Wall clock time and date at job start Sat Apr 11 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47268 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00262 * 3 2 1 5 5 C 1.50700 * 109.47101 * 269.99899 * 4 3 2 6 6 H 1.07998 * 119.99673 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99805 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46927 * 89.99737 * 9 7 5 11 11 H 1.48497 * 109.47092 * 209.99709 * 9 7 5 12 12 H 1.48501 * 109.46902 * 330.00210 * 9 7 5 13 13 C 1.34779 * 119.99707 * 89.99931 * 3 2 1 14 14 O 1.21282 * 119.99922 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00037 * 0.02562 * 13 3 2 16 16 O 1.42905 * 109.46972 * 179.97438 * 15 13 3 17 17 C 1.34975 * 116.99542 * 180.02562 * 16 15 13 18 18 O 1.21701 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.41478 * 119.99328 * 180.02562 * 17 16 15 20 20 S 1.75820 * 125.48394 * 0.02562 * 19 17 16 21 21 C 1.70578 * 91.66158 * 179.97438 * 20 19 17 22 22 C 1.50696 * 124.41404 * 180.02562 * 21 20 19 23 23 C 1.33637 * 111.16251 * 0.02562 * 21 20 19 24 24 C 1.37392 * 125.47551 * 179.71869 * 19 17 16 25 25 O 1.35760 * 123.48078 * 0.03147 * 24 19 17 26 26 C 1.42904 * 116.99954 * 180.02562 * 25 24 19 27 27 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47062 * 299.99623 * 1 2 3 29 29 H 1.08998 * 109.47148 * 59.99875 * 1 2 3 30 30 H 1.09004 * 109.46622 * 240.00532 * 2 1 3 31 31 H 1.08998 * 109.47148 * 120.00125 * 2 1 3 32 32 H 1.08998 * 109.47257 * 30.00380 * 4 3 2 33 33 H 1.08999 * 109.46628 * 149.99983 * 4 3 2 34 34 H 0.96998 * 120.00012 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47103 * 59.99751 * 15 13 3 36 36 H 1.09000 * 109.47247 * 299.99628 * 15 13 3 37 37 H 1.08995 * 109.47809 * 0.02815 * 22 21 20 38 38 H 1.09007 * 109.47161 * 120.02844 * 22 21 20 39 39 H 1.09003 * 109.47296 * 240.02477 * 22 21 20 40 40 H 1.07994 * 122.44943 * 179.97438 * 23 21 20 41 41 H 1.08995 * 109.47059 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.46809 * 300.00374 * 26 25 24 43 43 H 1.09008 * 109.46775 * 59.99877 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3905 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9133 2.0964 -3.4171 10 1 5.9759 0.8760 -4.2608 11 1 6.3928 3.2640 -4.1994 12 1 6.7735 1.9154 -2.2202 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4723 16 8 2.3023 2.1812 3.5585 17 6 2.1313 1.6943 4.8057 18 8 1.7292 0.5568 4.9651 19 6 2.4186 2.5069 5.9277 20 16 3.0025 4.1641 5.8649 21 6 3.0397 4.2680 7.5671 22 6 3.4700 5.4901 8.3367 23 6 2.6376 3.1242 8.1292 24 6 2.2805 2.1298 7.2416 25 8 1.8424 0.9039 7.6269 26 6 1.7509 0.6597 9.0319 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1410 -1.1382 34 1 3.6755 3.5178 -4.4430 35 1 2.6228 0.4185 2.5298 36 1 0.9444 1.0114 2.5303 37 1 3.7471 6.2801 7.6388 38 1 2.6474 5.8323 8.9648 39 1 4.3267 5.2420 8.9633 40 1 2.5911 2.9895 9.1997 41 1 1.3885 -0.3541 9.2016 42 1 2.7353 0.7749 9.4855 43 1 1.0586 1.3725 9.4802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733840730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:21 Heat of formation + Delta-G solvation = -119.862163 kcal Electronic energy + Delta-G solvation = -27048.607782 eV Core-core repulsion = 22993.815930 eV Total energy + Delta-G solvation = -4054.791852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.75600 -39.91295 -38.76313 -36.73334 -36.18028 -35.22337 -32.81202 -32.34650 -30.13104 -29.40407 -28.34175 -27.43292 -26.23103 -23.63169 -23.04859 -22.78828 -21.89999 -19.59670 -18.88888 -18.55053 -17.25749 -16.96306 -16.71103 -16.38529 -16.13258 -16.00054 -15.71910 -15.15089 -14.59774 -14.48910 -14.25607 -14.20634 -14.01268 -13.41637 -13.29845 -13.05427 -12.94345 -12.69568 -12.50733 -12.30684 -12.04153 -11.99642 -11.85946 -11.56905 -11.20567 -11.19372 -11.06313 -10.89902 -10.80540 -10.54979 -10.45028 -10.38623 -10.11362 -9.62380 -9.04470 -8.91878 -8.41941 -8.32394 -7.69775 -6.02864 -4.07472 0.14633 1.19073 1.57230 1.94780 2.67981 2.95387 3.11726 3.31679 3.33204 3.38895 3.44619 3.99138 4.17980 4.46646 4.68050 4.73838 4.79757 4.80438 4.94953 5.04586 5.05310 5.15529 5.17381 5.31812 5.32215 5.34189 5.45952 5.48121 5.53071 5.65159 5.79558 5.80730 6.06353 6.24329 6.48331 6.51144 6.90133 7.04960 7.43980 7.52455 7.87950 7.94163 8.24100 8.35643 8.89313 9.04629 9.57463 11.05299 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.002644 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.615543 B =10587.977536 C =11736.325407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.519 6.519 15 C 0.052 3.948 16 O -0.329 6.329 17 C 0.542 3.458 18 O -0.498 6.498 19 C -0.327 4.327 20 S 0.300 5.700 21 C -0.169 4.169 22 C -0.090 4.090 23 C -0.231 4.231 24 C 0.205 3.795 25 O -0.274 6.274 26 C 0.023 3.977 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.150 0.850 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 -1.335 26.565 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.245 6.245 17 C 0.388 3.612 18 O -0.388 6.388 19 C -0.445 4.445 20 S 0.568 5.432 21 C -0.289 4.289 22 C -0.148 4.148 23 C -0.264 4.264 24 C 0.144 3.856 25 O -0.185 6.185 26 C -0.072 4.072 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.168 0.832 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.724 -0.120 25.072 25.347 hybrid contribution 0.536 -1.416 1.045 1.839 sum -3.187 -1.535 26.117 26.355 Atomic orbital electron populations 1.22232 0.96570 1.01659 1.02394 1.21505 0.93743 0.83972 1.03012 1.48197 1.63895 1.13408 1.07123 1.19322 0.96424 0.93718 0.77617 1.21438 0.96889 1.31924 1.06319 0.92389 1.24929 0.97890 0.94883 0.96372 1.69932 1.35699 1.33406 1.14348 0.86489 0.84657 0.77648 0.78596 1.20658 1.21086 1.19852 1.19726 0.79604 0.87114 0.84284 1.90702 1.44515 1.17527 1.86761 1.22536 1.02605 0.92899 0.84540 1.86212 1.79458 1.44760 1.14031 1.18103 0.75464 0.85322 0.82326 1.90914 1.43066 1.18491 1.86372 1.21597 1.27335 1.02391 0.93187 1.83814 1.58354 1.04000 0.97040 1.24331 1.02757 1.00221 1.01629 1.20479 1.02254 0.92497 0.99552 1.19815 1.11702 0.93589 1.01318 1.18167 0.91414 0.85470 0.90593 1.86310 1.79216 1.27525 1.25441 1.23202 1.01660 1.03183 0.79177 0.91934 0.93098 0.91834 0.89478 0.91694 0.94665 0.93702 0.92708 0.88976 0.89046 0.90605 0.89844 0.89832 0.83226 0.87761 0.92417 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 37.16 0.38 -2.00 16 2 C 0.10 1.68 5.93 -4.04 -0.02 1.66 16 3 N -0.59 -12.86 2.46 -175.06 -0.43 -13.29 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 5 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.51 11.24 7.75 -10.99 -0.09 11.16 16 14 O -0.52 -13.73 16.08 -14.35 -0.23 -13.96 16 15 C 0.05 0.93 4.41 36.01 0.16 1.09 16 16 O -0.33 -6.16 9.40 -48.01 -0.45 -6.61 16 17 C 0.54 9.41 7.72 31.97 0.25 9.66 16 18 O -0.50 -9.33 15.62 -25.54 -0.40 -9.73 16 19 C -0.33 -4.77 6.28 -38.66 -0.24 -5.01 16 20 S 0.30 3.50 22.74 -107.50 -2.44 1.06 16 21 C -0.17 -1.46 6.27 -35.92 -0.23 -1.68 16 22 C -0.09 -0.46 10.32 36.00 0.37 -0.09 16 23 C -0.23 -2.09 9.02 -41.29 -0.37 -2.46 16 24 C 0.20 2.54 6.70 -39.98 -0.27 2.28 16 25 O -0.27 -3.41 9.36 -36.53 -0.34 -3.75 16 26 C 0.02 0.16 9.94 101.05 1.00 1.16 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.69 7.22 -51.92 -0.38 0.32 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 31 H 0.06 0.93 6.44 -51.93 -0.33 0.59 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.09 1.51 7.39 -51.93 -0.38 1.13 16 36 H 0.09 1.45 7.17 -51.93 -0.37 1.07 16 37 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.15 0.91 6.99 -52.49 -0.37 0.54 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 43 H 0.06 0.30 7.89 -51.92 -0.41 -0.11 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -36.83 383.85 -8.25 -45.08 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.95 Total: -4.17 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 0.50 Total: 8.53 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.31 Total: -39.25 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.42 Total: -34.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.44 Total: 1.06 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.83 -8.25 -45.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733840730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.783 kcal (2) G-P(sol) polarization free energy of solvation -36.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds