Wall clock time and date at job start Sat Apr 11 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.99499 * 2 1 4 4 O 1.43750 * 109.87774 * 238.91402 * 2 1 3 5 5 C 1.44374 * 106.97585 * 214.06300 * 4 2 1 6 6 C 1.55000 * 103.49165 * 40.06330 * 5 4 2 7 7 C 1.54101 * 109.88161 * 121.08741 * 2 1 3 8 8 O 1.42898 * 110.60331 * 240.18508 * 7 2 1 9 9 C 1.53002 * 110.48312 * 2.77258 * 7 2 1 10 10 N 1.46506 * 109.46796 * 176.22408 * 9 7 2 11 11 S 1.65601 * 119.99893 * 165.00171 * 10 9 7 12 12 O 1.42101 * 106.40243 * 311.45747 * 11 10 9 13 13 O 1.42102 * 106.40160 * 178.53973 * 11 10 9 14 14 C 1.76202 * 107.21926 * 65.00043 * 11 10 9 15 15 C 1.38648 * 119.87689 * 89.99818 * 14 11 10 16 16 C 1.38622 * 120.49874 * 180.25343 * 15 14 11 17 17 C 1.37640 * 120.24708 * 359.44738 * 16 15 14 18 18 C 1.40692 * 119.74551 * 0.54676 * 17 16 15 19 19 C 1.41392 * 120.24526 * 179.70143 * 18 17 16 20 20 H 1.08004 * 120.00006 * 155.17997 * 19 18 17 21 21 C 1.39948 * 120.00155 * 335.18611 * 19 18 17 22 22 N 1.30824 * 119.99465 * 342.36084 * 21 19 18 23 23 Si 1.86797 * 120.00067 * 162.36126 * 21 19 18 24 24 H 1.48493 * 109.47156 * 89.99995 * 23 21 19 25 25 H 1.48501 * 109.46917 * 209.99882 * 23 21 19 26 26 H 1.48501 * 109.47235 * 329.99665 * 23 21 19 27 27 C 1.37604 * 119.87412 * 269.97554 * 14 11 10 28 28 H 1.09004 * 109.46870 * 298.91778 * 1 2 3 29 29 H 1.09000 * 109.47125 * 58.91245 * 1 2 3 30 30 H 1.09003 * 109.47545 * 178.91685 * 1 2 3 31 31 H 1.08993 * 110.62009 * 281.56125 * 5 4 2 32 32 H 1.09001 * 110.61515 * 158.56124 * 5 4 2 33 33 H 1.09002 * 110.90276 * 204.77802 * 6 5 4 34 34 H 1.08997 * 110.93902 * 81.18673 * 6 5 4 35 35 H 0.96693 * 114.00310 * 181.91571 * 8 7 2 36 36 H 1.08997 * 109.47393 * 56.22724 * 9 7 2 37 37 H 1.09003 * 109.47288 * 296.22289 * 9 7 2 38 38 H 0.96995 * 119.99866 * 344.99422 * 10 9 7 39 39 H 1.07993 * 119.75136 * 359.97438 * 15 14 11 40 40 H 1.08003 * 119.87473 * 179.72730 * 16 15 14 41 41 H 1.08007 * 120.12372 * 180.25476 * 17 16 15 42 42 H 0.97008 * 119.99290 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.12657 * 0.04570 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6980 -1.1577 5 6 3.2378 -1.3642 -0.7648 6 6 2.9194 -1.8916 0.6575 7 6 2.0540 -0.7483 1.2410 8 8 2.8504 0.1182 2.0516 9 6 0.8898 -1.3190 2.0534 10 7 1.4146 -2.1006 3.1760 11 16 0.4167 -2.5247 4.4276 12 8 -0.2682 -1.3410 4.8137 13 8 1.2043 -3.2948 5.3254 14 6 -0.8037 -3.6154 3.7752 15 6 -0.5738 -4.9827 3.7656 16 6 -1.5228 -5.8521 3.2506 17 6 -2.7105 -5.3663 2.7528 18 6 -2.9546 -3.9807 2.7575 19 6 -4.1684 -3.4697 2.2429 20 1 -4.5410 -2.5156 2.5855 21 6 -4.8871 -4.2002 1.2898 22 7 -4.2999 -5.1599 0.6223 23 14 -6.6847 -3.8049 0.9708 24 1 -6.7839 -2.7824 -0.1015 25 1 -7.3948 -5.0380 0.5461 26 1 -7.3043 -3.2801 2.2141 27 6 -1.9816 -3.1071 3.2775 28 1 -0.3633 0.4970 0.8996 29 1 -0.3633 0.5306 -0.8801 30 1 -0.3634 -1.0275 -0.0194 31 1 4.0684 -0.6590 -0.7357 32 1 3.4583 -2.1908 -1.4402 33 1 3.8331 -2.0225 1.2373 34 1 2.3541 -2.8222 0.6104 35 1 3.2295 -0.3106 2.8309 36 1 0.2824 -1.9615 1.4159 37 1 0.2775 -0.5017 2.4344 38 1 2.3464 -2.3696 3.1860 39 1 0.3535 -5.3730 4.1582 40 1 -1.3313 -6.9150 3.2441 41 1 -3.4502 -6.0458 2.3558 42 1 -4.7979 -5.6660 -0.0386 43 1 -2.1585 -2.0417 3.2856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619500395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:51 Heat of formation + Delta-G solvation = -152.066629 kcal Electronic energy + Delta-G solvation = -28682.929245 eV Core-core repulsion = 24626.740903 eV Total energy + Delta-G solvation = -4056.188343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.44733 -37.69907 -36.89995 -36.67321 -35.39203 -34.47302 -33.89146 -32.07390 -31.03203 -30.13037 -29.85588 -26.42102 -25.53463 -24.76942 -22.63432 -21.95585 -21.05793 -20.07149 -19.24198 -18.04827 -17.72643 -17.14127 -16.27970 -16.04974 -15.83272 -15.62691 -15.44538 -15.20668 -14.80442 -14.50482 -14.28362 -13.63363 -13.52301 -13.40906 -13.02352 -12.63107 -12.59734 -12.34929 -12.13675 -11.96225 -11.83442 -11.68718 -11.65551 -11.59492 -11.44215 -11.39216 -11.35801 -11.05288 -10.94923 -10.68556 -10.65631 -10.19123 -9.88435 -9.81816 -9.72683 -9.38894 -9.25194 -8.10669 -7.75654 -6.97415 -4.58556 0.91928 2.12560 2.58561 2.97957 2.98984 3.05999 3.41939 3.65745 3.79300 3.79721 4.14038 4.24706 4.35490 4.40382 4.66989 4.90829 4.92916 5.04357 5.24836 5.29554 5.35215 5.43889 5.46781 5.56052 5.60026 5.69423 5.76546 5.92968 5.98856 6.01033 6.11930 6.25214 6.58974 6.68136 6.70025 6.77042 6.97039 7.02688 7.16151 7.31943 7.38047 7.67173 7.75618 7.88702 8.35096 8.62096 8.66492 9.97987 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.004326 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.689251 B = 6470.489814 C = 7955.647649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 H 0.083 0.917 4 O -0.368 6.368 5 C 0.051 3.949 6 C -0.186 4.186 7 C 0.100 3.900 8 O -0.547 6.547 9 C 0.096 3.904 10 N -1.124 6.124 11 S 2.690 3.310 12 O -0.969 6.969 13 O -0.975 6.975 14 C -0.632 4.632 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.093 3.907 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.076 3.924 22 N -0.793 5.793 23 Si 0.910 3.090 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.128 4.128 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.380 0.620 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.408 0.592 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.929 4.858 -2.813 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.101 0.899 4 O -0.287 6.287 5 C -0.026 4.026 6 C -0.224 4.224 7 C 0.057 3.943 8 O -0.354 6.354 9 C -0.030 4.030 10 N -0.882 5.882 11 S 2.786 3.214 12 O -0.959 6.959 13 O -0.966 6.966 14 C -0.724 4.724 15 C -0.168 4.168 16 C -0.140 4.140 17 C -0.136 4.136 18 C 0.089 3.911 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.142 4.142 22 N -0.418 5.418 23 Si 0.734 3.266 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.150 4.150 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.228 0.772 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.242 0.758 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.095 0.905 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.517 5.506 -2.803 12.197 hybrid contribution -0.439 -1.041 -0.205 1.148 sum 10.078 4.465 -3.008 11.426 Atomic orbital electron populations 1.22138 0.92325 1.04316 1.03338 1.22567 0.95593 0.96050 0.82487 0.89897 1.88949 1.39635 1.67743 1.32366 1.23472 0.87837 0.96421 0.94848 1.23883 1.01038 0.99717 0.97796 1.22729 0.90317 0.89736 0.91495 1.86518 1.68575 1.39675 1.40592 1.22181 0.96261 0.96111 0.88436 1.55651 1.23554 1.69734 1.39255 1.01651 0.73400 0.73838 0.72487 1.93536 1.74491 1.47354 1.80480 1.93527 1.70039 1.71946 1.61039 1.29691 1.14059 1.08685 1.19972 1.20064 1.00050 0.91270 1.05435 1.20815 0.95299 0.97685 1.00216 1.21648 0.96523 0.95977 0.99498 1.17669 0.91991 0.91487 0.89920 1.19610 1.04113 1.05501 1.19652 0.89877 1.25931 1.00462 0.93715 0.94127 1.69775 1.37544 1.17341 1.17156 0.86269 0.81561 0.78980 0.79799 1.19260 1.19988 1.18272 1.20782 0.92561 0.98423 1.03190 0.90216 0.91198 0.90487 0.91936 0.88714 0.89461 0.88685 0.77202 0.89286 0.88732 0.75840 0.87652 0.88384 0.85772 0.90528 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.40 37.16 0.31 -1.66 16 2 C 0.09 1.10 3.88 -26.16 -0.10 1.00 16 3 H 0.08 0.98 7.97 -51.93 -0.41 0.57 16 4 O -0.37 -4.74 11.19 -35.23 -0.39 -5.13 16 5 C 0.05 0.51 7.72 38.21 0.29 0.80 16 6 C -0.19 -1.81 5.68 -24.72 -0.14 -1.95 16 7 C 0.10 1.12 1.09 -89.09 -0.10 1.03 16 8 O -0.55 -5.96 12.98 -35.23 -0.46 -6.42 16 9 C 0.10 1.25 4.09 -4.04 -0.02 1.24 16 10 N -1.12 -14.59 5.50 -10.61 -0.06 -14.65 16 11 S 2.69 47.34 5.73 -107.50 -0.62 46.72 16 12 O -0.97 -19.39 16.74 -57.17 -0.96 -20.35 16 13 O -0.98 -18.79 17.27 -57.17 -0.99 -19.77 16 14 C -0.63 -13.17 5.94 -39.66 -0.24 -13.40 16 15 C -0.15 -3.09 9.53 -39.29 -0.37 -3.46 16 16 C -0.12 -2.63 10.02 -39.66 -0.40 -3.03 16 17 C -0.12 -2.82 8.70 -38.87 -0.34 -3.16 16 18 C 0.09 2.31 5.57 -106.83 -0.60 1.72 16 19 C -0.46 -11.39 9.05 -37.74 -0.34 -11.73 16 20 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 21 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 22 N -0.79 -19.05 10.97 55.55 0.61 -18.44 16 23 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 24 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.13 -2.93 9.26 -38.87 -0.36 -3.29 16 28 H 0.08 0.90 6.93 -51.93 -0.36 0.54 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.01 6.61 -51.93 -0.34 0.67 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 35 H 0.38 3.05 8.36 45.56 0.38 3.43 16 36 H 0.09 1.24 6.60 -51.93 -0.34 0.90 16 37 H 0.09 1.29 6.56 -51.93 -0.34 0.94 16 38 H 0.41 4.08 7.72 -34.47 -0.27 3.81 16 39 H 0.11 2.00 7.60 -52.49 -0.40 1.60 16 40 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.12 3.06 6.18 -52.48 -0.32 2.74 16 42 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 43 H 0.11 2.42 7.60 -52.49 -0.40 2.02 16 LS Contribution 362.13 15.07 5.46 5.46 Total: -1.00 -30.77 362.13 -9.79 -40.57 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -4.88 Total: 13.66 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: -2.48 Total: -34.21 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.55 Total: -33.09 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -2.80 Total: -51.68 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 47.34 SS G_CDS: -0.62 Total: 46.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.77 -9.79 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619500395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.502 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds