Wall clock time and date at job start Sat Apr 11 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.99499 * 2 1 4 4 O 1.43750 * 109.87774 * 238.91402 * 2 1 3 5 5 C 1.44374 * 106.97585 * 214.06300 * 4 2 1 6 6 C 1.55000 * 103.49165 * 40.06330 * 5 4 2 7 7 C 1.54101 * 109.88161 * 121.08741 * 2 1 3 8 8 O 1.42898 * 110.60331 * 240.18508 * 7 2 1 9 9 C 1.53002 * 110.48312 * 2.77258 * 7 2 1 10 10 N 1.46506 * 109.46796 * 176.22408 * 9 7 2 11 11 S 1.65601 * 119.99893 * 165.00171 * 10 9 7 12 12 O 1.42101 * 106.40243 * 311.45747 * 11 10 9 13 13 O 1.42102 * 106.40160 * 178.53973 * 11 10 9 14 14 C 1.76202 * 107.21926 * 65.00043 * 11 10 9 15 15 C 1.38648 * 119.87689 * 89.99818 * 14 11 10 16 16 C 1.38622 * 120.49874 * 180.25343 * 15 14 11 17 17 C 1.37640 * 120.24708 * 359.44738 * 16 15 14 18 18 C 1.40692 * 119.74551 * 0.54676 * 17 16 15 19 19 C 1.41392 * 120.24526 * 179.70143 * 18 17 16 20 20 H 1.08004 * 120.00006 * 155.17997 * 19 18 17 21 21 C 1.39948 * 120.00155 * 335.18611 * 19 18 17 22 22 N 1.30824 * 119.99465 * 342.36084 * 21 19 18 23 23 Si 1.86797 * 120.00067 * 162.36126 * 21 19 18 24 24 H 1.48493 * 109.47156 * 89.99995 * 23 21 19 25 25 H 1.48501 * 109.46917 * 209.99882 * 23 21 19 26 26 H 1.48501 * 109.47235 * 329.99665 * 23 21 19 27 27 C 1.37604 * 119.87412 * 269.97554 * 14 11 10 28 28 H 1.09004 * 109.46870 * 298.91778 * 1 2 3 29 29 H 1.09000 * 109.47125 * 58.91245 * 1 2 3 30 30 H 1.09003 * 109.47545 * 178.91685 * 1 2 3 31 31 H 1.08993 * 110.62009 * 281.56125 * 5 4 2 32 32 H 1.09001 * 110.61515 * 158.56124 * 5 4 2 33 33 H 1.09002 * 110.90276 * 204.77802 * 6 5 4 34 34 H 1.08997 * 110.93902 * 81.18673 * 6 5 4 35 35 H 0.96693 * 114.00310 * 181.91571 * 8 7 2 36 36 H 1.08997 * 109.47393 * 56.22724 * 9 7 2 37 37 H 1.09003 * 109.47288 * 296.22289 * 9 7 2 38 38 H 0.96995 * 119.99866 * 344.99422 * 10 9 7 39 39 H 1.07993 * 119.75136 * 359.97438 * 15 14 11 40 40 H 1.08003 * 119.87473 * 179.72730 * 16 15 14 41 41 H 1.08007 * 120.12372 * 180.25476 * 17 16 15 42 42 H 0.97008 * 119.99290 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.12657 * 0.04570 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6980 -1.1577 5 6 3.2378 -1.3642 -0.7648 6 6 2.9194 -1.8916 0.6575 7 6 2.0540 -0.7483 1.2410 8 8 2.8504 0.1182 2.0516 9 6 0.8898 -1.3190 2.0534 10 7 1.4146 -2.1006 3.1760 11 16 0.4167 -2.5247 4.4276 12 8 -0.2682 -1.3410 4.8137 13 8 1.2043 -3.2948 5.3254 14 6 -0.8037 -3.6154 3.7752 15 6 -0.5738 -4.9827 3.7656 16 6 -1.5228 -5.8521 3.2506 17 6 -2.7105 -5.3663 2.7528 18 6 -2.9546 -3.9807 2.7575 19 6 -4.1684 -3.4697 2.2429 20 1 -4.5410 -2.5156 2.5855 21 6 -4.8871 -4.2002 1.2898 22 7 -4.2999 -5.1599 0.6223 23 14 -6.6847 -3.8049 0.9708 24 1 -6.7839 -2.7824 -0.1015 25 1 -7.3948 -5.0380 0.5461 26 1 -7.3043 -3.2801 2.2141 27 6 -1.9816 -3.1071 3.2775 28 1 -0.3633 0.4970 0.8996 29 1 -0.3633 0.5306 -0.8801 30 1 -0.3634 -1.0275 -0.0194 31 1 4.0684 -0.6590 -0.7357 32 1 3.4583 -2.1908 -1.4402 33 1 3.8331 -2.0225 1.2373 34 1 2.3541 -2.8222 0.6104 35 1 3.2295 -0.3106 2.8309 36 1 0.2824 -1.9615 1.4159 37 1 0.2775 -0.5017 2.4344 38 1 2.3464 -2.3696 3.1860 39 1 0.3535 -5.3730 4.1582 40 1 -1.3313 -6.9150 3.2441 41 1 -3.4502 -6.0458 2.3558 42 1 -4.7979 -5.6660 -0.0386 43 1 -2.1585 -2.0417 3.2856 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619500395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:50 Heat of formation + Delta-G solvation = -176.105390 kcal Electronic energy + Delta-G solvation = -28683.971644 eV Core-core repulsion = 24626.740903 eV Total energy + Delta-G solvation = -4057.230742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34658 -39.44472 -38.30485 -37.73998 -36.93568 -35.67480 -35.50987 -33.02896 -31.90825 -31.89496 -31.59128 -27.43684 -27.32184 -25.73259 -23.68006 -23.44979 -22.80551 -21.03697 -20.67535 -19.65266 -18.82683 -18.35753 -17.73384 -17.22751 -17.02739 -16.88998 -16.60317 -16.48280 -16.35397 -15.81724 -15.38911 -15.20027 -15.05322 -14.53840 -14.30930 -13.93743 -13.71604 -13.49336 -13.39802 -13.32597 -13.22563 -13.09079 -13.05539 -13.02845 -12.99443 -12.80447 -12.61220 -12.52592 -12.22738 -12.18860 -11.59518 -11.56378 -11.37392 -11.13361 -11.06238 -10.74425 -10.50751 -9.85823 -9.55103 -8.72987 -6.44316 -0.53752 0.40099 0.84929 1.38159 1.44506 1.52403 2.05553 2.17719 2.55015 2.74106 2.82764 2.95145 3.29800 3.44253 3.51193 3.55484 3.81768 4.06840 4.18082 4.29606 4.30488 4.36222 4.44374 4.49160 4.56360 4.65438 4.66409 4.81653 4.84766 4.90237 4.96353 5.01699 5.03469 5.06891 5.20804 5.26631 5.41040 5.56156 5.83684 5.89305 5.94572 6.00754 6.10632 6.53223 6.66662 6.80704 6.85162 8.24712 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010411 B = 0.004326 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.689251 B = 6470.489814 C = 7955.647649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 H 0.086 0.914 4 O -0.390 6.390 5 C 0.045 3.955 6 C -0.184 4.184 7 C 0.108 3.892 8 O -0.552 6.552 9 C 0.094 3.906 10 N -1.101 6.101 11 S 2.725 3.275 12 O -0.990 6.990 13 O -0.984 6.984 14 C -0.640 4.640 15 C -0.148 4.148 16 C -0.124 4.124 17 C -0.141 4.141 18 C 0.064 3.936 19 C -0.496 4.496 20 H 0.079 0.921 21 C 0.040 3.960 22 N -0.821 5.821 23 Si 0.978 3.022 24 H -0.261 1.261 25 H -0.265 1.265 26 H -0.261 1.261 27 C -0.143 4.143 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.393 0.607 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.427 0.573 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.111 0.889 42 H 0.291 0.709 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.516 4.988 -2.789 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.031 3.969 3 H 0.104 0.896 4 O -0.310 6.310 5 C -0.031 4.031 6 C -0.222 4.222 7 C 0.065 3.935 8 O -0.361 6.361 9 C -0.033 4.033 10 N -0.864 5.864 11 S 2.817 3.183 12 O -0.980 6.980 13 O -0.975 6.975 14 C -0.729 4.729 15 C -0.169 4.169 16 C -0.143 4.143 17 C -0.161 4.161 18 C 0.061 3.939 19 C -0.525 4.525 20 H 0.097 0.903 21 C -0.175 4.175 22 N -0.446 5.446 23 Si 0.799 3.201 24 H -0.185 1.185 25 H -0.190 1.190 26 H -0.185 1.185 27 C -0.164 4.164 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.106 0.894 35 H 0.244 0.756 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.264 0.736 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.114 5.595 -2.773 13.629 hybrid contribution -0.771 -1.063 -0.190 1.327 sum 11.343 4.532 -2.963 12.569 Atomic orbital electron populations 1.22141 0.92963 1.03354 1.03798 1.22574 0.95227 0.96316 0.82828 0.89593 1.88927 1.40969 1.68144 1.32964 1.23693 0.87154 0.97017 0.95242 1.23907 1.01770 0.98520 0.97973 1.22557 0.89889 0.90162 0.90892 1.86508 1.68342 1.39950 1.41277 1.22240 0.97186 0.95672 0.88171 1.55145 1.23857 1.69102 1.38343 1.00670 0.72575 0.72657 0.72408 1.93511 1.75403 1.47856 1.81223 1.93509 1.69777 1.72263 1.61918 1.30238 1.14441 1.09727 1.18469 1.20452 1.00674 0.91297 1.04449 1.21137 0.94518 0.99377 0.99251 1.21641 0.97575 0.95689 1.01169 1.18016 0.92811 0.92330 0.90737 1.19837 1.05312 1.06175 1.21138 0.90265 1.26684 1.04196 0.93321 0.93341 1.69811 1.39133 1.18081 1.17583 0.85253 0.76280 0.79086 0.79510 1.18536 1.18969 1.18463 1.20863 0.93203 0.98385 1.03928 0.89828 0.90765 0.92097 0.90684 0.87421 0.86636 0.89397 0.75644 0.90420 0.89412 0.73586 0.85036 0.85743 0.87087 0.89792 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.40 71.98 0.60 -3.41 16 2 C 0.09 2.06 3.88 30.97 0.12 2.18 16 3 H 0.09 1.93 7.97 -2.39 -0.02 1.91 16 4 O -0.39 -9.66 11.19 -148.98 -1.67 -11.33 16 5 C 0.04 0.80 7.72 72.67 0.56 1.36 16 6 C -0.18 -3.10 5.68 31.90 0.18 -2.91 16 7 C 0.11 2.24 1.09 -9.80 -0.01 2.22 16 8 O -0.55 -10.57 12.98 -148.98 -1.93 -12.51 16 9 C 0.09 2.34 4.09 86.38 0.35 2.69 16 10 N -1.10 -26.31 5.50 -187.47 -1.03 -27.35 16 11 S 2.72 91.71 5.73 -56.49 -0.32 91.39 16 12 O -0.99 -38.74 16.74 -128.00 -2.14 -40.88 16 13 O -0.98 -35.49 17.27 -128.00 -2.21 -37.70 16 14 C -0.64 -26.36 5.94 22.22 0.13 -26.23 16 15 C -0.15 -6.03 9.53 22.46 0.21 -5.82 16 16 C -0.12 -5.35 10.02 22.22 0.22 -5.13 16 17 C -0.14 -6.99 8.70 22.73 0.20 -6.79 16 18 C 0.06 3.31 5.57 -21.29 -0.12 3.19 16 19 C -0.50 -25.51 9.05 23.46 0.21 -25.30 16 20 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 21 C 0.04 1.93 5.14 85.26 0.44 2.37 16 22 N -0.82 -40.35 10.97 21.83 0.24 -40.11 16 23 Si 0.98 36.50 29.59 68.60 2.03 38.53 16 24 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 25 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 26 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 27 C -0.14 -6.67 9.26 22.73 0.21 -6.46 16 28 H 0.08 1.91 6.93 -2.39 -0.02 1.89 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.66 6.61 -2.39 -0.02 1.64 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.12 1.28 8.08 -2.39 -0.02 1.26 16 34 H 0.09 1.63 7.87 -2.39 -0.02 1.62 16 35 H 0.39 4.99 8.36 -74.06 -0.62 4.37 16 36 H 0.08 2.17 6.60 -2.39 -0.02 2.15 16 37 H 0.09 2.34 6.56 -2.39 -0.02 2.33 16 38 H 0.43 7.15 7.72 -96.75 -0.75 6.40 16 39 H 0.13 4.62 7.60 -2.91 -0.02 4.60 16 40 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 41 H 0.11 5.69 6.18 -2.91 -0.02 5.67 16 42 H 0.29 12.92 8.30 -92.70 -0.77 12.15 16 43 H 0.11 5.06 7.60 -2.91 -0.02 5.04 16 Total: -1.00 -66.40 362.13 -4.02 -70.42 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.30 Total: 37.56 kcal Atomic # 6 Polarization: -71.34 SS G_CDS: 3.32 Total: -68.02 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.79 Total: -67.46 kcal Atomic # 8 Polarization: -94.46 SS G_CDS: -7.95 Total: -102.41 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 16 Polarization: 91.71 SS G_CDS: -0.32 Total: 91.39 kcal Total: -66.40 -4.02 -70.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619500395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.685 kcal (2) G-P(sol) polarization free energy of solvation -66.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds