Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.68195 * 2 1 4 4 C 1.53291 * 109.68606 * 239.43784 * 2 1 3 5 5 O 1.42957 * 109.27144 * 188.00122 * 4 2 1 6 6 C 1.42964 * 114.16825 * 62.50025 * 5 4 2 7 7 H 1.09001 * 109.51122 * 57.45183 * 6 5 4 8 8 C 1.52996 * 109.51285 * 177.55367 * 6 5 4 9 9 O 1.42899 * 109.47130 * 294.89727 * 8 6 5 10 10 C 1.53300 * 109.26061 * 297.50329 * 6 5 4 11 11 N 1.47154 * 108.38607 * 52.28056 * 10 6 5 12 12 S 1.65599 * 120.98256 * 129.48670 * 11 10 6 13 13 O 1.42110 * 106.39810 * 211.47842 * 12 11 10 14 14 O 1.42098 * 106.40323 * 344.39548 * 12 11 10 15 15 C 1.76194 * 107.22016 * 97.93693 * 12 11 10 16 16 C 1.38659 * 119.87646 * 89.99670 * 15 12 11 17 17 C 1.38612 * 120.50194 * 179.97438 * 16 15 12 18 18 C 1.37635 * 120.25014 * 0.02690 * 17 16 15 19 19 C 1.40700 * 119.74174 * 359.97438 * 18 17 16 20 20 C 1.41398 * 120.24107 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99482 * 205.63985 * 20 19 18 22 22 C 1.39940 * 120.00292 * 25.63419 * 20 19 18 23 23 N 1.30819 * 119.99985 * 17.23657 * 22 20 19 24 24 Si 1.86804 * 119.99950 * 197.23612 * 22 20 19 25 25 H 1.48500 * 109.47259 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46955 * 120.00134 * 24 22 20 27 27 H 1.48493 * 109.47162 * 240.00072 * 24 22 20 28 28 C 1.37599 * 119.87757 * 269.72249 * 15 12 11 29 29 H 1.09001 * 109.47303 * 298.12285 * 1 2 3 30 30 H 1.09005 * 109.46801 * 58.11867 * 1 2 3 31 31 H 1.09000 * 109.47097 * 178.11692 * 1 2 3 32 32 H 1.09005 * 109.51595 * 307.90776 * 4 2 1 33 33 H 1.09001 * 109.51389 * 68.00109 * 4 2 1 34 34 H 1.08996 * 109.47054 * 174.89185 * 8 6 5 35 35 H 1.08998 * 109.47024 * 54.89970 * 8 6 5 36 36 H 0.96700 * 113.99755 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.67748 * 171.99812 * 10 6 5 38 38 H 1.08995 * 109.68253 * 292.51308 * 10 6 5 39 39 H 1.08003 * 119.74760 * 359.97438 * 16 15 12 40 40 H 1.08002 * 119.87190 * 180.02562 * 17 16 15 41 41 H 1.07994 * 120.12884 * 180.02562 * 18 17 16 42 42 H 0.97004 * 120.00354 * 179.97438 * 23 22 20 43 43 H 1.08002 * 120.12090 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0464 -0.7339 -1.2428 5 8 3.4635 -0.8926 -1.1422 6 6 3.8860 -1.6897 -0.0331 7 1 3.4217 -2.6739 -0.0943 8 6 5.4083 -1.8399 -0.0621 9 8 5.7918 -2.5791 -1.2234 10 6 3.4638 -1.0046 1.2718 11 7 2.0255 -0.7036 1.1937 12 16 0.9952 -1.1429 2.4134 13 8 -0.2590 -1.4118 1.8018 14 8 1.6934 -2.0938 3.2055 15 6 0.7582 0.2750 3.4321 16 6 -0.2739 1.1590 3.1563 17 6 -0.4725 2.2783 3.9494 18 6 0.3553 2.5243 5.0212 19 6 1.4058 1.6342 5.3106 20 6 2.2628 1.8770 6.4087 21 1 3.2676 1.4810 6.4073 22 6 1.8091 2.6304 7.4973 23 7 0.5268 2.8240 7.6697 24 14 3.0344 3.3596 8.7040 25 1 4.4135 2.9986 8.2881 26 1 2.8937 4.8378 8.7198 27 1 2.7702 2.8227 10.0630 28 6 1.5944 0.4980 4.5019 29 1 -0.3634 0.4844 0.9063 30 1 -0.3633 0.5428 -0.8727 31 1 -0.3633 -1.0271 -0.0338 32 1 1.5747 -1.7144 -1.3090 33 1 1.8067 -0.1539 -2.1340 34 1 5.7381 -2.3699 0.8313 35 1 5.8703 -0.8531 -0.0905 36 1 6.7459 -2.7126 -1.3072 37 1 3.6544 -1.6700 2.1139 38 1 4.0267 -0.0801 1.3998 39 1 -0.9279 0.9740 2.3170 40 1 -1.2798 2.9599 3.7255 41 1 0.1985 3.3967 5.6381 42 1 0.2123 3.3459 8.4245 43 1 2.3952 -0.1939 4.7173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -153.767767 kcal Electronic energy + Delta-G solvation = -28731.024548 eV Core-core repulsion = 24674.762439 eV Total energy + Delta-G solvation = -4056.262110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66970 -39.48926 -38.65255 -37.61160 -36.99343 -36.11832 -35.68254 -33.85731 -31.95743 -31.63054 -30.31852 -27.53749 -27.13617 -25.90277 -23.66880 -23.36884 -22.84522 -22.09587 -20.33871 -19.43106 -18.48776 -18.14083 -17.98882 -17.72576 -17.20428 -16.91113 -16.58985 -16.21019 -16.02216 -15.95682 -15.53822 -15.26871 -15.04977 -14.80882 -14.39927 -14.15794 -13.89967 -13.82883 -13.60339 -13.29872 -13.20589 -13.11911 -13.08784 -12.87562 -12.82789 -12.59352 -12.45828 -12.15817 -12.12001 -11.86150 -11.55026 -11.48964 -11.25010 -11.15968 -11.07953 -10.91245 -9.95314 -9.78456 -9.57089 -8.74418 -6.47568 -0.62345 0.37767 0.81588 1.36720 1.43444 1.52072 1.91373 2.16868 2.53770 2.68264 2.70914 3.11156 3.40012 3.45483 3.60458 3.72889 3.99691 4.04919 4.15994 4.25025 4.26400 4.30715 4.34524 4.56751 4.58624 4.60912 4.66553 4.77664 4.82546 4.85951 4.92100 4.98046 5.01533 5.13145 5.18205 5.38025 5.50593 5.51768 5.58023 5.87046 5.91608 6.08040 6.12658 6.50306 6.78104 6.82327 6.94293 8.24302 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.003618 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.707537 B = 7736.272972 C = 8836.890104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.116 3.884 3 H 0.091 0.909 4 C 0.056 3.944 5 O -0.378 6.378 6 C 0.080 3.920 7 H 0.061 0.939 8 C 0.086 3.914 9 O -0.587 6.587 10 C 0.085 3.915 11 N -0.994 5.994 12 S 2.707 3.293 13 O -0.970 6.970 14 O -0.994 6.994 15 C -0.638 4.638 16 C -0.148 4.148 17 C -0.123 4.123 18 C -0.139 4.139 19 C 0.064 3.936 20 C -0.499 4.499 21 H 0.081 0.919 22 C 0.036 3.964 23 N -0.826 5.826 24 Si 0.985 3.015 25 H -0.256 1.256 26 H -0.261 1.261 27 H -0.267 1.267 28 C -0.147 4.147 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.134 0.866 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.400 0.600 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.292 0.708 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -3.060 -14.249 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.011 3.989 3 H 0.109 0.891 4 C -0.022 4.022 5 O -0.297 6.297 6 C 0.020 3.980 7 H 0.079 0.921 8 C 0.007 3.993 9 O -0.396 6.396 10 C -0.041 4.041 11 N -0.834 5.834 12 S 2.804 3.196 13 O -0.960 6.960 14 O -0.985 6.985 15 C -0.727 4.727 16 C -0.168 4.168 17 C -0.142 4.142 18 C -0.159 4.159 19 C 0.061 3.939 20 C -0.528 4.528 21 H 0.099 0.901 22 C -0.179 4.179 23 N -0.452 5.452 24 Si 0.805 3.195 25 H -0.180 1.180 26 H -0.186 1.186 27 H -0.192 1.192 28 C -0.168 4.168 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.251 0.749 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.641 -3.726 -14.182 15.711 hybrid contribution 0.616 0.987 1.616 1.991 sum 6.257 -2.739 -12.566 14.302 Atomic orbital electron populations 1.22857 0.92001 1.05804 1.04486 1.21953 0.95634 0.97015 0.84316 0.89062 1.23168 0.80779 1.00583 0.97662 1.87966 1.22600 1.71732 1.47387 1.22471 0.96015 0.93808 0.85686 0.92101 1.22125 0.91201 0.96907 0.89030 1.86455 1.30721 1.76934 1.45454 1.22192 0.79990 1.02537 0.99353 1.57732 1.18832 1.74338 1.32468 1.01300 0.72831 0.73485 0.72010 1.93591 1.42726 1.84710 1.74963 1.93456 1.74890 1.59941 1.70202 1.30290 1.06939 1.21831 1.13671 1.20618 0.98317 0.95977 1.01923 1.21169 0.99396 0.98028 0.95654 1.21640 0.97679 0.99577 0.96973 1.18038 0.92940 0.90405 0.92560 1.19891 1.00370 1.30779 1.01728 0.90102 1.26776 0.97394 0.93797 0.99959 1.69824 1.16174 1.30571 1.28618 0.85115 0.78799 0.78599 0.76988 1.17973 1.18593 1.19177 1.20827 1.00680 0.97578 0.97688 0.91922 0.87992 0.89247 0.92527 0.84828 0.89609 0.91311 0.74929 0.87687 0.88995 0.84334 0.85423 0.87004 0.89762 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.71 7.55 71.98 0.54 -4.17 16 2 C 0.12 2.81 3.71 44.96 0.17 2.98 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.06 1.18 6.28 72.08 0.45 1.63 16 5 O -0.38 -9.28 10.35 -144.55 -1.50 -10.78 16 6 C 0.08 1.86 3.06 30.69 0.09 1.96 16 7 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 8 C 0.09 1.50 6.71 71.98 0.48 1.99 16 9 O -0.59 -10.83 13.63 -144.55 -1.97 -12.80 16 10 C 0.08 2.16 6.02 86.36 0.52 2.68 16 11 N -0.99 -29.07 3.34 -489.36 -1.63 -30.71 16 12 S 2.71 100.22 5.31 -56.49 -0.30 99.92 16 13 O -0.97 -36.34 12.51 -128.00 -1.60 -37.94 16 14 O -0.99 -41.63 15.72 -128.00 -2.01 -43.64 16 15 C -0.64 -27.67 5.96 22.22 0.13 -27.53 16 16 C -0.15 -6.16 8.88 22.46 0.20 -5.96 16 17 C -0.12 -5.41 10.02 22.22 0.22 -5.19 16 18 C -0.14 -7.01 8.69 22.73 0.20 -6.81 16 19 C 0.06 3.37 5.56 -21.29 -0.12 3.26 16 20 C -0.50 -26.22 9.05 23.46 0.21 -26.00 16 21 H 0.08 4.09 7.90 -2.91 -0.02 4.07 16 22 C 0.04 1.75 5.14 85.26 0.44 2.19 16 23 N -0.83 -41.89 11.00 21.82 0.24 -41.65 16 24 Si 0.98 36.84 29.59 68.60 2.03 38.87 16 25 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 26 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 27 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 28 C -0.15 -7.19 9.26 22.73 0.21 -6.98 16 29 H 0.06 1.77 3.50 -2.39 -0.01 1.76 16 30 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.09 2.41 6.22 -2.39 -0.01 2.40 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.40 3.22 9.12 -74.06 -0.68 2.55 16 37 H 0.10 2.73 6.80 -2.39 -0.02 2.71 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.14 4.94 5.37 -2.91 -0.02 4.92 16 40 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 41 H 0.11 5.81 6.22 -2.91 -0.02 5.79 16 42 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 43 H 0.11 5.17 7.60 -2.91 -0.02 5.14 16 Total: -1.00 -69.04 352.89 -2.61 -71.65 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.38 Total: 33.05 kcal Atomic # 6 Polarization: -69.72 SS G_CDS: 3.75 Total: -65.97 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.39 Total: -72.36 kcal Atomic # 8 Polarization: -98.08 SS G_CDS: -7.08 Total: -105.16 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 100.22 SS G_CDS: -0.30 Total: 99.92 kcal Total: -69.04 -2.61 -71.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.122 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds