Wall clock time and date at job start Sat Apr 11 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.86582 * 2 1 4 4 O 1.43741 * 109.87601 * 121.00691 * 2 1 3 5 5 C 1.44384 * 106.97228 * 145.94088 * 4 2 1 6 6 C 1.54997 * 103.48883 * 319.94324 * 5 4 2 7 7 C 1.54098 * 109.87917 * 238.84330 * 2 1 3 8 8 O 1.42902 * 110.48843 * 119.86998 * 7 2 1 9 9 C 1.52995 * 110.48871 * 357.22386 * 7 2 1 10 10 N 1.46506 * 109.46977 * 185.00433 * 9 7 2 11 11 S 1.65599 * 119.99845 * 164.99938 * 10 9 7 12 12 O 1.42102 * 106.39977 * 178.53607 * 11 10 9 13 13 O 1.42097 * 106.40367 * 311.45242 * 11 10 9 14 14 C 1.76194 * 107.22020 * 64.99765 * 11 10 9 15 15 C 1.38654 * 119.87755 * 89.99740 * 14 11 10 16 16 C 1.38615 * 120.50190 * 179.97438 * 15 14 11 17 17 C 1.37640 * 120.25018 * 359.97438 * 16 15 14 18 18 C 1.40700 * 119.74282 * 0.02562 * 17 16 15 19 19 C 1.41388 * 120.24453 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00094 * 204.38200 * 19 18 17 21 21 C 1.39952 * 120.00110 * 24.38402 * 19 18 17 22 22 N 1.30818 * 120.00061 * 17.84875 * 21 19 18 23 23 Si 1.86805 * 119.99959 * 197.85885 * 21 19 18 24 24 H 1.48495 * 109.47080 * 94.68981 * 23 21 19 25 25 H 1.48498 * 109.46820 * 214.69059 * 23 21 19 26 26 H 1.48503 * 109.46863 * 334.69106 * 23 21 19 27 27 C 1.37596 * 119.87427 * 269.71977 * 14 11 10 28 28 H 1.08993 * 109.47353 * 300.44371 * 1 2 3 29 29 H 1.08997 * 109.46833 * 180.43875 * 1 2 3 30 30 H 1.09002 * 109.46993 * 60.44327 * 1 2 3 31 31 H 1.09004 * 110.61734 * 78.43742 * 5 4 2 32 32 H 1.08997 * 110.61589 * 201.28238 * 5 4 2 33 33 H 1.09002 * 110.90695 * 155.22775 * 6 5 4 34 34 H 1.09005 * 110.90176 * 278.82265 * 6 5 4 35 35 H 0.96693 * 114.00086 * 179.97438 * 8 7 2 36 36 H 1.09002 * 109.46788 * 304.99640 * 9 7 2 37 37 H 1.08991 * 109.47838 * 64.99935 * 9 7 2 38 38 H 0.96997 * 119.99797 * 344.98934 * 10 9 7 39 39 H 1.08003 * 119.75122 * 359.95986 * 15 14 11 40 40 H 1.08001 * 119.87378 * 179.97438 * 16 15 14 41 41 H 1.07999 * 120.12985 * 179.97438 * 17 16 15 42 42 H 0.96995 * 120.00224 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.12721 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6964 1.1586 5 6 3.2380 -1.3631 0.7666 6 6 2.9196 -1.8921 -0.6551 7 6 2.0540 -0.7498 -1.2401 8 8 2.8511 0.1175 -2.0492 9 6 0.8900 -1.3216 -2.0517 10 7 1.4146 -2.1286 -3.1562 11 16 0.4137 -3.1646 -3.9729 12 8 1.2022 -3.7648 -4.9914 13 8 -0.2810 -3.9136 -2.9851 14 6 -0.7962 -2.1819 -4.7944 15 6 -0.5570 -1.7251 -6.0815 16 6 -1.5000 -0.9516 -6.7402 17 6 -2.6865 -0.6289 -6.1216 18 6 -2.9400 -1.0869 -4.8156 19 6 -4.1555 -0.7621 -4.1704 20 1 -4.2087 -0.7532 -3.0918 21 6 -5.2896 -0.4521 -4.9295 22 7 -5.3443 -0.7906 -6.1920 23 14 -6.7253 0.4453 -4.1401 24 1 -6.5914 1.9040 -4.3835 25 1 -7.9980 -0.0405 -4.7312 26 1 -6.7276 0.1856 -2.6779 27 6 -1.9772 -1.8755 -4.1585 28 1 -0.3634 0.5207 0.8859 29 1 -0.3633 -1.0276 0.0079 30 1 -0.3633 0.5069 -0.8940 31 1 4.0685 -0.6578 0.7365 32 1 3.4599 -2.1870 1.4446 33 1 3.8333 -2.0239 -1.2347 34 1 2.3541 -2.8227 -0.6062 35 1 3.2073 -0.3030 -2.8437 36 1 0.2704 -1.9459 -1.4080 37 1 0.2899 -0.5044 -2.4519 38 1 2.3482 -2.0559 -3.4091 39 1 0.3712 -1.9737 -6.5746 40 1 -1.3030 -0.6008 -7.7425 41 1 -3.4197 -0.0257 -6.6364 42 1 -6.1302 -0.5754 -6.7182 43 1 -2.1632 -2.2357 -3.1575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619500394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:47 Heat of formation + Delta-G solvation = -175.833169 kcal Electronic energy + Delta-G solvation = -28529.889033 eV Core-core repulsion = 24472.670096 eV Total energy + Delta-G solvation = -4057.218937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34173 -39.44439 -38.30796 -37.76215 -36.94173 -35.67348 -35.49079 -33.01982 -31.91222 -31.90528 -31.58784 -27.43020 -27.32335 -25.71690 -23.69144 -23.39063 -22.80683 -21.04468 -20.71270 -19.69468 -18.84304 -18.37293 -17.70608 -17.30713 -16.97802 -16.85764 -16.57145 -16.48812 -16.32416 -15.82773 -15.38031 -15.20920 -15.05240 -14.53070 -14.31462 -13.88259 -13.73207 -13.50341 -13.37286 -13.29624 -13.23255 -13.09930 -13.06612 -13.05378 -12.99981 -12.83794 -12.58087 -12.52565 -12.20448 -12.19248 -11.56810 -11.52698 -11.38275 -11.14379 -11.10371 -10.69388 -10.51978 -9.85311 -9.55804 -8.72800 -6.44385 -0.54929 0.40340 0.84454 1.38382 1.46611 1.51746 2.05702 2.18168 2.54592 2.75300 2.81937 2.95091 3.30800 3.46270 3.49951 3.57144 3.80182 4.09879 4.20663 4.25291 4.30633 4.33613 4.44885 4.48435 4.61341 4.65923 4.68392 4.83067 4.85151 4.90664 4.97915 5.02247 5.05548 5.07327 5.21294 5.27488 5.41318 5.56216 5.82819 5.89476 5.94608 6.00519 6.10703 6.53478 6.67714 6.80831 6.85281 8.25299 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003893 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.206438 B = 7190.440287 C = 8641.906592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 H 0.083 0.917 4 O -0.388 6.388 5 C 0.044 3.956 6 C -0.182 4.182 7 C 0.108 3.892 8 O -0.553 6.553 9 C 0.092 3.908 10 N -1.100 6.100 11 S 2.724 3.276 12 O -0.986 6.986 13 O -0.991 6.991 14 C -0.640 4.640 15 C -0.147 4.147 16 C -0.125 4.125 17 C -0.141 4.141 18 C 0.063 3.937 19 C -0.495 4.495 20 H 0.083 0.917 21 C 0.037 3.963 22 N -0.825 5.825 23 Si 0.982 3.018 24 H -0.260 1.260 25 H -0.270 1.270 26 H -0.257 1.257 27 C -0.143 4.143 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.393 0.607 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.426 0.574 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.291 0.709 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.012 2.566 8.416 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.030 3.970 3 H 0.101 0.899 4 O -0.308 6.308 5 C -0.031 4.031 6 C -0.220 4.220 7 C 0.065 3.935 8 O -0.361 6.361 9 C -0.034 4.034 10 N -0.863 5.863 11 S 2.816 3.184 12 O -0.976 6.976 13 O -0.981 6.981 14 C -0.728 4.728 15 C -0.168 4.168 16 C -0.144 4.144 17 C -0.161 4.161 18 C 0.060 3.940 19 C -0.524 4.524 20 H 0.101 0.899 21 C -0.179 4.179 22 N -0.451 5.451 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.195 1.195 26 H -0.180 1.180 27 C -0.164 4.164 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.244 0.756 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.263 0.737 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.496 2.040 8.926 16.309 hybrid contribution -0.749 0.529 -1.070 1.409 sum 12.747 2.569 7.856 15.192 Atomic orbital electron populations 1.22152 0.92769 1.03598 1.03789 1.22573 0.95405 0.96232 0.82826 0.89883 1.88916 1.40886 1.68154 1.32848 1.23701 0.87159 0.97037 0.95246 1.23881 1.01718 0.98510 0.97907 1.22564 0.89877 0.90073 0.91006 1.86545 1.69069 1.40649 1.39844 1.22273 0.97185 0.95700 0.88250 1.55112 1.23450 1.61441 1.46322 1.00672 0.72554 0.72851 0.72276 1.93507 1.69795 1.75191 1.59108 1.93510 1.75053 1.68867 1.60641 1.30227 1.14177 1.20648 1.07786 1.20463 1.00495 1.02246 0.93608 1.21144 0.94264 0.99380 0.99572 1.21664 0.96403 1.01209 0.96819 1.18030 0.93150 0.89932 0.92864 1.19889 0.94504 1.42815 0.95209 0.89898 1.26760 1.02562 0.93520 0.95040 1.69823 1.30895 1.34796 1.09552 0.85177 0.76035 0.78874 0.79627 1.18462 1.19466 1.18029 1.20835 0.94757 1.00587 1.00217 0.90652 0.91449 0.90179 0.90898 0.87180 0.86969 0.89483 0.75647 0.89061 0.90295 0.73669 0.85016 0.85752 0.87041 0.89818 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 8.41 71.98 0.61 -3.04 16 2 C 0.09 1.90 3.87 30.97 0.12 2.02 16 3 H 0.08 1.80 7.97 -2.38 -0.02 1.78 16 4 O -0.39 -8.80 11.19 -148.98 -1.67 -10.46 16 5 C 0.04 0.72 7.72 72.67 0.56 1.28 16 6 C -0.18 -2.90 6.04 31.89 0.19 -2.70 16 7 C 0.11 2.09 1.09 -9.81 -0.01 2.08 16 8 O -0.55 -9.97 12.99 -148.98 -1.93 -11.91 16 9 C 0.09 2.16 4.10 86.38 0.35 2.51 16 10 N -1.10 -25.25 5.58 -187.49 -1.05 -26.30 16 11 S 2.72 91.56 5.73 -56.49 -0.32 91.23 16 12 O -0.99 -35.88 17.27 -128.00 -2.21 -38.09 16 13 O -0.99 -38.85 16.73 -128.00 -2.14 -41.00 16 14 C -0.64 -26.34 5.94 22.22 0.13 -26.20 16 15 C -0.15 -6.02 9.53 22.46 0.21 -5.81 16 16 C -0.12 -5.41 10.02 22.22 0.22 -5.18 16 17 C -0.14 -7.02 8.70 22.73 0.20 -6.82 16 18 C 0.06 3.27 5.58 -21.29 -0.12 3.15 16 19 C -0.50 -25.43 9.05 23.46 0.21 -25.22 16 20 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 21 C 0.04 1.76 5.14 85.26 0.44 2.20 16 22 N -0.82 -41.43 10.95 21.83 0.24 -41.20 16 23 Si 0.98 36.54 29.60 68.60 2.03 38.57 16 24 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 25 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 26 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 27 C -0.14 -6.67 9.26 22.73 0.21 -6.46 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.54 6.53 -2.39 -0.02 1.52 16 30 H 0.08 1.76 7.01 -2.39 -0.02 1.74 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 1.22 8.08 -2.39 -0.02 1.20 16 34 H 0.09 1.52 7.87 -2.38 -0.02 1.50 16 35 H 0.39 4.42 7.83 -74.06 -0.58 3.84 16 36 H 0.09 2.30 6.12 -2.39 -0.01 2.28 16 37 H 0.08 2.00 7.04 -2.39 -0.02 1.98 16 38 H 0.43 6.66 7.44 -96.75 -0.72 5.94 16 39 H 0.13 4.64 7.60 -2.91 -0.02 4.62 16 40 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 42 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 43 H 0.11 5.07 7.60 -2.91 -0.02 5.05 16 Total: -1.00 -67.39 361.75 -3.96 -71.35 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.24 Total: 35.98 kcal Atomic # 6 Polarization: -71.52 SS G_CDS: 3.33 Total: -68.19 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.81 Total: -67.49 kcal Atomic # 8 Polarization: -93.50 SS G_CDS: -7.95 Total: -101.45 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Atomic # 16 Polarization: 91.56 SS G_CDS: -0.32 Total: 91.23 kcal Total: -67.39 -3.96 -71.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619500394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.480 kcal (2) G-P(sol) polarization free energy of solvation -67.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds