Wall clock time and date at job start Sat Apr 11 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47135 * 2 1 4 4 C 1.52996 * 109.47447 * 119.99854 * 2 1 3 5 5 S 1.81399 * 109.47488 * 184.99992 * 4 2 1 6 6 C 1.81394 * 101.92341 * 180.02562 * 5 4 2 7 7 O 1.42105 * 108.57584 * 65.51353 * 5 4 2 8 8 O 1.42102 * 108.57785 * 294.49097 * 5 4 2 9 9 N 1.46497 * 109.47225 * 240.00254 * 2 1 3 10 10 C 1.34776 * 120.00263 * 84.99324 * 9 2 1 11 11 O 1.21278 * 120.00055 * 0.02562 * 10 9 2 12 12 C 1.50702 * 119.99999 * 180.02562 * 10 9 2 13 13 C 1.50704 * 109.46787 * 180.02562 * 12 10 9 14 14 C 1.38301 * 119.92833 * 269.72237 * 13 12 10 15 15 C 1.38104 * 120.07002 * 179.72441 * 14 13 12 16 16 C 1.38881 * 119.92408 * 0.57962 * 15 14 13 17 17 O 1.35753 * 120.06384 * 179.68098 * 16 15 14 18 18 C 1.34831 * 116.99920 * 174.48344 * 17 16 15 19 19 H 1.08003 * 120.00063 * 5.05185 * 18 17 16 20 20 C 1.38651 * 120.00035 * 185.05813 * 18 17 16 21 21 N 1.31553 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00088 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46789 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47181 * 119.99499 * 22 20 18 25 25 H 1.48493 * 109.47066 * 239.99853 * 22 20 18 26 26 C 1.38874 * 119.86456 * 359.69623 * 16 15 14 27 27 C 1.38098 * 119.93294 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47228 * 59.99895 * 1 2 3 29 29 H 1.09007 * 109.46701 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46928 * 299.99827 * 1 2 3 31 31 H 1.09005 * 109.47197 * 65.00228 * 4 2 1 32 32 H 1.09002 * 109.47443 * 305.00499 * 4 2 1 33 33 H 1.08998 * 109.47248 * 300.00362 * 6 5 4 34 34 H 1.09003 * 109.46983 * 60.00376 * 6 5 4 35 35 H 1.09001 * 109.47034 * 179.97438 * 6 5 4 36 36 H 0.96998 * 120.00242 * 264.99829 * 9 2 1 37 37 H 1.08998 * 109.47292 * 299.99946 * 12 10 9 38 38 H 1.09001 * 109.47150 * 60.00650 * 12 10 9 39 39 H 1.08001 * 119.96689 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.03571 * 180.27564 * 15 14 13 41 41 H 0.96996 * 120.00613 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.03339 * 179.97438 * 26 16 15 43 43 H 1.08001 * 119.96542 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 16 3.8479 -0.5932 1.3256 6 6 4.2236 -1.4991 2.8516 7 8 4.1977 0.7716 1.5109 8 8 4.3992 -1.3079 0.2280 9 7 2.0184 -0.6905 -1.1962 10 6 2.1470 -0.0182 -2.3572 11 8 1.8589 1.1586 -2.4116 12 6 2.6488 -0.7288 -3.5878 13 6 2.7001 0.2398 -4.7412 14 6 1.5996 0.3904 -5.5652 15 6 1.6414 1.2813 -6.6196 16 6 2.7943 2.0176 -6.8593 17 8 2.8407 2.8894 -7.8988 18 6 3.9456 3.6545 -8.0072 19 1 4.7768 3.5011 -7.3349 20 6 4.0147 4.6384 -8.9817 21 7 3.0024 4.8250 -9.8009 22 14 5.5458 5.6980 -9.1323 23 1 6.5331 5.2904 -8.1007 24 1 6.1386 5.5221 -10.4823 25 1 5.1824 7.1239 -8.9331 26 6 3.8996 1.8599 -6.0334 27 6 3.8496 0.9716 -4.9772 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7518 -1.7715 1.2056 32 1 1.6054 -0.2617 2.1370 33 1 3.7248 -1.0171 3.6924 34 1 3.8711 -2.5265 2.7603 35 1 5.3007 -1.4984 3.0187 36 1 2.2491 -1.6317 -1.1527 37 1 3.6479 -1.1212 -3.3987 38 1 1.9759 -1.5506 -3.8326 39 1 0.7052 -0.1864 -5.3815 40 1 0.7801 1.4017 -7.2601 41 1 3.0508 5.5131 -10.4829 42 1 4.7977 2.4308 -6.2175 43 1 4.7090 0.8483 -4.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733244990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:18 Heat of formation + Delta-G solvation = -107.825469 kcal Electronic energy + Delta-G solvation = -26962.708553 eV Core-core repulsion = 22908.438651 eV Total energy + Delta-G solvation = -4054.269902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.94925 -38.77936 -37.37460 -36.79143 -36.37192 -35.92830 -32.50596 -32.06851 -30.83802 -30.13216 -30.03125 -28.16946 -26.55373 -25.04210 -22.38264 -21.86141 -20.89799 -20.09298 -19.31277 -17.87985 -17.37553 -17.06699 -16.97735 -16.77725 -16.29182 -15.92333 -15.17746 -14.65741 -14.42938 -14.23286 -13.91607 -13.82965 -13.77212 -13.73269 -13.50462 -13.28597 -13.23926 -13.16424 -12.60330 -12.47368 -12.43254 -12.39355 -12.35820 -11.79522 -11.61800 -11.48563 -11.36038 -11.19106 -10.94692 -10.76534 -10.65436 -10.50172 -10.34171 -9.67987 -9.27257 -9.21845 -8.73750 -8.03886 -7.05930 -6.36196 -3.94361 -0.52965 2.25294 2.34567 2.36808 2.80136 3.04915 3.15985 3.19560 3.21362 3.26508 3.53931 3.92115 4.05062 4.15062 4.25098 4.49906 4.63586 4.70523 4.94200 4.96923 5.08949 5.09676 5.18403 5.31288 5.36925 5.42819 5.45364 5.64013 5.79701 5.86452 5.87999 5.95599 6.28326 6.32504 6.53091 6.81238 7.02485 7.15877 7.34171 7.43876 7.49081 7.55474 7.94876 8.09727 8.33731 9.09972 9.81206 10.82207 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.002287 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.743822 B =12241.659991 C =13035.113618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.104 0.896 4 C -0.626 4.626 5 S 2.418 3.582 6 C -0.660 4.660 7 O -0.931 6.931 8 O -0.927 6.927 9 N -0.746 5.746 10 C 0.514 3.486 11 O -0.515 6.515 12 C -0.081 4.081 13 C -0.169 4.169 14 C -0.060 4.060 15 C -0.192 4.192 16 C 0.156 3.844 17 O -0.180 6.180 18 C -0.389 4.389 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.865 5.865 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.404 0.596 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.268 0.732 42 H 0.127 0.873 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.986 -17.517 26.808 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.122 0.878 4 C -0.754 4.754 5 S 2.599 3.401 6 C -0.809 4.809 7 O -0.928 6.928 8 O -0.924 6.924 9 N -0.402 5.402 10 C 0.302 3.698 11 O -0.388 6.388 12 C -0.121 4.121 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.465 4.465 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.500 5.500 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.251 4.251 27 C -0.074 4.074 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.239 0.761 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.078 0.922 42 H 0.144 0.856 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.812 -16.011 25.797 30.415 hybrid contribution 0.315 -0.405 0.821 0.968 sum -1.497 -16.416 26.618 31.309 Atomic orbital electron populations 1.22128 0.93501 1.02484 1.03348 1.20471 0.96227 0.97226 0.81218 0.87791 1.30722 1.26769 1.10751 1.07173 1.08046 0.78196 0.76425 0.77451 1.30336 1.12601 1.15342 1.22650 1.93641 1.81160 1.31823 1.86206 1.93610 1.75373 1.74571 1.48803 1.46356 1.69622 1.14547 1.09697 1.21113 0.76875 0.87657 0.84194 1.90754 1.47748 1.15805 1.84540 1.20426 1.02943 0.97861 0.90823 1.18649 0.95971 1.03715 0.98730 1.20389 0.96411 0.96957 0.94070 1.20143 0.97353 1.01886 1.01741 1.19382 0.93029 0.90002 0.87310 1.83975 1.41045 1.44285 1.39020 1.21382 0.93394 1.13663 1.18088 0.89031 1.25280 0.98905 0.96957 0.95467 1.70048 1.30160 1.31988 1.17813 0.85649 0.79943 0.79335 0.78519 1.19084 1.20221 1.20196 1.21112 1.00090 1.04488 0.99393 1.20550 0.96463 0.94568 0.95861 0.90944 0.92123 0.91459 0.84379 0.83573 0.85419 0.85351 0.85156 0.76088 0.88437 0.88879 0.87434 0.86605 0.92181 0.85581 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.48 37.16 0.35 -0.83 16 2 C 0.15 1.33 2.57 -67.93 -0.17 1.15 16 3 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.63 -2.32 5.33 37.16 0.20 -2.12 16 5 S 2.42 15.10 5.28 -107.50 -0.57 14.53 16 6 C -0.66 -1.37 10.62 101.05 1.07 -0.30 16 7 O -0.93 -10.54 18.10 -57.83 -1.05 -11.58 16 8 O -0.93 -8.86 16.90 -57.83 -0.98 -9.84 16 9 N -0.75 -7.44 4.16 -53.81 -0.22 -7.66 16 10 C 0.51 7.46 7.79 -10.98 -0.09 7.38 16 11 O -0.52 -9.92 15.70 5.56 0.09 -9.83 16 12 C -0.08 -1.10 5.83 -29.03 -0.17 -1.26 16 13 C -0.17 -3.12 4.38 -104.57 -0.46 -3.58 16 14 C -0.06 -1.15 9.69 -39.61 -0.38 -1.53 16 15 C -0.19 -4.34 9.99 -39.39 -0.39 -4.73 16 16 C 0.16 4.02 6.65 -39.11 -0.26 3.76 16 17 O -0.18 -5.37 9.76 0.04 0.00 -5.37 16 18 C -0.39 -11.36 9.49 30.88 0.29 -11.07 16 19 H 0.09 2.50 5.20 -52.48 -0.27 2.23 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -26.20 13.67 55.48 0.76 -25.44 16 22 Si 0.94 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.23 -5.44 9.17 -39.40 -0.36 -5.81 16 27 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.14 0.06 8.14 -51.92 -0.42 -0.36 16 32 H 0.15 0.13 8.14 -51.92 -0.42 -0.29 16 33 H 0.13 0.04 8.14 -51.92 -0.42 -0.39 16 34 H 0.13 -0.01 8.14 -51.92 -0.42 -0.44 16 35 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 36 H 0.40 2.80 8.20 -40.82 -0.33 2.47 16 37 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 38 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.13 2.96 5.64 -52.49 -0.30 2.66 16 43 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -41.46 381.02 -8.02 -49.48 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.92 Total: 3.06 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.85 Total: -19.48 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.53 Total: -33.10 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.94 Total: -36.62 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 15.10 SS G_CDS: -0.57 Total: 14.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -41.46 -8.02 -49.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733244990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.341 kcal (2) G-P(sol) polarization free energy of solvation -41.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds