Wall clock time and date at job start Sat Apr 11 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.70847 * 2 1 4 4 C 1.53296 * 109.68265 * 120.53670 * 2 1 3 5 5 O 1.42962 * 109.22009 * 172.02866 * 4 2 1 6 6 C 1.42960 * 114.16720 * 297.41314 * 5 4 2 7 7 H 1.08991 * 109.51655 * 302.61101 * 6 5 4 8 8 C 1.53004 * 109.51257 * 182.50742 * 6 5 4 9 9 O 1.42894 * 109.47066 * 65.00356 * 8 6 5 10 10 C 1.53301 * 109.22035 * 62.58694 * 6 5 4 11 11 N 1.47149 * 109.68410 * 239.46397 * 2 1 3 12 12 S 1.65607 * 120.98247 * 9.76396 * 11 2 1 13 13 O 1.42099 * 106.40207 * 196.79335 * 12 11 2 14 14 O 1.42105 * 106.39645 * 329.71136 * 12 11 2 15 15 C 1.76200 * 107.21991 * 83.25186 * 12 11 2 16 16 C 1.38661 * 119.87155 * 269.73127 * 15 12 11 17 17 C 1.38616 * 120.49422 * 179.72310 * 16 15 12 18 18 C 1.37634 * 120.24974 * 0.55010 * 17 16 15 19 19 C 1.40694 * 119.74653 * 359.72057 * 18 17 16 20 20 C 1.41394 * 120.24727 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00109 * 149.17241 * 20 19 18 22 22 C 1.39949 * 120.00333 * 329.18016 * 20 19 18 23 23 N 1.30823 * 119.99464 * 346.23461 * 22 20 19 24 24 Si 1.86797 * 120.00138 * 166.22903 * 22 20 19 25 25 H 1.48502 * 109.46924 * 60.00279 * 24 22 20 26 26 H 1.48505 * 109.46824 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47363 * 300.00266 * 24 22 20 28 28 C 1.37594 * 119.87442 * 89.99914 * 15 12 11 29 29 H 1.08995 * 109.47403 * 308.93223 * 1 2 3 30 30 H 1.08997 * 109.47522 * 68.93362 * 1 2 3 31 31 H 1.09005 * 109.47191 * 188.92899 * 1 2 3 32 32 H 1.08990 * 109.51392 * 52.10267 * 4 2 1 33 33 H 1.09002 * 109.54938 * 291.97590 * 4 2 1 34 34 H 1.08999 * 109.46721 * 185.00516 * 8 6 5 35 35 H 1.09000 * 109.47136 * 305.00461 * 8 6 5 36 36 H 0.96699 * 114.00163 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.67973 * 67.41844 * 10 6 5 38 38 H 1.08997 * 109.68337 * 187.97263 * 10 6 5 39 39 H 1.07997 * 119.75055 * 359.97438 * 16 15 12 40 40 H 1.08003 * 119.87424 * 180.25348 * 17 16 15 41 41 H 1.08004 * 120.12924 * 179.70732 * 18 17 16 42 42 H 0.97000 * 119.99391 * 180.02562 * 23 22 20 43 43 H 1.07994 * 120.12677 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0463 -0.7334 1.2432 5 8 3.4636 -0.8910 1.1419 6 6 3.8860 -1.6894 0.0339 7 1 3.4218 -2.6736 0.0963 8 6 5.4083 -1.8396 0.0630 9 8 5.7922 -2.5751 1.2264 10 6 3.4639 -1.0050 -1.2713 11 7 2.0256 -0.7039 -1.1933 12 16 0.9953 -1.1438 -2.4130 13 8 1.6830 -2.1162 -3.1881 14 8 -0.2663 -1.3849 -1.8050 15 6 0.7861 0.2636 -3.4522 16 6 -0.2371 1.1641 -3.1975 17 6 -0.4100 2.2787 -4.0033 18 6 0.4274 2.4972 -5.0735 19 6 1.4656 1.5872 -5.3447 20 6 2.3324 1.8016 -6.4410 21 1 3.3569 1.4629 -6.3938 22 6 1.8629 2.4527 -7.5874 23 7 0.5777 2.6227 -7.7630 24 14 3.0713 3.0792 -8.8667 25 1 3.8627 1.9411 -9.3993 26 1 2.3262 3.7258 -9.9767 27 1 3.9857 4.0682 -8.2414 28 6 1.6352 0.4620 -4.5165 29 1 -0.3634 0.6457 0.7994 30 1 -0.3634 0.3694 -0.9589 31 1 -0.3634 -1.0152 0.1595 32 1 1.5748 -1.7138 1.3096 33 1 1.8072 -0.1532 2.1345 34 1 5.7380 -2.3723 -0.8289 35 1 5.8704 -0.8526 0.0883 36 1 6.7463 -2.7084 1.3105 37 1 4.0262 -0.0800 -1.3993 38 1 3.6546 -1.6706 -2.1132 39 1 -0.9018 0.9979 -2.3627 40 1 -1.2078 2.9758 -3.7933 41 1 0.2880 3.3638 -5.7028 42 1 0.2523 3.0737 -8.5577 43 1 2.4290 -0.2427 -4.7153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619491315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:16 Heat of formation + Delta-G solvation = -130.234159 kcal Electronic energy + Delta-G solvation = -28727.938116 eV Core-core repulsion = 24672.696500 eV Total energy + Delta-G solvation = -4055.241616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.67368 -37.72828 -37.24464 -36.72894 -35.47924 -34.99853 -33.83730 -32.85264 -30.14101 -29.89610 -29.31385 -26.32781 -25.49054 -24.94326 -22.37044 -21.91713 -21.09904 -21.06059 -18.75424 -17.90721 -17.58854 -17.03642 -16.76800 -16.13999 -15.97931 -15.34919 -15.11429 -15.06309 -14.80753 -14.62163 -14.43897 -13.93551 -13.54627 -13.40990 -13.14654 -12.86182 -12.70126 -12.49048 -12.09776 -11.94787 -11.77572 -11.57470 -11.43105 -11.38887 -11.31626 -11.19380 -11.09958 -10.90250 -10.85075 -10.60705 -10.49052 -10.18996 -9.96525 -9.75425 -9.61190 -9.37534 -8.73138 -8.09191 -7.69612 -6.91388 -4.58319 0.84777 2.12134 2.59320 2.98673 3.00710 3.03921 3.27817 3.57309 3.82378 3.91625 4.20187 4.39105 4.67519 4.69436 4.74037 4.91901 4.98676 5.11045 5.15225 5.24444 5.31626 5.36110 5.43147 5.53132 5.59193 5.71113 5.82038 5.91724 5.99614 6.10504 6.21398 6.52539 6.55748 6.62466 6.70479 6.85603 7.01891 7.06415 7.16742 7.30245 7.42184 7.63939 7.76452 7.88397 8.35135 8.63651 8.68096 10.06207 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.003624 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.753227 B = 7725.416466 C = 8844.691203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.120 3.880 3 H 0.084 0.916 4 C 0.056 3.944 5 O -0.368 6.368 6 C 0.081 3.919 7 H 0.070 0.930 8 C 0.085 3.915 9 O -0.566 6.566 10 C 0.091 3.909 11 N -0.999 5.999 12 S 2.685 3.315 13 O -0.970 6.970 14 O -0.966 6.966 15 C -0.633 4.633 16 C -0.145 4.145 17 C -0.122 4.122 18 C -0.109 4.109 19 C 0.095 3.905 20 C -0.467 4.467 21 H 0.081 0.919 22 C 0.075 3.925 23 N -0.801 5.801 24 Si 0.913 3.087 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.263 1.263 28 C -0.121 4.121 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.379 0.621 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.284 0.716 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -3.181 12.924 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.014 3.986 3 H 0.102 0.898 4 C -0.022 4.022 5 O -0.287 6.287 6 C 0.022 3.978 7 H 0.088 0.912 8 C 0.006 3.994 9 O -0.371 6.371 10 C -0.035 4.035 11 N -0.836 5.836 12 S 2.784 3.216 13 O -0.961 6.961 14 O -0.956 6.956 15 C -0.725 4.725 16 C -0.166 4.166 17 C -0.141 4.141 18 C -0.129 4.129 19 C 0.092 3.908 20 C -0.497 4.497 21 H 0.100 0.900 22 C -0.143 4.143 23 N -0.426 5.426 24 Si 0.738 3.262 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.188 1.188 28 C -0.142 4.142 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.226 0.774 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.847 -3.870 12.873 14.289 hybrid contribution 0.883 1.059 -1.368 1.942 sum 5.730 -2.810 11.505 13.157 Atomic orbital electron populations 1.22779 0.91909 1.05024 1.04479 1.21712 0.95555 0.96565 0.84778 0.89849 1.23038 0.81446 1.00223 0.97507 1.87968 1.21807 1.71577 1.47298 1.22404 0.94182 0.94611 0.86641 0.91181 1.22113 0.93022 0.96024 0.88239 1.86522 1.28459 1.77074 1.45085 1.21982 0.81151 1.01761 0.98572 1.57955 1.18293 1.74224 1.33129 1.01936 0.72776 0.74653 0.72263 1.93495 1.74745 1.58172 1.69685 1.93612 1.41110 1.85317 1.75585 1.29780 1.07771 1.20741 1.14234 1.20202 0.98423 0.96428 1.01581 1.20826 0.99367 0.97318 0.96635 1.21578 0.96655 0.99191 0.95437 1.17671 0.92193 0.89380 0.91580 1.19527 0.98417 1.33430 0.98308 0.90041 1.25897 0.95625 0.93509 0.99234 1.69749 1.14003 1.31755 1.27141 0.86276 0.80767 0.79884 0.79313 1.18850 1.20246 1.18768 1.20801 0.99416 0.97540 0.96453 0.91534 0.89581 0.89262 0.92518 0.87734 0.91533 0.92305 0.77404 0.90143 0.87425 0.87128 0.88234 0.86146 0.90532 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 7.58 37.16 0.28 -2.18 16 2 C 0.12 1.58 3.71 -67.43 -0.25 1.33 16 3 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 4 C 0.06 0.66 6.29 37.31 0.23 0.90 16 5 O -0.37 -4.93 10.35 -39.97 -0.41 -5.34 16 6 C 0.08 1.01 3.06 -26.57 -0.08 0.93 16 7 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 8 C 0.08 0.83 6.71 37.16 0.25 1.08 16 9 O -0.57 -5.81 13.63 -39.97 -0.54 -6.35 16 10 C 0.09 1.21 6.02 -3.53 -0.02 1.19 16 11 N -1.00 -15.14 3.34 -106.03 -0.35 -15.50 16 12 S 2.68 50.15 5.31 -107.50 -0.57 49.58 16 13 O -0.97 -20.18 15.75 -57.17 -0.90 -21.08 16 14 O -0.97 -18.57 12.53 -57.17 -0.72 -19.29 16 15 C -0.63 -13.61 5.96 -39.66 -0.24 -13.85 16 16 C -0.15 -3.06 8.98 -39.29 -0.35 -3.42 16 17 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 18 C -0.11 -2.66 8.65 -38.88 -0.34 -3.00 16 19 C 0.10 2.42 5.51 -106.83 -0.59 1.84 16 20 C -0.47 -11.85 9.04 -37.74 -0.34 -12.19 16 21 H 0.08 1.96 7.88 -52.48 -0.41 1.55 16 22 C 0.07 1.81 5.18 -17.34 -0.09 1.72 16 23 N -0.80 -20.02 11.16 55.55 0.62 -19.40 16 24 Si 0.91 17.98 29.58 -169.99 -5.03 12.95 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 28 C -0.12 -2.86 9.26 -38.87 -0.36 -3.22 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.32 3.08 -51.93 -0.16 1.17 16 31 H 0.09 1.26 6.73 -51.93 -0.35 0.91 16 32 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.38 1.94 9.12 45.56 0.42 2.36 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 1.42 6.82 -51.93 -0.35 1.06 16 39 H 0.11 2.06 5.51 -52.49 -0.29 1.77 16 40 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 41 H 0.12 2.99 6.50 -52.48 -0.34 2.65 16 42 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 43 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -31.63 353.60 -9.70 -41.32 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.83 Total: 9.70 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: -2.29 Total: -31.94 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.27 Total: -34.89 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -2.58 Total: -52.06 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 50.15 SS G_CDS: -0.57 Total: 49.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.63 -9.70 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.911 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds