Wall clock time and date at job start Sat Apr 11 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45196 * 109.47614 * 2 1 4 4 C 1.34227 * 117.00209 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00045 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00090 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47381 * 179.97438 * 6 4 3 8 8 N 1.46494 * 109.47543 * 180.02562 * 7 6 4 9 9 C 1.46501 * 119.99965 * 275.00298 * 8 7 6 10 10 S 1.65600 * 120.00347 * 94.99403 * 8 7 6 11 11 O 1.42102 * 106.40353 * 156.45902 * 10 8 7 12 12 O 1.42101 * 106.39748 * 23.54812 * 10 8 7 13 13 C 1.76193 * 107.22282 * 270.00410 * 10 8 7 14 14 C 1.38649 * 119.87686 * 270.29710 * 13 10 8 15 15 C 1.38617 * 120.50384 * 180.25774 * 14 13 10 16 16 C 1.37641 * 120.24556 * 359.44340 * 15 14 13 17 17 C 1.40700 * 119.74456 * 0.27362 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46564 * 60.00381 * 22 20 18 24 24 H 1.48498 * 109.47182 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46916 * 300.00498 * 22 20 18 26 26 C 1.37604 * 119.87246 * 89.99680 * 13 10 8 27 27 H 1.09001 * 109.47122 * 59.99625 * 1 2 3 28 28 H 1.09002 * 109.47616 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47164 * 299.99898 * 1 2 3 30 30 H 1.09008 * 109.46732 * 240.00073 * 2 1 3 31 31 H 1.09001 * 109.47122 * 120.00375 * 2 1 3 32 32 H 1.09001 * 109.46820 * 60.00090 * 6 4 3 33 33 H 1.08996 * 109.47224 * 299.99956 * 6 4 3 34 34 H 1.09003 * 109.47080 * 59.99747 * 7 6 4 35 35 H 1.09004 * 109.46942 * 300.00495 * 7 6 4 36 36 H 1.09001 * 109.47235 * 270.00069 * 9 8 7 37 37 H 1.09002 * 109.47266 * 29.99467 * 9 8 7 38 38 H 1.09002 * 109.47349 * 149.99384 * 9 8 7 39 39 H 1.08005 * 119.75337 * 359.97438 * 14 13 10 40 40 H 1.07992 * 119.88323 * 179.71839 * 15 14 13 41 41 H 1.07998 * 120.13267 * 180.25377 * 16 15 14 42 42 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 43 43 H 1.07994 * 120.13007 * 0.04669 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8571 -0.0001 8 7 6.0088 4.2107 0.0010 9 6 6.1866 4.9310 -1.2623 10 16 6.4408 4.9270 1.4303 11 8 7.4102 5.9146 1.1073 12 8 6.6834 3.8717 2.3506 13 6 5.0277 5.7933 2.0277 14 6 4.8201 7.1136 1.6589 15 6 3.7156 7.8092 2.1255 16 6 2.8056 7.1909 2.9527 17 6 3.0030 5.8496 3.3288 18 6 2.0752 5.2042 4.1785 19 1 2.3867 4.3606 4.7765 20 6 0.7533 5.6588 4.2447 21 7 0.2774 6.4265 3.2982 22 14 -0.3318 5.1692 5.6843 23 1 0.2773 5.6520 6.9497 24 1 -1.6771 5.7760 5.5189 25 1 -0.4583 3.6903 5.7283 26 6 4.1311 5.1551 2.8536 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8900 32 1 3.5854 3.4688 0.8905 33 1 3.5846 3.4699 -0.8895 34 1 5.7847 2.3253 -0.8904 35 1 5.7848 2.3245 0.8896 36 1 7.1766 4.7183 -1.6656 37 1 5.4272 4.6082 -1.9745 38 1 6.0881 6.0023 -1.0867 39 1 5.5267 7.6054 1.0067 40 1 3.5661 8.8386 1.8355 41 1 1.9436 7.7333 3.3119 42 1 -0.6390 6.7413 3.3439 43 1 4.2925 4.1254 3.1364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619478861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:09 Heat of formation + Delta-G solvation = -165.866017 kcal Electronic energy + Delta-G solvation = -28319.764747 eV Core-core repulsion = 24262.978018 eV Total energy + Delta-G solvation = -4056.786729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56753 -39.44021 -38.41054 -38.12899 -37.28669 -36.92343 -35.65540 -33.01661 -32.03093 -31.85864 -31.56298 -27.66033 -27.31687 -25.21352 -23.79012 -23.47099 -22.78865 -21.81524 -20.23755 -19.61920 -18.82950 -18.50074 -17.83040 -17.70464 -17.39729 -17.10974 -16.76432 -16.50330 -15.75481 -15.51910 -15.20192 -15.12260 -14.93564 -14.47272 -14.29620 -14.16877 -13.75640 -13.65706 -13.62467 -13.35050 -13.26528 -13.15053 -13.07455 -13.04400 -12.87951 -12.81328 -12.60028 -12.53086 -12.47786 -12.23483 -12.04795 -11.62542 -11.55114 -11.52428 -11.33910 -11.12809 -10.16512 -9.79776 -9.54015 -8.72145 -6.43504 -0.57394 0.41229 0.86212 1.10526 1.37130 1.45473 1.49001 1.58791 2.10583 2.17482 2.57633 2.74377 3.34747 3.51396 3.61740 3.77588 3.90091 3.99915 4.07120 4.14346 4.31357 4.33445 4.45439 4.46372 4.60991 4.72935 4.81935 4.85464 4.90318 4.91656 4.92101 4.99953 5.06334 5.08080 5.13613 5.21016 5.41542 5.44321 5.55377 5.59960 5.90939 5.95292 6.12114 6.54070 6.66469 6.81239 6.86278 8.25072 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007039 B = 0.005861 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3976.832104 B = 4776.088489 C = 7854.255836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.367 6.367 4 C 0.475 3.525 5 O -0.532 6.532 6 C -0.144 4.144 7 C 0.132 3.868 8 N -0.992 5.992 9 C 0.080 3.920 10 S 2.706 3.294 11 O -0.979 6.979 12 O -0.992 6.992 13 C -0.637 4.637 14 C -0.145 4.145 15 C -0.121 4.121 16 C -0.139 4.139 17 C 0.067 3.933 18 C -0.497 4.497 19 H 0.075 0.925 20 C 0.043 3.957 21 N -0.816 5.816 22 Si 0.975 3.025 23 H -0.263 1.263 24 H -0.263 1.263 25 H -0.261 1.261 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.292 0.708 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -6.159 -10.527 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.284 6.284 4 C 0.319 3.681 5 O -0.422 6.422 6 C -0.183 4.183 7 C 0.006 3.994 8 N -0.831 5.831 9 C -0.064 4.064 10 S 2.799 3.201 11 O -0.970 6.970 12 O -0.983 6.983 13 C -0.726 4.726 14 C -0.165 4.165 15 C -0.140 4.140 16 C -0.158 4.158 17 C 0.064 3.936 18 C -0.526 4.526 19 H 0.093 0.907 20 C -0.174 4.174 21 N -0.441 5.441 22 Si 0.796 3.204 23 H -0.187 1.187 24 H -0.188 1.188 25 H -0.185 1.185 26 C -0.165 4.165 27 H 0.089 0.911 28 H 0.123 0.877 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.156 0.844 34 H 0.139 0.861 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.761 -6.408 -10.269 12.128 hybrid contribution -1.414 0.045 0.934 1.695 sum -0.653 -6.363 -9.335 11.317 Atomic orbital electron populations 1.21841 0.90921 1.04411 1.03396 1.23320 0.96881 0.79075 1.02848 1.86563 1.24262 1.34066 1.83469 1.23670 0.80693 0.92510 0.71215 1.90636 1.60751 1.43867 1.46942 1.22008 0.97415 0.91108 1.07776 1.21182 0.89742 0.82068 1.06362 1.57237 1.79093 1.24724 1.22027 1.21863 1.03905 0.96512 0.84134 1.01288 0.73835 0.72470 0.72467 1.93492 1.58165 1.61160 1.84148 1.93490 1.85114 1.56626 1.63039 1.30245 1.20777 1.07682 1.13876 1.20448 0.99138 0.92944 1.04007 1.21138 0.94735 0.99651 0.98492 1.21643 0.99356 0.94598 1.00239 1.17976 0.92024 0.92247 0.91355 1.19785 0.94942 1.15060 1.22833 0.90703 1.26626 0.99396 0.93181 0.98151 1.69796 1.17312 1.26916 1.30094 0.85352 0.77064 0.79710 0.78306 1.18750 1.18755 1.18529 1.20746 0.97030 0.98250 1.00506 0.91071 0.87659 0.92428 0.90109 0.91635 0.88534 0.84396 0.86085 0.89793 0.90575 0.87978 0.90723 0.84965 0.85530 0.86922 0.89721 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 10.29 71.98 0.74 -1.88 16 2 C 0.05 1.18 6.19 71.98 0.45 1.62 16 3 O -0.37 -10.70 10.22 -51.38 -0.53 -11.22 16 4 C 0.48 14.09 7.96 71.23 0.57 14.65 16 5 O -0.53 -17.21 15.73 21.96 0.35 -16.87 16 6 C -0.14 -3.93 6.13 29.85 0.18 -3.75 16 7 C 0.13 3.49 4.95 86.38 0.43 3.92 16 8 N -0.99 -27.15 3.18 -539.12 -1.72 -28.87 16 9 C 0.08 1.56 10.31 127.77 1.32 2.88 16 10 S 2.71 98.96 5.64 -56.49 -0.32 98.64 16 11 O -0.98 -37.60 16.35 -128.00 -2.09 -39.70 16 12 O -0.99 -41.78 15.82 -128.00 -2.02 -43.80 16 13 C -0.64 -26.73 5.96 22.22 0.13 -26.60 16 14 C -0.14 -5.86 9.53 22.46 0.21 -5.64 16 15 C -0.12 -5.16 10.02 22.22 0.22 -4.93 16 16 C -0.14 -6.80 8.70 22.73 0.20 -6.61 16 17 C 0.07 3.47 5.58 -21.29 -0.12 3.35 16 18 C -0.50 -25.80 9.05 23.46 0.21 -25.59 16 19 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 20 C 0.04 2.04 5.14 85.25 0.44 2.48 16 21 N -0.82 -39.68 10.95 21.83 0.24 -39.44 16 22 Si 0.97 36.61 29.60 68.60 2.03 38.64 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 25 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 26 C -0.14 -6.85 8.16 22.73 0.19 -6.67 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.60 8.13 -2.38 -0.02 1.58 16 31 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.10 3.22 7.00 -2.39 -0.02 3.20 16 33 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.12 2.48 8.07 -2.39 -0.02 2.46 16 35 H 0.08 2.58 6.87 -2.38 -0.02 2.56 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 1.39 8.07 -2.39 -0.02 1.37 16 38 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 39 H 0.13 4.60 7.61 -2.91 -0.02 4.58 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.11 5.70 6.15 -2.91 -0.02 5.69 16 42 H 0.29 12.81 8.30 -92.70 -0.77 12.04 16 43 H 0.10 4.93 7.60 -2.91 -0.02 4.91 16 Total: -1.00 -66.63 377.19 2.12 -64.51 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 1.02 Total: 30.88 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 5.17 Total: -52.77 kcal Atomic # 7 Polarization: -66.84 SS G_CDS: -1.48 Total: -68.31 kcal Atomic # 8 Polarization: -107.29 SS G_CDS: -4.30 Total: -111.59 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Atomic # 16 Polarization: 98.96 SS G_CDS: -0.32 Total: 98.64 kcal Total: -66.63 2.12 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.358 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds