Wall clock time and date at job start Sat Apr 11 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.70847 * 2 1 4 4 C 1.53296 * 109.68265 * 120.53670 * 2 1 3 5 5 O 1.42962 * 109.22009 * 172.02866 * 4 2 1 6 6 C 1.42960 * 114.16720 * 297.41314 * 5 4 2 7 7 H 1.08991 * 109.51655 * 302.61101 * 6 5 4 8 8 C 1.53004 * 109.51257 * 182.50742 * 6 5 4 9 9 O 1.42894 * 109.47066 * 65.00356 * 8 6 5 10 10 C 1.53301 * 109.22035 * 62.58694 * 6 5 4 11 11 N 1.47149 * 109.68410 * 239.46397 * 2 1 3 12 12 S 1.65607 * 120.98247 * 9.76396 * 11 2 1 13 13 O 1.42099 * 106.40207 * 196.79335 * 12 11 2 14 14 O 1.42105 * 106.39645 * 329.71136 * 12 11 2 15 15 C 1.76200 * 107.21991 * 83.25186 * 12 11 2 16 16 C 1.38661 * 119.87155 * 269.73127 * 15 12 11 17 17 C 1.38616 * 120.49422 * 179.72310 * 16 15 12 18 18 C 1.37634 * 120.24974 * 0.55010 * 17 16 15 19 19 C 1.40694 * 119.74653 * 359.72057 * 18 17 16 20 20 C 1.41394 * 120.24727 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00109 * 149.17241 * 20 19 18 22 22 C 1.39949 * 120.00333 * 329.18016 * 20 19 18 23 23 N 1.30823 * 119.99464 * 346.23461 * 22 20 19 24 24 Si 1.86797 * 120.00138 * 166.22903 * 22 20 19 25 25 H 1.48502 * 109.46924 * 60.00279 * 24 22 20 26 26 H 1.48505 * 109.46824 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47363 * 300.00266 * 24 22 20 28 28 C 1.37594 * 119.87442 * 89.99914 * 15 12 11 29 29 H 1.08995 * 109.47403 * 308.93223 * 1 2 3 30 30 H 1.08997 * 109.47522 * 68.93362 * 1 2 3 31 31 H 1.09005 * 109.47191 * 188.92899 * 1 2 3 32 32 H 1.08990 * 109.51392 * 52.10267 * 4 2 1 33 33 H 1.09002 * 109.54938 * 291.97590 * 4 2 1 34 34 H 1.08999 * 109.46721 * 185.00516 * 8 6 5 35 35 H 1.09000 * 109.47136 * 305.00461 * 8 6 5 36 36 H 0.96699 * 114.00163 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.67973 * 67.41844 * 10 6 5 38 38 H 1.08997 * 109.68337 * 187.97263 * 10 6 5 39 39 H 1.07997 * 119.75055 * 359.97438 * 16 15 12 40 40 H 1.08003 * 119.87424 * 180.25348 * 17 16 15 41 41 H 1.08004 * 120.12924 * 179.70732 * 18 17 16 42 42 H 0.97000 * 119.99391 * 180.02562 * 23 22 20 43 43 H 1.07994 * 120.12677 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0463 -0.7334 1.2432 5 8 3.4636 -0.8910 1.1419 6 6 3.8860 -1.6894 0.0339 7 1 3.4218 -2.6736 0.0963 8 6 5.4083 -1.8396 0.0630 9 8 5.7922 -2.5751 1.2264 10 6 3.4639 -1.0050 -1.2713 11 7 2.0256 -0.7039 -1.1933 12 16 0.9953 -1.1438 -2.4130 13 8 1.6830 -2.1162 -3.1881 14 8 -0.2663 -1.3849 -1.8050 15 6 0.7861 0.2636 -3.4522 16 6 -0.2371 1.1641 -3.1975 17 6 -0.4100 2.2787 -4.0033 18 6 0.4274 2.4972 -5.0735 19 6 1.4656 1.5872 -5.3447 20 6 2.3324 1.8016 -6.4410 21 1 3.3569 1.4629 -6.3938 22 6 1.8629 2.4527 -7.5874 23 7 0.5777 2.6227 -7.7630 24 14 3.0713 3.0792 -8.8667 25 1 3.8627 1.9411 -9.3993 26 1 2.3262 3.7258 -9.9767 27 1 3.9857 4.0682 -8.2414 28 6 1.6352 0.4620 -4.5165 29 1 -0.3634 0.6457 0.7994 30 1 -0.3634 0.3694 -0.9589 31 1 -0.3634 -1.0152 0.1595 32 1 1.5748 -1.7138 1.3096 33 1 1.8072 -0.1532 2.1345 34 1 5.7380 -2.3723 -0.8289 35 1 5.8704 -0.8526 0.0883 36 1 6.7463 -2.7084 1.3105 37 1 4.0262 -0.0800 -1.3993 38 1 3.6546 -1.6706 -2.1132 39 1 -0.9018 0.9979 -2.3627 40 1 -1.2078 2.9758 -3.7933 41 1 0.2880 3.3638 -5.7028 42 1 0.2523 3.0737 -8.5577 43 1 2.4290 -0.2427 -4.7153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:15 Heat of formation + Delta-G solvation = -154.006260 kcal Electronic energy + Delta-G solvation = -28728.968951 eV Core-core repulsion = 24672.696500 eV Total energy + Delta-G solvation = -4056.272451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.67329 -39.49776 -38.67139 -37.61256 -37.00128 -36.11662 -35.63778 -33.85674 -31.94384 -31.65880 -30.31890 -27.51845 -27.13907 -25.90183 -23.68326 -23.36449 -22.85573 -22.10010 -20.32015 -19.43020 -18.49263 -18.14922 -17.98219 -17.72239 -17.21460 -16.90378 -16.59811 -16.18759 -16.01728 -15.96712 -15.53832 -15.26934 -15.04711 -14.80642 -14.40240 -14.15425 -13.87869 -13.85202 -13.63091 -13.30108 -13.20135 -13.11316 -13.04604 -12.90077 -12.80315 -12.60380 -12.42498 -12.16361 -12.14641 -11.91683 -11.56814 -11.49508 -11.29429 -11.14355 -11.06137 -10.91174 -9.95396 -9.78896 -9.52572 -8.71058 -6.48404 -0.63275 0.36466 0.81837 1.36983 1.45746 1.49076 1.91364 2.17964 2.55774 2.68659 2.71449 3.10974 3.39162 3.44059 3.59711 3.72828 3.99480 4.04154 4.15433 4.24728 4.25768 4.30592 4.33745 4.56687 4.58190 4.60977 4.65905 4.77097 4.81695 4.84671 4.91625 4.97670 5.01107 5.11475 5.18807 5.37941 5.49089 5.49980 5.56660 5.84847 5.92059 6.07646 6.12540 6.49905 6.79360 6.82551 6.94317 8.28735 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.003624 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.753227 B = 7725.416466 C = 8844.691203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.115 3.885 3 H 0.093 0.907 4 C 0.056 3.944 5 O -0.378 6.378 6 C 0.080 3.920 7 H 0.061 0.939 8 C 0.086 3.914 9 O -0.587 6.587 10 C 0.085 3.915 11 N -0.994 5.994 12 S 2.708 3.292 13 O -0.994 6.994 14 O -0.970 6.970 15 C -0.642 4.642 16 C -0.142 4.142 17 C -0.125 4.125 18 C -0.131 4.131 19 C 0.066 3.934 20 C -0.504 4.504 21 H 0.081 0.919 22 C 0.035 3.965 23 N -0.834 5.834 24 Si 0.985 3.015 25 H -0.261 1.261 26 H -0.268 1.268 27 H -0.257 1.257 28 C -0.141 4.141 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.400 0.600 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.140 0.860 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.290 0.710 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -2.913 14.500 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.010 3.990 3 H 0.111 0.889 4 C -0.022 4.022 5 O -0.297 6.297 6 C 0.020 3.980 7 H 0.079 0.921 8 C 0.007 3.993 9 O -0.396 6.396 10 C -0.041 4.041 11 N -0.834 5.834 12 S 2.804 3.196 13 O -0.985 6.985 14 O -0.960 6.960 15 C -0.730 4.730 16 C -0.162 4.162 17 C -0.144 4.144 18 C -0.150 4.150 19 C 0.063 3.937 20 C -0.534 4.534 21 H 0.099 0.901 22 C -0.179 4.179 23 N -0.461 5.461 24 Si 0.805 3.195 25 H -0.185 1.185 26 H -0.193 1.193 27 H -0.181 1.181 28 C -0.162 4.162 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.152 0.848 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.157 0.843 40 H 0.147 0.853 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.489 -3.585 14.437 15.856 hybrid contribution 0.636 0.906 -1.658 1.993 sum 6.125 -2.679 12.780 14.423 Atomic orbital electron populations 1.22755 0.91906 1.05182 1.04508 1.21972 0.95632 0.97070 0.84311 0.88899 1.23182 0.80779 1.00546 0.97707 1.87966 1.22585 1.71626 1.47503 1.22471 0.96015 0.93785 0.85713 0.92131 1.22129 0.91199 0.96966 0.88974 1.86453 1.30719 1.77140 1.45260 1.22195 0.79985 1.02543 0.99337 1.57741 1.18853 1.74332 1.32451 1.01290 0.72819 0.73453 0.72040 1.93458 1.75296 1.58730 1.70978 1.93616 1.41990 1.85120 1.75292 1.30313 1.06941 1.21698 1.14090 1.20634 0.98193 0.95604 1.01774 1.21178 0.99383 0.98155 0.95654 1.21584 0.97696 0.99152 0.96616 1.18024 0.93019 0.90321 0.92380 1.19810 0.98708 1.35424 0.99442 0.90073 1.26743 0.97302 0.92993 1.00881 1.69805 1.15653 1.32466 1.28136 0.85205 0.78347 0.79287 0.76633 1.18519 1.19270 1.18091 1.20883 1.00382 0.97474 0.97455 0.88175 0.91672 0.90113 0.92582 0.84818 0.89622 0.91289 0.74929 0.88934 0.87716 0.84291 0.85283 0.87413 0.89919 0.87250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.48 7.58 71.98 0.55 -3.94 16 2 C 0.12 2.77 3.71 44.97 0.17 2.94 16 3 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 4 C 0.06 1.17 6.29 72.08 0.45 1.62 16 5 O -0.38 -9.25 10.35 -144.45 -1.50 -10.74 16 6 C 0.08 1.86 3.06 30.70 0.09 1.95 16 7 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 8 C 0.09 1.50 6.71 71.98 0.48 1.98 16 9 O -0.59 -10.82 13.63 -144.45 -1.97 -12.79 16 10 C 0.08 2.15 6.02 86.36 0.52 2.67 16 11 N -0.99 -28.88 3.34 -489.36 -1.63 -30.51 16 12 S 2.71 99.74 5.31 -56.49 -0.30 99.44 16 13 O -0.99 -41.52 15.75 -128.00 -2.02 -43.53 16 14 O -0.97 -36.22 12.53 -128.00 -1.60 -37.82 16 15 C -0.64 -27.61 5.96 22.22 0.13 -27.48 16 16 C -0.14 -5.85 8.98 22.46 0.20 -5.65 16 17 C -0.12 -5.42 10.02 22.22 0.22 -5.20 16 18 C -0.13 -6.56 8.65 22.73 0.20 -6.37 16 19 C 0.07 3.46 5.51 -21.29 -0.12 3.35 16 20 C -0.50 -26.53 9.04 23.46 0.21 -26.32 16 21 H 0.08 4.08 7.88 -2.91 -0.02 4.05 16 22 C 0.04 1.73 5.18 85.26 0.44 2.17 16 23 N -0.83 -42.80 11.16 21.83 0.24 -42.55 16 24 Si 0.98 37.20 29.58 68.60 2.03 39.23 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 26 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 27 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 28 C -0.14 -6.87 9.26 22.73 0.21 -6.66 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.86 3.08 -2.39 -0.01 1.85 16 31 H 0.08 2.10 6.73 -2.38 -0.02 2.08 16 32 H 0.06 1.18 8.09 -2.39 -0.02 1.17 16 33 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.40 3.22 9.12 -74.06 -0.68 2.54 16 37 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.10 2.71 6.82 -2.39 -0.02 2.69 16 39 H 0.14 4.90 5.51 -2.91 -0.02 4.88 16 40 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.11 5.58 6.50 -2.91 -0.02 5.56 16 42 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 43 H 0.11 5.18 7.60 -2.91 -0.02 5.16 16 Total: -1.00 -69.20 353.60 -2.60 -71.80 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.38 Total: 32.41 kcal Atomic # 6 Polarization: -68.69 SS G_CDS: 3.76 Total: -64.93 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -1.39 Total: -73.07 kcal Atomic # 8 Polarization: -97.80 SS G_CDS: -7.08 Total: -104.88 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 99.74 SS G_CDS: -0.30 Total: 99.44 kcal Total: -69.20 -2.60 -71.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.206 kcal (2) G-P(sol) polarization free energy of solvation -69.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds