Wall clock time and date at job start Sat Apr 11 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47614 * 2 1 4 4 C 1.34227 * 117.00209 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00045 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00090 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47381 * 179.97438 * 6 4 3 8 8 N 1.46494 * 109.47543 * 180.02562 * 7 6 4 9 9 C 1.46501 * 119.99965 * 275.00298 * 8 7 6 10 10 S 1.65600 * 120.00347 * 94.99403 * 8 7 6 11 11 O 1.42102 * 106.40353 * 156.45902 * 10 8 7 12 12 O 1.42101 * 106.39748 * 23.54812 * 10 8 7 13 13 C 1.76193 * 107.22282 * 270.00410 * 10 8 7 14 14 C 1.38649 * 119.87686 * 270.29710 * 13 10 8 15 15 C 1.38617 * 120.50384 * 180.25774 * 14 13 10 16 16 C 1.37641 * 120.24556 * 359.44340 * 15 14 13 17 17 C 1.40700 * 119.74456 * 0.27362 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46564 * 60.00381 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46916 * 300.00498 * 22 20 18 26 26 C 1.37604 * 119.87246 * 89.99680 * 13 10 8 27 27 H 1.09001 * 109.47122 * 59.99625 * 1 2 3 28 28 H 1.09002 * 109.47616 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47164 * 299.99898 * 1 2 3 30 30 H 1.09008 * 109.46732 * 240.00073 * 2 1 3 31 31 H 1.09001 * 109.47122 * 120.00375 * 2 1 3 32 32 H 1.09001 * 109.46820 * 60.00090 * 6 4 3 33 33 H 1.08996 * 109.47224 * 299.99956 * 6 4 3 34 34 H 1.09003 * 109.47080 * 59.99747 * 7 6 4 35 35 H 1.09004 * 109.46942 * 300.00495 * 7 6 4 36 36 H 1.09001 * 109.47235 * 270.00069 * 9 8 7 37 37 H 1.09002 * 109.47266 * 29.99467 * 9 8 7 38 38 H 1.09002 * 109.47349 * 149.99384 * 9 8 7 39 39 H 1.08005 * 119.75337 * 359.97438 * 14 13 10 40 40 H 1.07992 * 119.88323 * 179.71839 * 15 14 13 41 41 H 1.07998 * 120.13267 * 180.25377 * 16 15 14 42 42 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.13007 * 0.04669 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8571 -0.0001 8 7 6.0088 4.2107 0.0010 9 6 6.1866 4.9310 -1.2623 10 16 6.4408 4.9270 1.4303 11 8 7.4102 5.9146 1.1073 12 8 6.6834 3.8717 2.3506 13 6 5.0277 5.7933 2.0277 14 6 4.8201 7.1136 1.6589 15 6 3.7156 7.8092 2.1255 16 6 2.8056 7.1909 2.9527 17 6 3.0030 5.8496 3.3288 18 6 2.0752 5.2042 4.1785 19 1 2.3867 4.3606 4.7765 20 6 0.7533 5.6588 4.2447 21 7 0.2774 6.4265 3.2982 22 14 -0.3318 5.1692 5.6843 23 1 0.2773 5.6520 6.9497 24 1 -1.6771 5.7760 5.5189 25 1 -0.4583 3.6903 5.7283 26 6 4.1311 5.1551 2.8536 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 3.5854 3.4688 0.8905 33 1 3.5846 3.4699 -0.8895 34 1 5.7847 2.3253 -0.8904 35 1 5.7848 2.3245 0.8896 36 1 7.1766 4.7183 -1.6656 37 1 5.4272 4.6082 -1.9745 38 1 6.0881 6.0023 -1.0867 39 1 5.5267 7.6054 1.0067 40 1 3.5661 8.8386 1.8355 41 1 1.9436 7.7333 3.3119 42 1 -0.6390 6.7413 3.3439 43 1 4.2925 4.1254 3.1364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:10 Heat of formation + Delta-G solvation = -148.016798 kcal Electronic energy + Delta-G solvation = -28318.990747 eV Core-core repulsion = 24262.978018 eV Total energy + Delta-G solvation = -4056.012729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.40580 -37.69329 -37.08993 -36.73439 -36.11389 -35.33872 -33.88679 -32.02602 -30.97141 -30.11123 -29.83262 -26.63006 -25.52072 -24.12787 -22.70679 -21.86232 -21.03908 -20.65084 -18.71672 -18.15383 -17.52672 -17.16218 -16.61380 -16.34574 -15.94086 -15.64864 -15.22158 -14.82122 -14.61115 -14.20340 -13.99833 -13.49601 -13.40579 -13.30599 -13.17118 -12.82583 -12.63244 -12.47555 -12.23233 -11.97921 -11.92570 -11.71913 -11.60452 -11.59291 -11.44682 -11.39371 -11.27548 -11.05129 -10.93300 -10.88103 -10.65533 -10.51994 -10.42058 -9.83049 -9.66896 -9.37824 -8.93676 -8.07039 -7.74834 -6.96646 -4.57643 0.91121 2.14074 2.28882 2.59984 2.67884 2.97047 2.99080 3.05846 3.45056 3.79836 4.21742 4.37477 4.68840 4.80410 4.86552 4.90153 4.91902 5.01379 5.19350 5.20512 5.36989 5.50501 5.56693 5.62910 5.70405 5.73282 5.83281 5.92255 5.97604 6.04917 6.11813 6.15987 6.49992 6.58124 6.61992 6.72606 6.87728 7.00677 7.17251 7.33632 7.68685 7.76665 7.82046 7.90144 8.36183 8.62984 8.67619 9.98460 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007039 B = 0.005861 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3976.832104 B = 4776.088489 C = 7854.255836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.474 3.526 5 O -0.515 6.515 6 C -0.146 4.146 7 C 0.132 3.868 8 N -1.003 6.003 9 C 0.095 3.905 10 S 2.683 3.317 11 O -0.970 6.970 12 O -0.967 6.967 13 C -0.631 4.631 14 C -0.147 4.147 15 C -0.120 4.120 16 C -0.117 4.117 17 C 0.094 3.906 18 C -0.460 4.460 19 H 0.082 0.918 20 C 0.077 3.923 21 N -0.792 5.792 22 Si 0.910 3.090 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.131 4.131 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 -6.016 -8.828 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.317 3.683 5 O -0.403 6.403 6 C -0.186 4.186 7 C 0.006 3.994 8 N -0.839 5.839 9 C -0.051 4.051 10 S 2.780 3.220 11 O -0.960 6.960 12 O -0.957 6.957 13 C -0.723 4.723 14 C -0.168 4.168 15 C -0.139 4.139 16 C -0.137 4.137 17 C 0.091 3.909 18 C -0.489 4.489 19 H 0.100 0.900 20 C -0.142 4.142 21 N -0.417 5.417 22 Si 0.734 3.266 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.152 4.152 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.899 -6.296 -8.573 10.675 hybrid contribution -1.530 0.024 0.542 1.623 sum -0.631 -6.272 -8.031 10.210 Atomic orbital electron populations 1.21811 0.92686 1.02720 1.03870 1.23010 0.95435 0.80363 1.02411 1.86567 1.24497 1.32167 1.83736 1.23558 0.80591 0.92439 0.71745 1.90651 1.60404 1.43284 1.45987 1.22020 0.97285 0.91505 1.07758 1.21088 0.89934 0.82622 1.05757 1.57533 1.79359 1.24625 1.22343 1.21463 1.01546 0.96744 0.85329 1.01984 0.74821 0.73178 0.72052 1.93512 1.58196 1.60519 1.83779 1.93525 1.84974 1.56082 1.61127 1.29801 1.20561 1.07145 1.14822 1.20064 0.99178 0.93098 1.04500 1.20813 0.95245 0.98299 0.99571 1.21648 0.98692 0.94649 0.98665 1.17658 0.91134 0.91473 0.90671 1.19588 0.93618 1.14170 1.21495 0.89961 1.25916 0.98776 0.93411 0.96064 1.69769 1.16591 1.26364 1.28942 0.86326 0.78452 0.80013 0.81821 1.18658 1.20207 1.18799 1.20744 0.96593 0.98293 0.99618 0.91530 0.90430 0.91099 0.91441 0.91150 0.85999 0.87072 0.89252 0.87854 0.92474 0.91108 0.90668 0.87661 0.88380 0.85739 0.90491 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.35 -5.19 10.22 -39.25 -0.40 -5.59 16 4 C 0.47 7.13 7.96 36.00 0.29 7.41 16 5 O -0.51 -8.48 15.73 -18.75 -0.29 -8.77 16 6 C -0.15 -2.06 6.13 -27.88 -0.17 -2.23 16 7 C 0.13 1.84 4.95 -4.04 -0.02 1.82 16 8 N -1.00 -14.73 3.18 -121.76 -0.39 -15.12 16 9 C 0.09 1.09 10.31 59.85 0.62 1.71 16 10 S 2.68 50.25 5.64 -107.50 -0.61 49.64 16 11 O -0.97 -19.48 16.35 -57.17 -0.93 -20.41 16 12 O -0.97 -20.23 15.82 -57.17 -0.90 -21.14 16 13 C -0.63 -13.30 5.96 -39.66 -0.24 -13.54 16 14 C -0.15 -3.07 9.53 -39.29 -0.37 -3.45 16 15 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 16 C -0.12 -2.80 8.70 -38.87 -0.34 -3.14 16 17 C 0.09 2.34 5.58 -106.82 -0.60 1.74 16 18 C -0.46 -11.42 9.05 -37.74 -0.34 -11.77 16 19 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 20 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -18.90 10.95 55.55 0.61 -18.29 16 22 Si 0.91 17.67 29.60 -169.99 -5.03 12.64 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 C -0.13 -3.01 8.16 -38.87 -0.32 -3.33 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.71 8.13 -51.92 -0.42 0.29 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.12 1.98 7.00 -51.93 -0.36 1.62 16 33 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 35 H 0.10 1.60 6.87 -51.93 -0.36 1.24 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 38 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 39 H 0.11 1.97 7.61 -52.48 -0.40 1.57 16 40 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.12 3.05 6.15 -52.49 -0.32 2.73 16 42 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 43 H 0.11 2.45 7.60 -52.49 -0.40 2.05 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -30.34 377.19 -9.65 -39.99 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.01 Total: 7.53 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -1.37 Total: -26.16 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.22 Total: -33.41 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -2.54 Total: -55.91 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 50.25 SS G_CDS: -0.61 Total: 49.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.34 -9.65 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.025 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds