.05049 1.57401 1.79368 1.25126 1.20573 1.21147 0.95986 0.97205 0.84937 1.21997 1.01264 1.03732 0.91294 1.23717 0.79280 0.79306 0.85935 1.90639 1.41653 1.38225 1.71647 1.86554 1.40527 1.65699 1.35695 1.23560 1.05136 0.95783 0.82108 1.01359 0.73720 0.72440 0.72779 1.93491 1.71119 1.75562 1.56609 1.93486 1.87210 1.32168 1.85574 1.30253 1.22927 1.05752 1.13670 1.20443 0.96511 0.96783 1.02774 1.21137 0.93078 0.99442 1.00325 1.21643 0.99067 0.96724 0.98387 1.17985 0.92140 0.93075 0.90446 1.19814 0.94733 0.97472 1.40481 0.90739 1.26624 1.02003 0.97330 0.91379 1.69798 1.24433 1.15864 1.34092 0.85270 0.76913 0.78843 0.79252 1.18745 1.18849 1.18593 1.20736 0.93058 0.99277 1.03432 0.91352 0.89086 0.93807 0.87228 0.89813 0.86216 0.89874 0.88514 0.84331 0.85596 0.90879 0.92256 0.84992 0.85523 0.86916 0.89728 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.24 71.98 0.74 -2.41 16 2 C 0.11 2.21 6.07 86.38 0.52 2.73 16 3 N -0.99 -27.15 2.78 -515.79 -1.44 -28.59 16 4 C 0.13 3.50 4.97 86.38 0.43 3.93 16 5 C -0.14 -3.88 6.13 29.85 0.18 -3.70 16 6 C 0.47 13.78 7.96 71.24 0.57 14.35 16 7 O -0.53 -16.99 15.73 21.96 0.35 -16.64 16 8 O -0.37 -10.37 10.57 -51.46 -0.54 -10.91 16 9 C 0.03 0.55 10.56 113.37 1.20 1.75 16 10 S 2.70 99.36 5.64 -56.49 -0.32 99.04 16 11 O -0.98 -37.50 16.25 -128.00 -2.08 -39.58 16 12 O -0.99 -42.15 15.82 -128.00 -2.02 -44.18 16 13 C -0.64 -26.79 5.96 22.22 0.13 -26.66 16 14 C -0.14 -5.85 9.53 22.46 0.21 -5.63 16 15 C -0.12 -5.14 10.02 22.22 0.22 -4.91 16 16 C -0.14 -6.79 8.70 22.73 0.20 -6.59 16 17 C 0.07 3.44 5.58 -21.29 -0.12 3.32 16 18 C -0.50 -25.70 9.05 23.46 0.21 -25.48 16 19 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 20 C 0.04 2.04 5.14 85.25 0.44 2.48 16 21 N -0.82 -39.65 10.95 21.82 0.24 -39.41 16 22 Si 0.98 36.58 29.60 68.60 2.03 38.61 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 26 C -0.14 -6.84 8.16 22.73 0.19 -6.65 16 27 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 1.60 8.11 -2.39 -0.02 1.58 16 31 H 0.08 1.79 7.61 -2.39 -0.02 1.77 16 32 H 0.12 2.46 8.07 -2.39 -0.02 2.45 16 33 H 0.08 2.56 6.87 -2.39 -0.02 2.54 16 34 H 0.10 3.19 7.00 -2.39 -0.02 3.17 16 35 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 38 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 39 H 0.13 4.60 7.61 -2.91 -0.02 4.57 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.11 5.70 6.15 -2.92 -0.02 5.68 16 42 H 0.29 12.73 8.30 -92.71 -0.77 11.96 16 43 H 0.10 4.91 7.60 -2.91 -0.02 4.89 16 Total: -1.00 -66.65 376.97 2.35 -64.30 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 1.02 Total: 30.83 kcal Atomic # 6 Polarization: -58.59 SS G_CDS: 5.12 Total: -53.47 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.20 Total: -68.00 kcal Atomic # 8 Polarization: -107.01 SS G_CDS: -4.30 Total: -111.31 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Atomic # 16 Polarization: 99.36 SS G_CDS: -0.32 Total: 99.04 kcal Total: -66.65 2.35 -64.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619477942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.767 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds