Wall clock time and date at job start Sat Apr 11 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47135 * 2 1 4 4 C 1.52996 * 109.47447 * 119.99854 * 2 1 3 5 5 S 1.81399 * 109.47488 * 184.99992 * 4 2 1 6 6 C 1.81394 * 101.92341 * 180.02562 * 5 4 2 7 7 O 1.42105 * 108.57584 * 65.51353 * 5 4 2 8 8 O 1.42102 * 108.57785 * 294.49097 * 5 4 2 9 9 N 1.46497 * 109.47225 * 240.00254 * 2 1 3 10 10 C 1.34776 * 120.00263 * 84.99324 * 9 2 1 11 11 O 1.21278 * 120.00055 * 0.02562 * 10 9 2 12 12 C 1.50702 * 119.99999 * 180.02562 * 10 9 2 13 13 C 1.50704 * 109.46787 * 180.02562 * 12 10 9 14 14 C 1.38301 * 119.92833 * 269.72237 * 13 12 10 15 15 C 1.38104 * 120.07002 * 179.72441 * 14 13 12 16 16 C 1.38881 * 119.92408 * 0.57962 * 15 14 13 17 17 O 1.35753 * 120.06384 * 179.68098 * 16 15 14 18 18 C 1.34831 * 116.99920 * 174.48344 * 17 16 15 19 19 H 1.08003 * 120.00063 * 5.05185 * 18 17 16 20 20 C 1.38651 * 120.00035 * 185.05813 * 18 17 16 21 21 N 1.31553 * 120.00207 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00088 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46789 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47181 * 119.99499 * 22 20 18 25 25 H 1.48493 * 109.47066 * 239.99853 * 22 20 18 26 26 C 1.38874 * 119.86456 * 359.69623 * 16 15 14 27 27 C 1.38098 * 119.93294 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47228 * 59.99895 * 1 2 3 29 29 H 1.09007 * 109.46701 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46928 * 299.99827 * 1 2 3 31 31 H 1.09005 * 109.47197 * 65.00228 * 4 2 1 32 32 H 1.09002 * 109.47443 * 305.00499 * 4 2 1 33 33 H 1.08998 * 109.47248 * 300.00362 * 6 5 4 34 34 H 1.09003 * 109.46983 * 60.00376 * 6 5 4 35 35 H 1.09001 * 109.47034 * 179.97438 * 6 5 4 36 36 H 0.96998 * 120.00242 * 264.99829 * 9 2 1 37 37 H 1.08998 * 109.47292 * 299.99946 * 12 10 9 38 38 H 1.09001 * 109.47150 * 60.00650 * 12 10 9 39 39 H 1.08001 * 119.96689 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.03571 * 180.27564 * 15 14 13 41 41 H 0.96996 * 120.00613 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.03339 * 179.97438 * 26 16 15 43 43 H 1.08001 * 119.96542 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 16 3.8479 -0.5932 1.3256 6 6 4.2236 -1.4991 2.8516 7 8 4.1977 0.7716 1.5109 8 8 4.3992 -1.3079 0.2280 9 7 2.0184 -0.6905 -1.1962 10 6 2.1470 -0.0182 -2.3572 11 8 1.8589 1.1586 -2.4116 12 6 2.6488 -0.7288 -3.5878 13 6 2.7001 0.2398 -4.7412 14 6 1.5996 0.3904 -5.5652 15 6 1.6414 1.2813 -6.6196 16 6 2.7943 2.0176 -6.8593 17 8 2.8407 2.8894 -7.8988 18 6 3.9456 3.6545 -8.0072 19 1 4.7768 3.5011 -7.3349 20 6 4.0147 4.6384 -8.9817 21 7 3.0024 4.8250 -9.8009 22 14 5.5458 5.6980 -9.1323 23 1 6.5331 5.2904 -8.1007 24 1 6.1386 5.5221 -10.4823 25 1 5.1824 7.1239 -8.9331 26 6 3.8996 1.8599 -6.0334 27 6 3.8496 0.9716 -4.9772 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7518 -1.7715 1.2056 32 1 1.6054 -0.2617 2.1370 33 1 3.7248 -1.0171 3.6924 34 1 3.8711 -2.5265 2.7603 35 1 5.3007 -1.4984 3.0187 36 1 2.2491 -1.6317 -1.1527 37 1 3.6479 -1.1212 -3.3987 38 1 1.9759 -1.5506 -3.8326 39 1 0.7052 -0.1864 -5.3815 40 1 0.7801 1.4017 -7.2601 41 1 3.0508 5.5131 -10.4829 42 1 4.7977 2.4308 -6.2175 43 1 4.7090 0.8483 -4.3349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733244990.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:17 Heat of formation + Delta-G solvation = -141.781160 kcal Electronic energy + Delta-G solvation = -26964.180982 eV Core-core repulsion = 22908.438651 eV Total energy + Delta-G solvation = -4055.742331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.17460 -40.48321 -38.35668 -37.95449 -37.16658 -36.83211 -34.40980 -33.35403 -32.07188 -31.77310 -30.38770 -28.62388 -28.17401 -26.98071 -23.64252 -23.37880 -22.09461 -21.37813 -19.85664 -19.80196 -18.86851 -18.19676 -17.68210 -17.59127 -16.86192 -16.63999 -16.57622 -16.31322 -16.00352 -15.76636 -15.51233 -15.16364 -14.70950 -14.52481 -14.37318 -14.26733 -14.07190 -13.87603 -13.80962 -13.61736 -13.59167 -13.08508 -13.02896 -12.97847 -12.96286 -12.77598 -12.48963 -12.28913 -12.25285 -12.18905 -12.10890 -11.93029 -11.37660 -11.18695 -10.94267 -10.75387 -10.16785 -9.77163 -8.90742 -8.48214 -6.16185 -0.92378 0.60642 0.66266 1.32922 1.41609 1.51849 1.69739 1.90060 2.16544 2.19291 2.74947 2.83821 3.13848 3.18179 3.47068 3.51831 3.85821 3.93313 4.04556 4.11392 4.14693 4.18111 4.20237 4.29706 4.46016 4.49371 4.59118 4.67953 4.71345 4.77222 4.81139 4.98046 5.01674 5.08979 5.14614 5.27342 5.29555 5.46439 5.55816 5.70937 5.78001 6.02389 6.21968 6.58041 6.96439 7.32714 7.77385 8.75468 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.002287 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.743822 B =12241.659991 C =13035.113618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 H 0.066 0.934 4 C -0.604 4.604 5 S 2.398 3.602 6 C -0.634 4.634 7 O -1.000 7.000 8 O -0.972 6.972 9 N -0.726 5.726 10 C 0.511 3.489 11 O -0.576 6.576 12 C -0.082 4.082 13 C -0.146 4.146 14 C -0.055 4.055 15 C -0.204 4.204 16 C 0.112 3.888 17 O -0.232 6.232 18 C -0.414 4.414 19 H 0.098 0.902 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.020 2.980 23 H -0.255 1.255 24 H -0.264 1.264 25 H -0.268 1.268 26 C -0.244 4.244 27 C -0.065 4.065 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.185 0.815 32 H 0.183 0.817 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.129 0.871 36 H 0.422 0.578 37 H 0.122 0.878 38 H 0.138 0.862 39 H 0.151 0.849 40 H 0.115 0.885 41 H 0.273 0.727 42 H 0.116 0.884 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 -21.247 31.001 37.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.084 0.916 4 C -0.734 4.734 5 S 2.586 3.414 6 C -0.787 4.787 7 O -0.998 6.998 8 O -0.969 6.969 9 N -0.382 5.382 10 C 0.299 3.701 11 O -0.454 6.454 12 C -0.121 4.121 13 C -0.147 4.147 14 C -0.073 4.073 15 C -0.223 4.223 16 C 0.062 3.938 17 O -0.139 6.139 18 C -0.490 4.490 19 H 0.115 0.885 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.839 3.161 23 H -0.178 1.178 24 H -0.188 1.188 25 H -0.193 1.193 26 C -0.263 4.263 27 C -0.083 4.083 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.203 0.797 32 H 0.201 0.799 33 H 0.172 0.828 34 H 0.180 0.820 35 H 0.148 0.852 36 H 0.261 0.739 37 H 0.140 0.860 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.981 -19.814 30.028 36.030 hybrid contribution 0.234 0.426 -0.116 0.500 sum -1.747 -19.388 29.912 35.689 Atomic orbital electron populations 1.22102 0.92336 1.03980 1.02634 1.20629 0.97199 0.96189 0.82565 0.91573 1.30563 1.23522 1.13414 1.05907 1.08096 0.79352 0.75284 0.78640 1.30087 1.13140 1.16279 1.19187 1.93567 1.82882 1.35919 1.87400 1.93548 1.76903 1.74586 1.51882 1.46173 1.67867 1.15252 1.08930 1.21191 0.76358 0.86940 0.85587 1.90754 1.50771 1.18276 1.85602 1.20571 1.05704 0.97423 0.88404 1.19262 0.94322 1.02202 0.98886 1.20878 0.98208 0.95847 0.92335 1.20458 0.96508 1.02371 1.02974 1.19927 0.95068 0.90831 0.87948 1.83935 1.41924 1.46414 1.41617 1.21843 0.93861 1.14475 1.18851 0.88499 1.26602 1.02780 0.98061 0.94648 1.70185 1.32963 1.33533 1.19206 0.84521 0.75357 0.77046 0.79188 1.17820 1.18830 1.19294 1.21200 0.99250 1.05488 1.00357 1.20922 0.98432 0.93903 0.95036 0.94499 0.89383 0.89511 0.79694 0.79946 0.82795 0.81955 0.85200 0.73934 0.86010 0.84442 0.83145 0.86654 0.91787 0.86663 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.48 71.98 0.68 -1.18 16 2 C 0.14 2.08 2.57 44.99 0.12 2.19 16 3 H 0.07 1.52 7.58 -2.38 -0.02 1.50 16 4 C -0.60 -1.76 5.33 71.98 0.38 -1.38 16 5 S 2.40 24.83 5.28 -56.49 -0.30 24.53 16 6 C -0.63 0.33 10.62 113.37 1.20 1.54 16 7 O -1.00 -23.05 18.10 -127.37 -2.31 -25.35 16 8 O -0.97 -16.95 16.90 -127.37 -2.15 -19.10 16 9 N -0.73 -12.44 4.16 -442.54 -1.84 -14.28 16 10 C 0.51 13.86 7.79 87.66 0.68 14.54 16 11 O -0.58 -22.28 15.70 -3.02 -0.05 -22.32 16 12 C -0.08 -1.92 5.83 29.10 0.17 -1.75 16 13 C -0.15 -5.11 4.38 -19.83 -0.09 -5.20 16 14 C -0.05 -2.03 9.69 22.25 0.22 -1.81 16 15 C -0.20 -9.52 9.99 22.39 0.22 -9.30 16 16 C 0.11 6.14 6.65 22.58 0.15 6.29 16 17 O -0.23 -14.96 9.76 -22.79 -0.22 -15.18 16 18 C -0.41 -25.82 9.49 67.92 0.64 -25.17 16 19 H 0.10 5.65 5.20 -2.91 -0.02 5.64 16 20 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16 21 N -0.92 -58.99 13.67 21.61 0.30 -58.70 16 22 Si 1.02 45.60 29.55 68.60 2.03 47.63 16 23 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 26 C -0.24 -12.00 9.17 22.39 0.21 -11.80 16 27 C -0.06 -2.62 9.69 22.25 0.22 -2.40 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.19 -1.15 8.14 -2.39 -0.02 -1.17 16 32 H 0.18 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.15 -0.78 8.14 -2.39 -0.02 -0.80 16 34 H 0.16 -1.09 8.14 -2.39 -0.02 -1.11 16 35 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.42 4.06 8.20 -92.71 -0.76 3.30 16 37 H 0.12 2.38 8.08 -2.39 -0.02 2.36 16 38 H 0.14 2.09 8.08 -2.39 -0.02 2.07 16 39 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 41 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 42 H 0.12 5.78 5.64 -2.91 -0.02 5.76 16 43 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -103.29 381.02 1.01 -102.28 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.28 Total: 16.88 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 5.27 Total: -36.38 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -1.54 Total: -72.98 kcal Atomic # 8 Polarization: -77.23 SS G_CDS: -4.73 Total: -81.96 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 24.83 SS G_CDS: -0.30 Total: 24.53 kcal Total: -103.29 1.01 -102.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733244990.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.498 kcal (2) G-P(sol) polarization free energy of solvation -103.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds