Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.51058 * 2 1 4 4 C 1.53290 * 109.50992 * 120.15177 * 2 1 3 5 5 N 1.47159 * 108.38394 * 172.22370 * 4 2 1 6 6 S 1.65600 * 120.98107 * 129.44241 * 5 4 2 7 7 O 1.42095 * 106.40301 * 23.56363 * 6 5 4 8 8 O 1.42100 * 106.40125 * 156.48647 * 6 5 4 9 9 C 1.76201 * 107.21546 * 270.02400 * 6 5 4 10 10 C 1.38660 * 119.87789 * 269.72652 * 9 6 5 11 11 C 1.38608 * 120.50187 * 179.72630 * 10 9 6 12 12 C 1.37639 * 120.24907 * 0.54994 * 11 10 9 13 13 C 1.40692 * 119.74304 * 359.72654 * 12 11 10 14 14 C 1.41400 * 120.24317 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99784 * 155.22998 * 14 13 12 16 16 C 1.39944 * 119.99877 * 335.22866 * 14 13 12 17 17 N 1.30816 * 120.00196 * 342.31452 * 16 14 13 18 18 Si 1.86804 * 119.99663 * 162.31530 * 16 14 13 19 19 H 1.48495 * 109.46938 * 90.00107 * 18 16 14 20 20 H 1.48500 * 109.46907 * 209.99895 * 18 16 14 21 21 H 1.48491 * 109.47401 * 329.99761 * 18 16 14 22 22 C 1.37597 * 119.87841 * 90.00378 * 9 6 5 23 23 C 1.47149 * 118.03524 * 309.46843 * 5 4 2 24 24 C 1.53298 * 108.38803 * 50.53088 * 23 5 4 25 25 H 1.08993 * 109.50732 * 67.62198 * 24 23 5 26 26 C 1.53001 * 109.55174 * 187.75121 * 24 23 5 27 27 O 1.42900 * 109.46512 * 184.77071 * 26 24 23 28 28 O 1.42960 * 109.50925 * 239.89608 * 2 1 3 29 29 H 1.09003 * 109.47387 * 180.10225 * 1 2 3 30 30 H 1.09007 * 109.47093 * 60.10137 * 1 2 3 31 31 H 1.08994 * 109.47193 * 300.10422 * 1 2 3 32 32 H 1.08994 * 109.68346 * 291.94779 * 4 2 1 33 33 H 1.09001 * 109.68749 * 52.50512 * 4 2 1 34 34 H 1.08004 * 119.74663 * 359.97438 * 10 9 6 35 35 H 1.08001 * 119.87805 * 180.28042 * 11 10 9 36 36 H 1.08005 * 120.12431 * 179.75109 * 12 11 10 37 37 H 0.97004 * 120.00571 * 180.02562 * 17 16 14 38 38 H 1.08008 * 120.12254 * 0.02562 * 22 9 6 39 39 H 1.09007 * 109.67836 * 290.80524 * 23 5 4 40 40 H 1.08995 * 109.68155 * 170.25635 * 23 5 4 41 41 H 1.09002 * 109.47026 * 304.76847 * 26 24 23 42 42 H 1.08997 * 109.47406 * 64.77260 * 26 24 23 43 43 H 0.96705 * 113.99588 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7258 1.2494 5 7 3.5012 -0.8768 1.1332 6 16 4.5065 -0.4193 2.3671 7 8 3.7256 -0.4516 3.5538 8 8 5.7055 -1.1644 2.2050 9 6 4.9298 1.2695 2.0959 10 6 6.0513 1.5886 1.3455 11 6 6.3931 2.9127 1.1194 12 6 5.6270 3.9266 1.6482 13 6 4.4900 3.6146 2.4160 14 6 3.6958 4.6478 2.9647 15 1 2.6563 4.4658 3.1942 16 6 4.2568 5.9061 3.2105 17 7 5.5565 6.0429 3.2681 18 14 3.1495 7.3905 3.4561 19 1 2.8218 7.5303 4.8976 20 1 3.8494 8.6132 2.9867 21 1 1.8973 7.2079 2.6791 22 6 4.1494 2.2668 2.6343 23 6 4.0406 -1.4458 -0.1120 24 6 3.4312 -0.6850 -1.2951 25 1 3.8030 0.3396 -1.2993 26 6 3.8212 -1.3756 -2.6035 27 8 3.3465 -0.6043 -3.7089 28 8 2.0075 -0.6759 -1.1658 29 1 -0.3634 -1.0277 0.0018 30 1 -0.3634 0.5123 -0.8909 31 1 -0.3633 0.5154 0.8890 32 1 1.8030 -0.1408 2.1375 33 1 1.5758 -1.7085 1.3201 34 1 6.6609 0.7994 0.9308 35 1 7.2662 3.1498 0.5297 36 1 5.8974 4.9576 1.4741 37 1 5.9454 6.9151 3.4388 38 1 3.2790 2.0159 3.2226 39 1 3.7756 -2.5011 -0.1784 40 1 5.1251 -1.3376 -0.1254 41 1 4.9063 -1.4614 -2.6597 42 1 3.3758 -2.3699 -2.6363 43 1 3.5587 -0.9834 -4.5729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -148.095852 kcal Electronic energy + Delta-G solvation = -28814.657426 eV Core-core repulsion = 24758.641269 eV Total energy + Delta-G solvation = -4056.016157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.58929 -37.68202 -36.90177 -36.71987 -35.40522 -34.71336 -33.88178 -33.15566 -30.12238 -29.84113 -29.54332 -26.63515 -25.52143 -24.72716 -21.99770 -21.96026 -21.03127 -20.80170 -18.82969 -18.03349 -17.53426 -17.24263 -16.87137 -16.01855 -15.89407 -15.33135 -15.24554 -14.89888 -14.72587 -14.46020 -14.21929 -13.87077 -13.51847 -13.37123 -12.84390 -12.76562 -12.63017 -12.31229 -12.18406 -12.03401 -11.85495 -11.67913 -11.53463 -11.46177 -11.41874 -11.39354 -11.10372 -11.04077 -10.92078 -10.63778 -10.47194 -10.33843 -10.11812 -9.80218 -9.54626 -9.37552 -8.71320 -8.07928 -7.74577 -6.95582 -4.57196 0.84187 2.13813 2.59699 2.98216 2.99423 3.05942 3.28546 3.56840 3.80422 3.97389 4.19186 4.37190 4.67798 4.78412 4.78767 4.97690 5.02600 5.12053 5.20970 5.26106 5.33220 5.36708 5.41518 5.44065 5.66187 5.75789 5.85048 5.93646 5.98463 6.10599 6.11884 6.19028 6.48049 6.60100 6.72119 6.85512 7.00533 7.17309 7.21283 7.32959 7.48800 7.67794 7.75979 7.89954 8.35803 8.63249 8.67561 10.00088 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.004003 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.106241 B = 6992.828869 C = 7431.597211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 H 0.071 0.929 4 C 0.095 3.905 5 N -1.003 6.003 6 S 2.685 3.315 7 O -0.965 6.965 8 O -0.970 6.970 9 C -0.632 4.632 10 C -0.148 4.148 11 C -0.120 4.120 12 C -0.117 4.117 13 C 0.093 3.907 14 C -0.460 4.460 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.793 5.793 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.127 4.127 23 C 0.099 3.901 24 C 0.077 3.923 25 H 0.077 0.923 26 C 0.087 3.913 27 O -0.563 6.563 28 O -0.365 6.365 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.284 0.716 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.914 -10.331 -9.730 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 H 0.089 0.911 4 C -0.031 4.031 5 N -0.839 5.839 6 S 2.783 3.217 7 O -0.955 6.955 8 O -0.961 6.961 9 C -0.724 4.724 10 C -0.170 4.170 11 C -0.139 4.139 12 C -0.136 4.136 13 C 0.089 3.911 14 C -0.489 4.489 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.418 5.418 18 Si 0.735 3.265 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.148 4.148 23 C -0.027 4.027 24 C 0.017 3.983 25 H 0.095 0.905 26 C 0.008 3.992 27 O -0.368 6.368 28 O -0.284 6.284 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.808 -10.450 -8.603 14.364 hybrid contribution 0.172 1.232 -0.369 1.298 sum -4.635 -9.217 -8.972 13.673 Atomic orbital electron populations 1.21721 0.92355 1.02875 1.03008 1.22502 0.95347 0.96056 0.84836 0.91106 1.22143 0.79297 1.02017 0.99636 1.57967 1.16565 1.77866 1.31476 1.01905 0.72441 0.74895 0.72425 1.93525 1.70683 1.87784 1.43545 1.93502 1.45616 1.71072 1.85875 1.29774 1.07359 1.20881 1.14415 1.20054 0.97068 0.96432 1.03405 1.20808 0.99216 0.93080 1.00810 1.21644 0.96631 0.98698 0.96670 1.17671 0.92149 0.91317 0.89926 1.19594 0.98053 0.94547 1.36722 0.89929 1.25939 0.95293 1.00639 0.92440 1.69774 1.11730 1.26120 1.34145 0.86253 0.80943 0.79681 0.79607 1.19277 1.19967 1.18285 1.20723 1.00047 0.92633 1.01441 1.21883 0.99503 0.97959 0.83325 1.22439 0.82723 1.00333 0.92765 0.90550 1.22089 0.97647 0.94068 0.85395 1.86570 1.81720 1.52104 1.16412 1.87945 1.19813 1.77462 1.43202 0.91810 0.91467 0.90561 0.88067 0.90456 0.87731 0.88341 0.85744 0.90493 0.87156 0.90332 0.88117 0.91767 0.92645 0.77573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.57 37.16 0.36 -1.16 16 2 C 0.07 0.96 3.40 -26.58 -0.09 0.87 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.09 1.29 5.86 -3.53 -0.02 1.27 16 5 N -1.00 -15.28 3.34 -113.06 -0.38 -15.66 16 6 S 2.69 50.95 5.70 -107.50 -0.61 50.34 16 7 O -0.96 -20.26 16.07 -57.17 -0.92 -21.18 16 8 O -0.97 -19.59 16.06 -57.17 -0.92 -20.51 16 9 C -0.63 -13.72 5.97 -39.66 -0.24 -13.96 16 10 C -0.15 -3.19 9.53 -39.29 -0.37 -3.56 16 11 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.12 -2.88 8.69 -38.87 -0.34 -3.21 16 13 C 0.09 2.37 5.57 -106.83 -0.60 1.77 16 14 C -0.46 -11.64 9.05 -37.74 -0.34 -11.98 16 15 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 16 C 0.08 1.81 5.14 -17.35 -0.09 1.72 16 17 N -0.79 -19.64 10.97 55.55 0.61 -19.03 16 18 Si 0.91 17.86 29.60 -169.99 -5.03 12.83 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 C -0.13 -3.01 9.26 -38.87 -0.36 -3.37 16 23 C 0.10 1.28 5.86 -3.53 -0.02 1.26 16 24 C 0.08 1.01 3.06 -26.58 -0.08 0.93 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 26 C 0.09 0.87 6.72 37.16 0.25 1.12 16 27 O -0.56 -6.26 13.63 -39.97 -0.54 -6.81 16 28 O -0.37 -5.17 9.99 -39.97 -0.40 -5.57 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.40 7.25 -51.93 -0.38 1.02 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 2.01 7.59 -52.48 -0.40 1.61 16 35 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.12 3.12 6.18 -52.48 -0.32 2.80 16 37 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 38 H 0.11 2.49 7.60 -52.48 -0.40 2.09 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.24 7.25 -51.93 -0.38 0.87 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.38 2.20 9.12 45.56 0.42 2.61 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -32.19 366.89 -10.24 -42.43 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.24 Total: 9.00 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -2.34 Total: -31.36 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.23 Total: -34.69 kcal Atomic # 8 Polarization: -51.29 SS G_CDS: -2.78 Total: -54.07 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 50.95 SS G_CDS: -0.61 Total: 50.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.19 -10.24 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.664 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds