Wall clock time and date at job start Sat Apr 11 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.68195 * 2 1 4 4 C 1.53291 * 109.68606 * 239.43784 * 2 1 3 5 5 O 1.42957 * 109.27144 * 188.00122 * 4 2 1 6 6 C 1.42964 * 114.16825 * 62.50025 * 5 4 2 7 7 H 1.09001 * 109.51122 * 57.45183 * 6 5 4 8 8 C 1.52996 * 109.51285 * 177.55367 * 6 5 4 9 9 O 1.42899 * 109.47130 * 294.89727 * 8 6 5 10 10 C 1.53300 * 109.26061 * 297.50329 * 6 5 4 11 11 N 1.47154 * 108.38607 * 52.28056 * 10 6 5 12 12 S 1.65599 * 120.98256 * 129.48670 * 11 10 6 13 13 O 1.42110 * 106.39810 * 211.47842 * 12 11 10 14 14 O 1.42098 * 106.40323 * 344.39548 * 12 11 10 15 15 C 1.76194 * 107.22016 * 97.93693 * 12 11 10 16 16 C 1.38659 * 119.87646 * 89.99670 * 15 12 11 17 17 C 1.38612 * 120.50194 * 179.97438 * 16 15 12 18 18 C 1.37635 * 120.25014 * 0.02690 * 17 16 15 19 19 C 1.40700 * 119.74174 * 359.97438 * 18 17 16 20 20 C 1.41398 * 120.24107 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99482 * 205.63985 * 20 19 18 22 22 C 1.39940 * 120.00292 * 25.63419 * 20 19 18 23 23 N 1.30819 * 119.99985 * 17.23657 * 22 20 19 24 24 Si 1.86804 * 119.99950 * 197.23612 * 22 20 19 25 25 H 1.48500 * 109.47259 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46955 * 120.00134 * 24 22 20 27 27 H 1.48493 * 109.47162 * 240.00072 * 24 22 20 28 28 C 1.37599 * 119.87757 * 269.72249 * 15 12 11 29 29 H 1.09001 * 109.47303 * 298.12285 * 1 2 3 30 30 H 1.09005 * 109.46801 * 58.11867 * 1 2 3 31 31 H 1.09000 * 109.47097 * 178.11692 * 1 2 3 32 32 H 1.09005 * 109.51595 * 307.90776 * 4 2 1 33 33 H 1.09001 * 109.51389 * 68.00109 * 4 2 1 34 34 H 1.08996 * 109.47054 * 174.89185 * 8 6 5 35 35 H 1.08998 * 109.47024 * 54.89970 * 8 6 5 36 36 H 0.96700 * 113.99755 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.67748 * 171.99812 * 10 6 5 38 38 H 1.08995 * 109.68253 * 292.51308 * 10 6 5 39 39 H 1.08003 * 119.74760 * 359.97438 * 16 15 12 40 40 H 1.08002 * 119.87190 * 180.02562 * 17 16 15 41 41 H 1.07994 * 120.12884 * 180.02562 * 18 17 16 42 42 H 0.97004 * 120.00354 * 179.97438 * 23 22 20 43 43 H 1.08002 * 120.12090 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0464 -0.7339 -1.2428 5 8 3.4635 -0.8926 -1.1422 6 6 3.8860 -1.6897 -0.0331 7 1 3.4217 -2.6739 -0.0943 8 6 5.4083 -1.8399 -0.0621 9 8 5.7918 -2.5791 -1.2234 10 6 3.4638 -1.0046 1.2718 11 7 2.0255 -0.7036 1.1937 12 16 0.9952 -1.1429 2.4134 13 8 -0.2590 -1.4118 1.8018 14 8 1.6934 -2.0938 3.2055 15 6 0.7582 0.2750 3.4321 16 6 -0.2739 1.1590 3.1563 17 6 -0.4725 2.2783 3.9494 18 6 0.3553 2.5243 5.0212 19 6 1.4058 1.6342 5.3106 20 6 2.2628 1.8770 6.4087 21 1 3.2676 1.4810 6.4073 22 6 1.8091 2.6304 7.4973 23 7 0.5268 2.8240 7.6697 24 14 3.0344 3.3596 8.7040 25 1 4.4135 2.9986 8.2881 26 1 2.8937 4.8378 8.7198 27 1 2.7702 2.8227 10.0630 28 6 1.5944 0.4980 4.5019 29 1 -0.3634 0.4844 0.9063 30 1 -0.3633 0.5428 -0.8727 31 1 -0.3633 -1.0271 -0.0338 32 1 1.5747 -1.7144 -1.3090 33 1 1.8067 -0.1539 -2.1340 34 1 5.7381 -2.3699 0.8313 35 1 5.8703 -0.8531 -0.0905 36 1 6.7459 -2.7126 -1.3072 37 1 3.6544 -1.6700 2.1139 38 1 4.0267 -0.0801 1.3998 39 1 -0.9279 0.9740 2.3170 40 1 -1.2798 2.9599 3.7255 41 1 0.1985 3.3967 5.6381 42 1 0.2123 3.3459 8.4245 43 1 2.3952 -0.1939 4.7173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619491316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:20 Heat of formation + Delta-G solvation = -130.060326 kcal Electronic energy + Delta-G solvation = -28729.996517 eV Core-core repulsion = 24674.762439 eV Total energy + Delta-G solvation = -4055.234078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.66586 -37.71522 -37.22408 -36.72235 -35.46713 -34.99476 -33.88723 -32.84783 -30.15404 -29.86389 -29.30708 -26.32495 -25.50664 -24.93834 -22.36142 -21.90632 -21.08831 -21.04912 -18.76545 -17.90601 -17.58523 -17.01523 -16.77572 -16.13452 -15.97058 -15.36600 -15.10575 -15.05802 -14.82047 -14.60231 -14.44616 -13.93187 -13.53691 -13.41196 -13.14128 -12.85757 -12.72661 -12.46724 -12.08976 -11.92969 -11.75518 -11.57736 -11.46877 -11.41348 -11.33052 -11.20419 -11.09328 -10.90811 -10.79139 -10.53889 -10.49202 -10.19093 -9.93795 -9.74296 -9.60131 -9.39480 -8.72630 -8.07707 -7.73980 -6.95675 -4.57996 0.86232 2.13840 2.58204 2.97757 3.00459 3.03781 3.28374 3.57645 3.80017 3.91836 4.20344 4.36367 4.67470 4.70163 4.75103 4.92534 4.99929 5.11715 5.16576 5.25137 5.33064 5.37498 5.43613 5.53603 5.61285 5.71130 5.82250 5.92439 6.00828 6.10645 6.25738 6.54915 6.57943 6.65135 6.72796 6.87191 7.00430 7.06894 7.17075 7.32228 7.42250 7.67039 7.75960 7.89423 8.35569 8.62842 8.67228 10.00327 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.003618 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.707537 B = 7736.272972 C = 8836.890104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.121 3.879 3 H 0.083 0.917 4 C 0.056 3.944 5 O -0.368 6.368 6 C 0.081 3.919 7 H 0.070 0.930 8 C 0.085 3.915 9 O -0.566 6.566 10 C 0.091 3.909 11 N -0.999 5.999 12 S 2.684 3.316 13 O -0.966 6.966 14 O -0.971 6.971 15 C -0.630 4.630 16 C -0.151 4.151 17 C -0.120 4.120 18 C -0.116 4.116 19 C 0.093 3.907 20 C -0.461 4.461 21 H 0.083 0.917 22 C 0.075 3.925 23 N -0.794 5.794 24 Si 0.912 3.088 25 H -0.259 1.259 26 H -0.271 1.271 27 H -0.273 1.273 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.379 0.621 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.283 0.717 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -3.366 -12.689 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.015 3.985 3 H 0.101 0.899 4 C -0.022 4.022 5 O -0.286 6.286 6 C 0.022 3.978 7 H 0.088 0.912 8 C 0.006 3.994 9 O -0.371 6.371 10 C -0.035 4.035 11 N -0.836 5.836 12 S 2.784 3.216 13 O -0.956 6.956 14 O -0.962 6.962 15 C -0.722 4.722 16 C -0.172 4.172 17 C -0.140 4.140 18 C -0.136 4.136 19 C 0.089 3.911 20 C -0.491 4.491 21 H 0.101 0.899 22 C -0.143 4.143 23 N -0.419 5.419 24 Si 0.736 3.264 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.147 4.147 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.226 0.774 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.982 -4.048 -12.634 14.171 hybrid contribution 0.870 1.156 1.315 1.955 sum 5.851 -2.893 -11.319 13.066 Atomic orbital electron populations 1.22889 0.92016 1.06259 1.03886 1.21695 0.95550 0.96543 0.84746 0.89915 1.23024 0.81437 1.00245 0.97495 1.87967 1.21825 1.71677 1.47180 1.22403 0.94174 0.94625 0.86639 0.91194 1.22110 0.93032 0.95975 0.88279 1.86524 1.28458 1.76873 1.45284 1.21978 0.81171 1.01767 0.98559 1.57943 1.18260 1.74233 1.33153 1.01931 0.72778 0.74696 0.72224 1.93583 1.41843 1.84938 1.75263 1.93493 1.74343 1.59436 1.68888 1.29751 1.07748 1.20857 1.13856 1.20194 0.98532 0.96761 1.01694 1.20818 0.99331 0.97239 0.96597 1.21630 0.96644 0.99560 0.95754 1.17683 0.92148 0.89485 0.91764 1.19630 1.00120 1.28754 1.00559 0.89907 1.25935 0.95646 0.94152 0.98599 1.69782 1.14538 1.29979 1.27598 0.86197 0.81431 0.79242 0.79553 1.18244 1.19594 1.19803 1.20742 0.99704 0.97615 0.96619 0.90019 0.91431 0.88103 0.92512 0.87750 0.91538 0.92306 0.77408 0.87414 0.90162 0.87120 0.88314 0.85811 0.90562 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 7.55 37.16 0.28 -2.30 16 2 C 0.12 1.60 3.71 -67.42 -0.25 1.35 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.06 0.67 6.28 37.31 0.23 0.90 16 5 O -0.37 -4.94 10.35 -39.87 -0.41 -5.36 16 6 C 0.08 1.01 3.06 -26.58 -0.08 0.93 16 7 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 8 C 0.08 0.83 6.71 37.16 0.25 1.08 16 9 O -0.57 -5.82 13.63 -39.87 -0.54 -6.36 16 10 C 0.09 1.22 6.02 -3.53 -0.02 1.19 16 11 N -1.00 -15.21 3.34 -106.03 -0.35 -15.56 16 12 S 2.68 50.30 5.31 -107.50 -0.57 49.73 16 13 O -0.97 -18.60 12.51 -57.17 -0.72 -19.32 16 14 O -0.97 -20.22 15.72 -57.17 -0.90 -21.12 16 15 C -0.63 -13.61 5.96 -39.66 -0.24 -13.84 16 16 C -0.15 -3.20 8.88 -39.29 -0.35 -3.54 16 17 C -0.12 -2.65 10.02 -39.66 -0.40 -3.05 16 18 C -0.12 -2.85 8.69 -38.87 -0.34 -3.19 16 19 C 0.09 2.37 5.56 -106.82 -0.59 1.77 16 20 C -0.46 -11.68 9.05 -37.74 -0.34 -12.03 16 21 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 22 C 0.07 1.79 5.14 -17.35 -0.09 1.70 16 23 N -0.79 -19.64 11.00 55.55 0.61 -19.03 16 24 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 25 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 27 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 28 C -0.13 -2.98 9.26 -38.87 -0.36 -3.34 16 29 H 0.08 1.24 3.50 -51.93 -0.18 1.06 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.46 6.22 -51.93 -0.32 1.14 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.38 1.95 9.12 45.56 0.42 2.36 16 37 H 0.11 1.42 6.80 -51.93 -0.35 1.07 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.11 2.08 5.37 -52.48 -0.28 1.79 16 40 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.12 3.09 6.22 -52.49 -0.33 2.76 16 42 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 43 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -31.55 352.89 -9.69 -41.24 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -4.80 Total: 10.04 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: -2.29 Total: -32.37 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.26 Total: -34.59 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -2.57 Total: -52.15 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Atomic # 16 Polarization: 50.30 SS G_CDS: -0.57 Total: 49.73 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.55 -9.69 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.816 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds