Wall clock time and date at job start Sat Apr 11 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.86582 * 2 1 4 4 O 1.43741 * 109.87601 * 121.00691 * 2 1 3 5 5 C 1.44384 * 106.97228 * 145.94088 * 4 2 1 6 6 C 1.54997 * 103.48883 * 319.94324 * 5 4 2 7 7 C 1.54098 * 109.87917 * 238.84330 * 2 1 3 8 8 O 1.42902 * 110.48843 * 119.86998 * 7 2 1 9 9 C 1.52995 * 110.48871 * 357.22386 * 7 2 1 10 10 N 1.46506 * 109.46977 * 185.00433 * 9 7 2 11 11 S 1.65599 * 119.99845 * 164.99938 * 10 9 7 12 12 O 1.42102 * 106.39977 * 178.53607 * 11 10 9 13 13 O 1.42097 * 106.40367 * 311.45242 * 11 10 9 14 14 C 1.76194 * 107.22020 * 64.99765 * 11 10 9 15 15 C 1.38654 * 119.87755 * 89.99740 * 14 11 10 16 16 C 1.38615 * 120.50190 * 179.97438 * 15 14 11 17 17 C 1.37640 * 120.25018 * 359.97438 * 16 15 14 18 18 C 1.40700 * 119.74282 * 0.02562 * 17 16 15 19 19 C 1.41388 * 120.24453 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00094 * 204.38200 * 19 18 17 21 21 C 1.39952 * 120.00110 * 24.38402 * 19 18 17 22 22 N 1.30818 * 120.00061 * 17.84875 * 21 19 18 23 23 Si 1.86805 * 119.99959 * 197.85885 * 21 19 18 24 24 H 1.48495 * 109.47080 * 94.68981 * 23 21 19 25 25 H 1.48498 * 109.46820 * 214.69059 * 23 21 19 26 26 H 1.48503 * 109.46863 * 334.69106 * 23 21 19 27 27 C 1.37596 * 119.87427 * 269.71977 * 14 11 10 28 28 H 1.08993 * 109.47353 * 300.44371 * 1 2 3 29 29 H 1.08997 * 109.46833 * 180.43875 * 1 2 3 30 30 H 1.09002 * 109.46993 * 60.44327 * 1 2 3 31 31 H 1.09004 * 110.61734 * 78.43742 * 5 4 2 32 32 H 1.08997 * 110.61589 * 201.28238 * 5 4 2 33 33 H 1.09002 * 110.90695 * 155.22775 * 6 5 4 34 34 H 1.09005 * 110.90176 * 278.82265 * 6 5 4 35 35 H 0.96693 * 114.00086 * 179.97438 * 8 7 2 36 36 H 1.09002 * 109.46788 * 304.99640 * 9 7 2 37 37 H 1.08991 * 109.47838 * 64.99935 * 9 7 2 38 38 H 0.96997 * 119.99797 * 344.98934 * 10 9 7 39 39 H 1.08003 * 119.75122 * 359.95986 * 15 14 11 40 40 H 1.08001 * 119.87378 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.12985 * 179.97438 * 17 16 15 42 42 H 0.96995 * 120.00224 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.12721 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6964 1.1586 5 6 3.2380 -1.3631 0.7666 6 6 2.9196 -1.8921 -0.6551 7 6 2.0540 -0.7498 -1.2401 8 8 2.8511 0.1175 -2.0492 9 6 0.8900 -1.3216 -2.0517 10 7 1.4146 -2.1286 -3.1562 11 16 0.4137 -3.1646 -3.9729 12 8 1.2022 -3.7648 -4.9914 13 8 -0.2810 -3.9136 -2.9851 14 6 -0.7962 -2.1819 -4.7944 15 6 -0.5570 -1.7251 -6.0815 16 6 -1.5000 -0.9516 -6.7402 17 6 -2.6865 -0.6289 -6.1216 18 6 -2.9400 -1.0869 -4.8156 19 6 -4.1555 -0.7621 -4.1704 20 1 -4.2087 -0.7532 -3.0918 21 6 -5.2896 -0.4521 -4.9295 22 7 -5.3443 -0.7906 -6.1920 23 14 -6.7253 0.4453 -4.1401 24 1 -6.5914 1.9040 -4.3835 25 1 -7.9980 -0.0405 -4.7312 26 1 -6.7276 0.1856 -2.6779 27 6 -1.9772 -1.8755 -4.1585 28 1 -0.3634 0.5207 0.8859 29 1 -0.3633 -1.0276 0.0079 30 1 -0.3633 0.5069 -0.8940 31 1 4.0685 -0.6578 0.7365 32 1 3.4599 -2.1870 1.4446 33 1 3.8333 -2.0239 -1.2347 34 1 2.3541 -2.8227 -0.6062 35 1 3.2073 -0.3030 -2.8437 36 1 0.2704 -1.9459 -1.4080 37 1 0.2899 -0.5044 -2.4519 38 1 2.3482 -2.0559 -3.4091 39 1 0.3712 -1.9737 -6.5746 40 1 -1.3030 -0.6008 -7.7425 41 1 -3.4197 -0.0257 -6.6364 42 1 -6.1302 -0.5754 -6.7182 43 1 -2.1632 -2.2357 -3.1575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619500394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:48 Heat of formation + Delta-G solvation = -151.425182 kcal Electronic energy + Delta-G solvation = -28528.830623 eV Core-core repulsion = 24472.670096 eV Total energy + Delta-G solvation = -4056.160527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.50004 -37.69640 -36.93908 -36.71598 -35.39944 -34.48960 -33.88757 -32.13009 -31.09414 -30.12842 -29.85308 -26.47324 -25.53301 -24.81341 -22.65372 -21.94970 -21.05668 -20.12676 -19.31501 -18.09491 -17.78440 -17.15694 -16.33517 -16.00606 -15.89867 -15.66329 -15.43601 -15.21977 -14.80654 -14.53221 -14.33815 -13.68012 -13.52081 -13.40487 -13.02692 -12.66514 -12.63600 -12.38525 -12.24400 -11.96850 -11.85483 -11.69725 -11.67900 -11.59447 -11.45160 -11.43319 -11.40749 -11.10232 -10.91323 -10.68684 -10.62548 -10.27771 -9.88540 -9.84517 -9.74419 -9.39528 -9.27949 -8.09712 -7.75688 -6.96247 -4.58004 0.89916 2.13053 2.58374 2.98117 3.02124 3.03100 3.39994 3.60958 3.73839 3.80034 4.12273 4.20718 4.32193 4.40509 4.62460 4.85696 4.92621 4.98298 5.18310 5.26696 5.30742 5.36715 5.42750 5.47858 5.60787 5.64645 5.72015 5.87771 5.95234 6.00073 6.12401 6.16646 6.59557 6.61672 6.70137 6.76748 6.95757 7.01610 7.16598 7.32251 7.33686 7.67536 7.75470 7.89216 8.35411 8.62667 8.66849 9.99346 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003893 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.206438 B = 7190.440287 C = 8641.906592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 H 0.084 0.916 4 O -0.369 6.369 5 C 0.050 3.950 6 C -0.183 4.183 7 C 0.100 3.900 8 O -0.546 6.546 9 C 0.096 3.904 10 N -1.123 6.123 11 S 2.690 3.310 12 O -0.974 6.974 13 O -0.968 6.968 14 C -0.631 4.631 15 C -0.146 4.146 16 C -0.121 4.121 17 C -0.116 4.116 18 C 0.092 3.908 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.793 5.793 23 Si 0.912 3.088 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.129 4.129 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.379 0.621 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.407 0.593 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.393 2.411 7.981 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.102 0.898 4 O -0.288 6.288 5 C -0.027 4.027 6 C -0.221 4.221 7 C 0.057 3.943 8 O -0.352 6.352 9 C -0.030 4.030 10 N -0.881 5.881 11 S 2.786 3.214 12 O -0.965 6.965 13 O -0.958 6.958 14 C -0.724 4.724 15 C -0.167 4.167 16 C -0.141 4.141 17 C -0.136 4.136 18 C 0.088 3.912 19 C -0.489 4.489 20 H 0.102 0.898 21 C -0.143 4.143 22 N -0.417 5.417 23 Si 0.736 3.264 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.183 1.183 27 C -0.150 4.150 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.228 0.772 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.240 0.760 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.868 1.879 8.533 14.737 hybrid contribution -0.411 0.616 -0.937 1.194 sum 11.457 2.495 7.596 13.971 Atomic orbital electron populations 1.22145 0.92396 1.03963 1.03608 1.22573 0.95550 0.96168 0.82484 0.89786 1.88936 1.39671 1.67822 1.32398 1.23490 0.87845 0.96431 0.94909 1.23848 1.01086 0.99583 0.97623 1.22721 0.90312 0.89692 0.91554 1.86555 1.69287 1.40323 1.39085 1.22175 0.96250 0.96139 0.88464 1.55653 1.23166 1.62152 1.47163 1.01672 0.73363 0.73386 0.72989 1.93528 1.70017 1.74708 1.58210 1.93535 1.74076 1.68018 1.60216 1.29669 1.13770 1.21471 1.07457 1.20075 0.99849 1.03196 0.93571 1.20821 0.95022 0.99769 0.98444 1.21669 0.95406 0.99993 0.96541 1.17677 0.92291 0.89110 0.92077 1.19623 0.93512 1.40842 0.94939 0.89849 1.25944 1.00267 0.93454 0.94670 1.69776 1.29732 1.33961 1.08281 0.86229 0.79451 0.80089 0.80645 1.19214 1.20149 1.18322 1.20744 0.94078 1.00287 0.99923 0.91163 0.90833 0.89955 0.91897 0.88739 0.89434 0.88892 0.77244 0.88476 0.89565 0.75984 0.87626 0.88353 0.85713 0.90508 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.41 37.16 0.31 -1.50 16 2 C 0.09 1.03 3.87 -26.15 -0.10 0.93 16 3 H 0.08 0.95 7.97 -51.93 -0.41 0.54 16 4 O -0.37 -4.42 11.19 -35.23 -0.39 -4.82 16 5 C 0.05 0.46 7.72 38.21 0.29 0.76 16 6 C -0.18 -1.70 6.04 -24.73 -0.15 -1.85 16 7 C 0.10 1.06 1.09 -89.10 -0.10 0.97 16 8 O -0.55 -5.62 12.99 -35.23 -0.46 -6.08 16 9 C 0.10 1.18 4.10 -4.04 -0.02 1.17 16 10 N -1.12 -14.10 5.58 -10.61 -0.06 -14.16 16 11 S 2.69 47.27 5.73 -107.50 -0.62 46.65 16 12 O -0.97 -18.89 17.27 -57.17 -0.99 -19.87 16 13 O -0.97 -19.42 16.73 -57.17 -0.96 -20.37 16 14 C -0.63 -13.18 5.94 -39.66 -0.24 -13.41 16 15 C -0.15 -3.07 9.53 -39.29 -0.37 -3.44 16 16 C -0.12 -2.65 10.02 -39.66 -0.40 -3.05 16 17 C -0.12 -2.82 8.70 -38.87 -0.34 -3.16 16 18 C 0.09 2.29 5.58 -106.82 -0.60 1.70 16 19 C -0.46 -11.41 9.05 -37.74 -0.34 -11.76 16 20 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 21 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 22 N -0.79 -19.41 10.95 55.55 0.61 -18.80 16 23 Si 0.91 17.65 29.60 -169.99 -5.03 12.62 16 24 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 25 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 27 C -0.13 -2.95 9.26 -38.87 -0.36 -3.31 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.83 6.53 -51.93 -0.34 0.49 16 30 H 0.08 0.89 7.01 -51.93 -0.36 0.53 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 35 H 0.38 2.75 7.83 45.56 0.36 3.10 16 36 H 0.10 1.25 6.12 -51.93 -0.32 0.93 16 37 H 0.09 1.11 7.04 -51.93 -0.37 0.75 16 38 H 0.41 3.84 7.44 -34.47 -0.26 3.59 16 39 H 0.11 2.00 7.60 -52.48 -0.40 1.60 16 40 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.13 3.08 6.16 -52.49 -0.32 2.76 16 42 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 43 H 0.11 2.43 7.60 -52.49 -0.40 2.03 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -31.24 361.75 -9.82 -41.06 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -4.89 Total: 12.60 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: -2.49 Total: -34.27 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.55 Total: -32.96 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -2.80 Total: -51.14 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 47.27 SS G_CDS: -0.62 Total: 46.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.24 -9.82 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619500394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.369 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds