Wall clock time and date at job start Sat Apr 11 2020 06:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.67541 * 2 1 4 4 C 1.53294 * 109.68075 * 120.55524 * 2 1 3 5 5 O 1.42958 * 109.22298 * 67.42197 * 4 2 1 6 6 C 1.42967 * 114.16554 * 62.58198 * 5 4 2 7 7 H 1.08998 * 109.51209 * 57.38962 * 6 5 4 8 8 C 1.53000 * 109.51061 * 177.49232 * 6 5 4 9 9 O 1.42897 * 109.47194 * 294.99428 * 8 6 5 10 10 C 1.53717 * 109.14426 * 297.28777 * 6 5 4 11 11 N 1.47141 * 108.16303 * 52.53922 * 10 6 5 12 12 S 1.65604 * 120.98247 * 129.43207 * 11 10 6 13 13 O 1.42098 * 106.40164 * 156.17504 * 12 11 10 14 14 O 1.42101 * 106.40011 * 23.25930 * 12 11 10 15 15 C 1.76200 * 107.22014 * 269.71586 * 12 11 10 16 16 C 1.38652 * 119.87565 * 269.97988 * 15 12 11 17 17 C 1.38617 * 120.49927 * 180.02562 * 16 15 12 18 18 C 1.37640 * 120.24825 * 0.02562 * 17 16 15 19 19 C 1.40691 * 119.74474 * 359.97438 * 18 17 16 20 20 C 1.41397 * 120.24439 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00340 * 155.22746 * 20 19 18 22 22 C 1.39944 * 119.99619 * 335.21740 * 20 19 18 23 23 N 1.30826 * 120.00374 * 342.28451 * 22 20 19 24 24 Si 1.86805 * 119.99612 * 162.27647 * 22 20 19 25 25 H 1.48494 * 109.47009 * 60.00604 * 24 22 20 26 26 H 1.48500 * 109.46908 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47350 * 300.00449 * 24 22 20 28 28 C 1.37595 * 119.87506 * 89.99642 * 15 12 11 29 29 H 1.09004 * 109.47060 * 180.51574 * 1 2 3 30 30 H 1.08995 * 109.47097 * 300.51605 * 1 2 3 31 31 H 1.09005 * 109.47210 * 60.52072 * 1 2 3 32 32 H 1.09001 * 109.50807 * 187.34827 * 4 2 1 33 33 H 1.08999 * 109.51363 * 307.49606 * 4 2 1 34 34 H 1.08997 * 109.46964 * 55.00368 * 8 6 5 35 35 H 1.09004 * 109.46971 * 174.99478 * 8 6 5 36 36 H 0.96701 * 113.99746 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.83553 * 292.85481 * 10 6 5 38 38 H 1.09001 * 109.74327 * 172.16802 * 10 6 5 39 39 H 1.07998 * 119.74959 * 0.04222 * 16 15 12 40 40 H 1.08002 * 119.87093 * 180.02562 * 17 16 15 41 41 H 1.07994 * 120.12340 * 180.02562 * 18 17 16 42 42 H 0.96998 * 119.99595 * 179.97438 * 23 22 20 43 43 H 1.08004 * 120.12888 * 359.70788 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0463 -0.7338 1.2430 5 8 1.7168 -2.1211 1.1413 6 6 2.3261 -2.7877 0.0329 7 1 3.4092 -2.6825 0.0955 8 6 1.9541 -4.2715 0.0617 9 8 2.5173 -4.8813 1.2248 10 6 1.8191 -2.1582 -1.2746 11 7 2.0256 -0.7036 -1.1936 12 16 2.7872 0.1185 -2.4129 13 8 2.3465 1.4665 -2.3242 14 8 2.6383 -0.6724 -3.5841 15 6 4.5086 0.1320 -2.0371 16 6 5.0430 1.1663 -1.2842 17 6 6.3955 1.1902 -0.9814 18 6 7.2235 0.1849 -1.4268 19 6 6.6922 -0.8697 -2.1915 20 6 7.5331 -1.9081 -2.6540 21 1 7.1187 -2.8806 -2.8751 22 6 8.9024 -1.6755 -2.8256 23 7 9.3535 -0.4497 -2.9000 24 14 10.0861 -3.1154 -2.9482 25 1 9.7175 -3.9615 -4.1115 26 1 11.4694 -2.6052 -3.1252 27 1 10.0125 -3.9240 -1.7049 28 6 5.3175 -0.8838 -2.4922 29 1 -0.3633 -1.0277 0.0093 30 1 -0.3633 0.5218 0.8853 31 1 -0.3634 0.5057 -0.8946 32 1 3.1283 -0.6204 1.3094 33 1 1.5801 -0.3132 2.1339 34 1 0.8693 -4.3737 0.0868 35 1 2.3445 -4.7613 -0.8305 36 1 2.3210 -5.8245 1.3085 37 1 0.7577 -2.3719 -1.4007 38 1 2.3782 -2.5620 -2.1187 39 1 4.4007 1.9593 -0.9307 40 1 6.8010 2.0006 -0.3938 41 1 8.2769 0.2053 -1.1893 42 1 10.3026 -0.2886 -3.0185 43 1 4.8983 -1.6909 -3.0748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491317.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:22 Heat of formation + Delta-G solvation = -170.922729 kcal Electronic energy + Delta-G solvation = -29003.541875 eV Core-core repulsion = 24946.535870 eV Total energy + Delta-G solvation = -4057.006005 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70666 -39.47953 -38.43488 -37.63456 -36.99689 -36.02425 -35.69508 -33.71275 -31.95123 -31.63300 -30.30995 -27.38362 -27.16937 -26.44302 -23.70377 -23.42897 -22.82690 -21.50813 -20.18568 -19.55454 -18.79654 -18.32612 -17.79022 -17.73065 -17.02854 -16.91916 -16.54085 -16.33590 -16.10148 -15.92944 -15.28926 -15.15785 -14.88043 -14.74870 -14.35019 -14.08525 -13.89193 -13.77260 -13.43058 -13.35742 -13.29051 -13.12843 -13.09469 -12.99063 -12.90541 -12.60220 -12.56724 -12.34856 -12.23536 -12.06127 -11.66272 -11.55601 -11.45018 -11.15482 -11.04554 -10.89194 -9.92917 -9.81844 -9.59520 -8.75391 -6.47923 -0.65671 0.36180 0.81335 1.35879 1.45282 1.48934 1.89903 2.15964 2.52621 2.69289 2.71738 3.09529 3.38264 3.45664 3.62659 3.81403 4.02810 4.06292 4.18140 4.23814 4.25166 4.34032 4.39123 4.56127 4.57450 4.59917 4.67182 4.79449 4.80125 4.85730 4.90423 4.94429 5.02624 5.15745 5.17749 5.36377 5.37166 5.49617 5.53449 5.84828 5.90156 6.06704 6.14956 6.49120 6.77098 6.81301 6.96127 8.22765 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.004405 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.991242 B = 6354.633596 C = 7644.182139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.106 3.894 3 H 0.106 0.894 4 C 0.053 3.947 5 O -0.370 6.370 6 C 0.074 3.926 7 H 0.046 0.954 8 C 0.087 3.913 9 O -0.589 6.589 10 C 0.094 3.906 11 N -0.991 5.991 12 S 2.711 3.289 13 O -0.979 6.979 14 O -0.987 6.987 15 C -0.641 4.641 16 C -0.149 4.149 17 C -0.122 4.122 18 C -0.141 4.141 19 C 0.064 3.936 20 C -0.497 4.497 21 H 0.082 0.918 22 C 0.037 3.963 23 N -0.824 5.824 24 Si 0.984 3.016 25 H -0.259 1.259 26 H -0.267 1.267 27 H -0.258 1.258 28 C -0.145 4.145 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.113 0.887 42 H 0.292 0.708 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 -5.163 7.934 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.001 3.999 3 H 0.124 0.876 4 C -0.026 4.026 5 O -0.288 6.288 6 C 0.014 3.986 7 H 0.065 0.935 8 C 0.008 3.992 9 O -0.398 6.398 10 C -0.031 4.031 11 N -0.831 5.831 12 S 2.806 3.194 13 O -0.970 6.970 14 O -0.977 6.977 15 C -0.730 4.730 16 C -0.170 4.170 17 C -0.141 4.141 18 C -0.161 4.161 19 C 0.061 3.939 20 C -0.526 4.526 21 H 0.100 0.900 22 C -0.179 4.179 23 N -0.450 5.450 24 Si 0.804 3.196 25 H -0.183 1.183 26 H -0.191 1.191 27 H -0.183 1.183 28 C -0.166 4.166 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.152 0.848 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.538 -4.127 7.357 15.951 hybrid contribution 1.695 -0.776 -0.305 1.889 sum -11.844 -4.903 7.051 14.630 Atomic orbital electron populations 1.22020 0.92204 1.03399 1.03280 1.21961 0.97177 0.96625 0.84156 0.87619 1.23102 0.99806 0.81546 0.98100 1.87941 1.71390 1.22009 1.47505 1.22574 0.96773 0.92734 0.86472 0.93548 1.22148 0.98856 0.89402 0.88757 1.86494 1.78472 1.29456 1.45391 1.22191 1.04219 0.78438 0.98257 1.57797 1.72140 1.17089 1.36033 1.01139 0.73224 0.72411 0.72645 1.93482 1.81300 1.35565 1.86614 1.93488 1.86732 1.71158 1.46364 1.30327 1.24151 1.04597 1.13892 1.20438 0.95962 0.98040 1.02569 1.21143 0.93839 0.98599 1.00541 1.21647 0.99622 0.96307 0.98511 1.18037 0.92100 0.93433 0.90369 1.19846 0.93353 0.98557 1.40803 0.90006 1.26784 1.00442 0.99514 0.91163 1.69820 1.17433 1.23147 1.34564 0.85215 0.76399 0.77826 0.80136 1.18302 1.19075 1.18252 1.20801 0.94826 0.98386 1.02553 0.91231 0.88905 0.92694 0.93794 0.84826 0.90479 0.90113 0.75081 0.87350 0.88470 0.85151 0.85546 0.86952 0.89714 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.24 71.98 0.66 -2.15 16 2 C 0.11 2.53 3.16 44.97 0.14 2.67 16 3 H 0.11 2.53 7.25 -2.39 -0.02 2.51 16 4 C 0.05 1.21 6.36 72.08 0.46 1.67 16 5 O -0.37 -9.51 9.98 -144.45 -1.44 -10.95 16 6 C 0.07 1.91 3.08 30.84 0.09 2.00 16 7 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 8 C 0.09 1.68 6.71 71.98 0.48 2.17 16 9 O -0.59 -12.93 13.63 -144.45 -1.97 -14.90 16 10 C 0.09 2.35 5.49 86.50 0.47 2.82 16 11 N -0.99 -28.57 3.03 -488.64 -1.48 -30.05 16 12 S 2.71 101.02 5.70 -56.49 -0.32 100.70 16 13 O -0.98 -38.45 16.07 -128.00 -2.06 -40.51 16 14 O -0.99 -41.00 16.06 -128.00 -2.06 -43.05 16 15 C -0.64 -28.08 5.97 22.22 0.13 -27.95 16 16 C -0.15 -6.38 9.53 22.46 0.21 -6.16 16 17 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 18 C -0.14 -7.21 8.69 22.73 0.20 -7.01 16 19 C 0.06 3.40 5.57 -21.29 -0.12 3.28 16 20 C -0.50 -26.17 9.05 23.46 0.21 -25.96 16 21 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 22 C 0.04 1.79 5.14 85.26 0.44 2.23 16 23 N -0.82 -41.98 10.97 21.83 0.24 -41.74 16 24 Si 0.98 37.04 29.59 68.60 2.03 39.07 16 25 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 26 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 27 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 28 C -0.14 -7.09 9.26 22.73 0.21 -6.88 16 29 H 0.07 1.25 7.21 -2.38 -0.02 1.23 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.40 4.44 9.12 -74.06 -0.68 3.77 16 37 H 0.11 2.10 7.65 -2.39 -0.02 2.08 16 38 H 0.10 2.52 7.24 -2.39 -0.02 2.50 16 39 H 0.13 4.82 7.60 -2.91 -0.02 4.80 16 40 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 41 H 0.11 5.90 6.18 -2.91 -0.02 5.89 16 42 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 43 H 0.11 5.20 7.61 -2.91 -0.02 5.18 16 Total: -1.00 -70.35 364.72 -2.87 -73.22 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.36 Total: 32.73 kcal Atomic # 6 Polarization: -68.35 SS G_CDS: 3.83 Total: -64.52 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.24 Total: -71.79 kcal Atomic # 8 Polarization: -101.88 SS G_CDS: -7.52 Total: -109.40 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Atomic # 16 Polarization: 101.02 SS G_CDS: -0.32 Total: 100.70 kcal Total: -70.35 -2.87 -73.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491317.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.704 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds