Wall clock time and date at job start Sat Apr 11 2020 06:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.67541 * 2 1 4 4 C 1.53294 * 109.68075 * 120.55524 * 2 1 3 5 5 O 1.42958 * 109.22298 * 67.42197 * 4 2 1 6 6 C 1.42967 * 114.16554 * 62.58198 * 5 4 2 7 7 H 1.08998 * 109.51209 * 57.38962 * 6 5 4 8 8 C 1.53000 * 109.51061 * 177.49232 * 6 5 4 9 9 O 1.42897 * 109.47194 * 294.99428 * 8 6 5 10 10 C 1.53717 * 109.14426 * 297.28777 * 6 5 4 11 11 N 1.47141 * 108.16303 * 52.53922 * 10 6 5 12 12 S 1.65604 * 120.98247 * 129.43207 * 11 10 6 13 13 O 1.42098 * 106.40164 * 156.17504 * 12 11 10 14 14 O 1.42101 * 106.40011 * 23.25930 * 12 11 10 15 15 C 1.76200 * 107.22014 * 269.71586 * 12 11 10 16 16 C 1.38652 * 119.87565 * 269.97988 * 15 12 11 17 17 C 1.38617 * 120.49927 * 180.02562 * 16 15 12 18 18 C 1.37640 * 120.24825 * 0.02562 * 17 16 15 19 19 C 1.40691 * 119.74474 * 359.97438 * 18 17 16 20 20 C 1.41397 * 120.24439 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00340 * 155.22746 * 20 19 18 22 22 C 1.39944 * 119.99619 * 335.21740 * 20 19 18 23 23 N 1.30826 * 120.00374 * 342.28451 * 22 20 19 24 24 Si 1.86805 * 119.99612 * 162.27647 * 22 20 19 25 25 H 1.48494 * 109.47009 * 60.00604 * 24 22 20 26 26 H 1.48500 * 109.46908 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47350 * 300.00449 * 24 22 20 28 28 C 1.37595 * 119.87506 * 89.99642 * 15 12 11 29 29 H 1.09004 * 109.47060 * 180.51574 * 1 2 3 30 30 H 1.08995 * 109.47097 * 300.51605 * 1 2 3 31 31 H 1.09005 * 109.47210 * 60.52072 * 1 2 3 32 32 H 1.09001 * 109.50807 * 187.34827 * 4 2 1 33 33 H 1.08999 * 109.51363 * 307.49606 * 4 2 1 34 34 H 1.08997 * 109.46964 * 55.00368 * 8 6 5 35 35 H 1.09004 * 109.46971 * 174.99478 * 8 6 5 36 36 H 0.96701 * 113.99746 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.83553 * 292.85481 * 10 6 5 38 38 H 1.09001 * 109.74327 * 172.16802 * 10 6 5 39 39 H 1.07998 * 119.74959 * 0.04222 * 16 15 12 40 40 H 1.08002 * 119.87093 * 180.02562 * 17 16 15 41 41 H 1.07994 * 120.12340 * 180.02562 * 18 17 16 42 42 H 0.96998 * 119.99595 * 179.97438 * 23 22 20 43 43 H 1.08004 * 120.12888 * 359.70788 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0463 -0.7338 1.2430 5 8 1.7168 -2.1211 1.1413 6 6 2.3261 -2.7877 0.0329 7 1 3.4092 -2.6825 0.0955 8 6 1.9541 -4.2715 0.0617 9 8 2.5173 -4.8813 1.2248 10 6 1.8191 -2.1582 -1.2746 11 7 2.0256 -0.7036 -1.1936 12 16 2.7872 0.1185 -2.4129 13 8 2.3465 1.4665 -2.3242 14 8 2.6383 -0.6724 -3.5841 15 6 4.5086 0.1320 -2.0371 16 6 5.0430 1.1663 -1.2842 17 6 6.3955 1.1902 -0.9814 18 6 7.2235 0.1849 -1.4268 19 6 6.6922 -0.8697 -2.1915 20 6 7.5331 -1.9081 -2.6540 21 1 7.1187 -2.8806 -2.8751 22 6 8.9024 -1.6755 -2.8256 23 7 9.3535 -0.4497 -2.9000 24 14 10.0861 -3.1154 -2.9482 25 1 9.7175 -3.9615 -4.1115 26 1 11.4694 -2.6052 -3.1252 27 1 10.0125 -3.9240 -1.7049 28 6 5.3175 -0.8838 -2.4922 29 1 -0.3633 -1.0277 0.0093 30 1 -0.3633 0.5218 0.8853 31 1 -0.3634 0.5057 -0.8946 32 1 3.1283 -0.6204 1.3094 33 1 1.5801 -0.3132 2.1339 34 1 0.8693 -4.3737 0.0868 35 1 2.3445 -4.7613 -0.8305 36 1 2.3210 -5.8245 1.3085 37 1 0.7577 -2.3719 -1.4007 38 1 2.3782 -2.5620 -2.1187 39 1 4.4007 1.9593 -0.9307 40 1 6.8010 2.0006 -0.3938 41 1 8.2769 0.2053 -1.1893 42 1 10.3026 -0.2886 -3.0185 43 1 4.8983 -1.6909 -3.0748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619491317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:23 Heat of formation + Delta-G solvation = -146.765573 kcal Electronic energy + Delta-G solvation = -29002.494342 eV Core-core repulsion = 24946.535870 eV Total energy + Delta-G solvation = -4055.958472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.66835 -37.68116 -36.91395 -36.69080 -35.39874 -34.92505 -33.88032 -32.71177 -30.12052 -29.84739 -29.30361 -26.23178 -25.55729 -25.39424 -22.43356 -21.93986 -21.03111 -20.34757 -18.71027 -18.07923 -17.44047 -17.31208 -16.70480 -16.02784 -15.69463 -15.34929 -15.31075 -15.01260 -14.74649 -14.57455 -14.02734 -13.75634 -13.53342 -13.35759 -13.07281 -12.97454 -12.62220 -12.39374 -12.02283 -11.95883 -11.66442 -11.65628 -11.59146 -11.43049 -11.40750 -11.28463 -11.11938 -11.10052 -10.89990 -10.65019 -10.44668 -10.29181 -10.07235 -9.79812 -9.53632 -9.37462 -8.71714 -8.07846 -7.74569 -6.95440 -4.57243 0.84927 2.14145 2.60236 2.97663 2.99349 3.05451 3.28933 3.67450 3.80303 4.01705 4.20233 4.36951 4.69275 4.73097 4.81454 4.98515 5.07242 5.13943 5.18346 5.26626 5.35736 5.41328 5.47849 5.56706 5.62155 5.64970 5.83192 5.93430 5.99280 6.09799 6.13586 6.25826 6.53725 6.59987 6.72305 6.86173 7.00726 7.16622 7.17511 7.33044 7.53792 7.67998 7.75827 7.90037 8.35689 8.63260 8.67578 10.00259 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.004405 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.991242 B = 6354.633596 C = 7644.182139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.114 3.886 3 H 0.106 0.894 4 C 0.054 3.946 5 O -0.365 6.365 6 C 0.076 3.924 7 H 0.079 0.921 8 C 0.086 3.914 9 O -0.564 6.564 10 C 0.099 3.901 11 N -0.998 5.998 12 S 2.685 3.315 13 O -0.969 6.969 14 O -0.967 6.967 15 C -0.632 4.632 16 C -0.148 4.148 17 C -0.120 4.120 18 C -0.117 4.117 19 C 0.093 3.907 20 C -0.460 4.460 21 H 0.082 0.918 22 C 0.075 3.925 23 N -0.793 5.793 24 Si 0.912 3.088 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.127 4.127 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.378 0.622 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.285 0.715 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.834 -4.602 7.013 14.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.008 3.992 3 H 0.124 0.876 4 C -0.025 4.025 5 O -0.283 6.283 6 C 0.016 3.984 7 H 0.097 0.903 8 C 0.007 3.993 9 O -0.368 6.368 10 C -0.027 4.027 11 N -0.834 5.834 12 S 2.783 3.217 13 O -0.959 6.959 14 O -0.957 6.957 15 C -0.724 4.724 16 C -0.169 4.169 17 C -0.139 4.139 18 C -0.136 4.136 19 C 0.090 3.910 20 C -0.490 4.490 21 H 0.100 0.900 22 C -0.143 4.143 23 N -0.418 5.418 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.187 1.187 28 C -0.149 4.149 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.224 0.776 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.096 0.904 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.966 -3.568 6.431 14.045 hybrid contribution 1.337 -1.006 -0.095 1.676 sum -10.629 -4.573 6.336 13.192 Atomic orbital electron populations 1.22026 0.94335 1.02740 1.02266 1.21651 0.95532 0.96817 0.85178 0.87605 1.22976 1.00517 0.81860 0.97102 1.87942 1.71576 1.21475 1.47348 1.22554 0.98547 0.90748 0.86506 0.90335 1.22094 0.97527 0.91255 0.88377 1.86561 1.77942 1.27405 1.44925 1.21961 1.02500 0.79882 0.98358 1.58049 1.73291 1.16112 1.35977 1.01909 0.74550 0.72717 0.72525 1.93505 1.81751 1.34514 1.86159 1.93521 1.86920 1.70727 1.44571 1.29777 1.21900 1.05537 1.15171 1.20058 0.95872 0.97678 1.03312 1.20812 0.93555 0.98630 1.00936 1.21641 0.99724 0.95138 0.97131 1.17667 0.90989 0.92702 0.89685 1.19568 0.91988 0.98346 1.39055 0.89974 1.25939 0.99364 0.96835 0.92170 1.69772 1.16649 1.21276 1.34079 0.86290 0.78543 0.81439 0.80104 1.18788 1.20200 1.18658 1.20710 0.95009 0.97413 1.01742 0.91698 0.91451 0.92187 0.91984 0.87884 0.92739 0.91664 0.77565 0.90318 0.88000 0.87711 0.88334 0.85754 0.90439 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.24 37.16 0.34 -1.35 16 2 C 0.11 1.48 3.16 -67.42 -0.21 1.27 16 3 H 0.11 1.37 7.25 -51.93 -0.38 0.99 16 4 C 0.05 0.67 6.36 37.31 0.24 0.90 16 5 O -0.37 -5.02 9.98 -39.97 -0.40 -5.41 16 6 C 0.08 1.01 3.08 -26.36 -0.08 0.93 16 7 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 8 C 0.09 0.91 6.71 37.16 0.25 1.16 16 9 O -0.56 -6.57 13.63 -39.97 -0.54 -7.12 16 10 C 0.10 1.30 5.49 -3.32 -0.02 1.28 16 11 N -1.00 -14.99 3.03 -105.80 -0.32 -15.31 16 12 S 2.68 50.78 5.70 -107.50 -0.61 50.16 16 13 O -0.97 -19.64 16.07 -57.17 -0.92 -20.56 16 14 O -0.97 -20.17 16.06 -57.17 -0.92 -21.09 16 15 C -0.63 -13.69 5.97 -39.66 -0.24 -13.93 16 16 C -0.15 -3.18 9.53 -39.29 -0.37 -3.55 16 17 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 18 C -0.12 -2.87 8.69 -38.87 -0.34 -3.21 16 19 C 0.09 2.37 5.57 -106.83 -0.60 1.78 16 20 C -0.46 -11.65 9.05 -37.74 -0.34 -11.99 16 21 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 22 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 23 N -0.79 -19.65 10.97 55.55 0.61 -19.04 16 24 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 28 C -0.13 -3.01 9.26 -38.87 -0.36 -3.37 16 29 H 0.06 0.70 7.21 -51.93 -0.37 0.32 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.38 2.43 9.12 45.56 0.42 2.85 16 37 H 0.08 0.87 7.65 -51.93 -0.40 0.48 16 38 H 0.10 1.35 7.24 -51.93 -0.38 0.97 16 39 H 0.10 2.02 7.60 -52.49 -0.40 1.62 16 40 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.12 3.12 6.18 -52.49 -0.32 2.79 16 42 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 43 H 0.11 2.46 7.61 -52.48 -0.40 2.06 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -32.07 364.72 -10.02 -42.08 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.16 Total: 9.36 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -2.22 Total: -31.42 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.29 Total: -34.35 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -2.78 Total: -54.18 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 50.78 SS G_CDS: -0.61 Total: 50.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.07 -10.02 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.684 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds