Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47268 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00262 * 3 2 1 5 5 C 1.50700 * 109.47101 * 269.99899 * 4 3 2 6 6 H 1.07998 * 119.99673 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99805 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46927 * 89.99737 * 9 7 5 11 11 H 1.48497 * 109.47092 * 209.99709 * 9 7 5 12 12 H 1.48501 * 109.46902 * 330.00210 * 9 7 5 13 13 C 1.34779 * 119.99707 * 89.99931 * 3 2 1 14 14 O 1.21282 * 119.99922 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00037 * 0.02562 * 13 3 2 16 16 O 1.42905 * 109.46972 * 179.97438 * 15 13 3 17 17 C 1.34975 * 116.99542 * 180.02562 * 16 15 13 18 18 O 1.21701 * 120.00192 * 359.97438 * 17 16 15 19 19 C 1.41478 * 119.99328 * 180.02562 * 17 16 15 20 20 S 1.75820 * 125.48394 * 0.02562 * 19 17 16 21 21 C 1.70578 * 91.66158 * 179.97438 * 20 19 17 22 22 C 1.50696 * 124.41404 * 180.02562 * 21 20 19 23 23 C 1.33637 * 111.16251 * 0.02562 * 21 20 19 24 24 C 1.37392 * 125.47551 * 179.71869 * 19 17 16 25 25 O 1.35760 * 123.48078 * 0.03147 * 24 19 17 26 26 C 1.42904 * 116.99954 * 180.02562 * 25 24 19 27 27 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47062 * 299.99623 * 1 2 3 29 29 H 1.08998 * 109.47148 * 59.99875 * 1 2 3 30 30 H 1.09004 * 109.46622 * 240.00532 * 2 1 3 31 31 H 1.08998 * 109.47148 * 120.00125 * 2 1 3 32 32 H 1.08998 * 109.47257 * 30.00380 * 4 3 2 33 33 H 1.08999 * 109.46628 * 149.99983 * 4 3 2 34 34 H 0.96998 * 120.00012 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47103 * 59.99751 * 15 13 3 36 36 H 1.09000 * 109.47247 * 299.99628 * 15 13 3 37 37 H 1.08995 * 109.47809 * 0.02815 * 22 21 20 38 38 H 1.09007 * 109.47161 * 120.02844 * 22 21 20 39 39 H 1.09003 * 109.47296 * 240.02477 * 22 21 20 40 40 H 1.07994 * 122.44943 * 179.97438 * 23 21 20 41 41 H 1.08995 * 109.47059 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.46809 * 300.00374 * 26 25 24 43 43 H 1.09008 * 109.46775 * 59.99877 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1493 2.3905 -2.8774 8 7 3.3493 3.1267 -3.6175 9 14 5.9133 2.0964 -3.4171 10 1 5.9759 0.8760 -4.2608 11 1 6.3928 3.2640 -4.1994 12 1 6.7735 1.9154 -2.2202 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3059 2.4723 16 8 2.3023 2.1812 3.5585 17 6 2.1313 1.6943 4.8057 18 8 1.7292 0.5568 4.9651 19 6 2.4186 2.5069 5.9277 20 16 3.0025 4.1641 5.8649 21 6 3.0397 4.2680 7.5671 22 6 3.4700 5.4901 8.3367 23 6 2.6376 3.1242 8.1292 24 6 2.2805 2.1298 7.2416 25 8 1.8424 0.9039 7.6269 26 6 1.7509 0.6597 9.0319 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.5816 1.6878 -2.0283 33 1 2.0955 3.1410 -1.1382 34 1 3.6755 3.5178 -4.4430 35 1 2.6228 0.4185 2.5298 36 1 0.9444 1.0114 2.5303 37 1 3.7471 6.2801 7.6388 38 1 2.6474 5.8323 8.9648 39 1 4.3267 5.2420 8.9633 40 1 2.5911 2.9895 9.1997 41 1 1.3885 -0.3541 9.2016 42 1 2.7353 0.7749 9.4855 43 1 1.0586 1.3725 9.4802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733840730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = -142.626238 kcal Electronic energy + Delta-G solvation = -27049.594907 eV Core-core repulsion = 22993.815930 eV Total energy + Delta-G solvation = -4055.778977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.96346 -41.03993 -40.35179 -37.68615 -37.38954 -36.96753 -34.94166 -33.13911 -31.75862 -30.80437 -29.21939 -28.57090 -27.68759 -24.97203 -24.37953 -24.12478 -23.15468 -20.64841 -20.15639 -19.87394 -18.67128 -18.43305 -18.05608 -17.95608 -17.45604 -17.25315 -16.89046 -16.60307 -16.16763 -15.89259 -15.30151 -14.92968 -14.86007 -14.74210 -14.61519 -14.50925 -13.97345 -13.90242 -13.63370 -13.58056 -13.29362 -13.14053 -13.12219 -13.06776 -12.68618 -12.51493 -12.49656 -12.23040 -12.05607 -11.86338 -11.85924 -11.78001 -11.71399 -11.69831 -10.73975 -10.64254 -9.88990 -9.55684 -9.19571 -8.23262 -6.37779 -0.74314 0.32517 0.77473 1.07390 1.31194 1.37087 1.39948 1.50419 1.59531 1.83121 2.34098 2.37020 2.48136 3.06639 3.41462 3.50974 3.80273 3.94705 3.97027 4.07156 4.13800 4.20404 4.32968 4.36646 4.38533 4.56469 4.57295 4.72713 4.74729 4.84457 4.88642 4.92852 4.98905 5.01851 5.16996 5.20272 5.23996 5.34353 5.53859 5.79300 6.04054 6.14927 6.52681 6.65229 6.70854 7.19693 7.35866 8.84336 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.002644 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.615543 B =10587.977536 C =11736.325407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.274 1.274 13 C 0.502 3.498 14 O -0.575 6.575 15 C 0.064 3.936 16 O -0.348 6.348 17 C 0.541 3.459 18 O -0.524 6.524 19 C -0.381 4.381 20 S 0.259 5.741 21 C -0.133 4.133 22 C -0.093 4.093 23 C -0.234 4.234 24 C 0.219 3.781 25 O -0.303 6.303 26 C 0.012 3.988 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.031 0.969 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.189 0.811 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -2.250 29.551 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.199 1.199 13 C 0.289 3.711 14 O -0.454 6.454 15 C -0.013 4.013 16 O -0.264 6.264 17 C 0.390 3.610 18 O -0.417 6.417 19 C -0.498 4.498 20 S 0.526 5.474 21 C -0.254 4.254 22 C -0.151 4.151 23 C -0.265 4.265 24 C 0.156 3.844 25 O -0.215 6.215 26 C -0.082 4.082 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.049 0.951 33 H 0.019 0.981 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.206 0.794 41 H 0.135 0.865 42 H 0.095 0.905 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.168 -1.097 28.079 28.279 hybrid contribution 0.311 -1.115 0.294 1.195 sum -2.857 -2.212 28.374 28.603 Atomic orbital electron populations 1.22171 0.94300 1.03796 1.01798 1.21861 0.95602 0.81026 1.04321 1.48200 1.63592 1.15236 1.05650 1.18809 0.95660 0.91688 0.79623 1.21690 0.97785 1.32228 1.06695 0.92886 1.25845 1.02451 0.94367 0.96336 1.70047 1.37778 1.34035 1.14801 0.85402 0.78892 0.78260 0.78177 1.18740 1.20481 1.19902 1.20455 0.78365 0.86628 0.85681 1.90664 1.47037 1.20029 1.87703 1.22392 1.04336 0.92312 0.82290 1.86218 1.79974 1.45409 1.14842 1.18498 0.74853 0.85482 0.82130 1.90869 1.44913 1.19447 1.86447 1.21637 1.31212 1.03708 0.93219 1.83913 1.59814 1.03210 1.00495 1.24785 0.99761 1.01281 0.99549 1.20718 1.03819 0.90827 0.99705 1.20105 1.11299 0.92497 1.02636 1.18529 0.89453 0.86013 0.90385 1.86271 1.78680 1.27681 1.28883 1.23585 1.03503 1.04600 0.76549 0.88348 0.92691 0.93461 0.89771 0.88754 0.95125 0.98148 0.92311 0.87162 0.86660 0.90215 0.87525 0.87603 0.79409 0.86542 0.90457 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 10.24 71.98 0.74 -3.62 16 2 C 0.09 3.05 5.93 86.38 0.51 3.56 16 3 N -0.59 -26.61 2.46 -826.15 -2.03 -28.64 16 4 C 0.26 14.55 5.16 85.63 0.44 14.99 16 5 C -0.55 -32.14 9.39 25.60 0.24 -31.90 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 9 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 13 C 0.50 23.09 7.75 87.66 0.68 23.77 16 14 O -0.57 -32.27 16.08 16.00 0.26 -32.02 16 15 C 0.06 2.32 4.41 71.24 0.31 2.64 16 16 O -0.35 -13.57 9.40 -52.46 -0.49 -14.06 16 17 C 0.54 19.41 7.72 68.62 0.53 19.94 16 18 O -0.52 -19.95 15.62 25.03 0.39 -19.56 16 19 C -0.38 -11.31 6.28 22.87 0.14 -11.17 16 20 S 0.26 6.14 22.74 -56.49 -1.28 4.85 16 21 C -0.13 -1.98 6.27 24.64 0.15 -1.82 16 22 C -0.09 -0.61 10.32 71.23 0.74 0.13 16 23 C -0.23 -3.54 9.02 21.17 0.19 -3.35 16 24 C 0.22 5.19 6.70 22.01 0.15 5.34 16 25 O -0.30 -7.19 9.36 -74.09 -0.69 -7.88 16 26 C 0.01 0.12 9.94 113.37 1.13 1.25 16 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.43 7.22 -2.38 -0.02 1.41 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 2.79 8.07 -2.38 -0.02 2.77 16 31 H 0.09 2.52 6.44 -2.39 -0.02 2.51 16 32 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 33 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.11 3.57 7.39 -2.38 -0.02 3.56 16 36 H 0.12 3.60 7.17 -2.39 -0.02 3.58 16 37 H 0.08 0.53 8.11 -2.39 -0.02 0.51 16 38 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.19 1.34 6.99 -2.91 -0.02 1.32 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.53 7.87 -2.39 -0.02 0.52 16 43 H 0.08 0.53 7.89 -2.38 -0.02 0.51 16 Total: -1.00 -85.43 383.85 5.90 -79.53 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.03 Total: 5.73 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.42 Total: 20.77 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -1.74 Total: -85.03 kcal Atomic # 8 Polarization: -72.98 SS G_CDS: -0.54 Total: -73.52 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.28 Total: 4.85 kcal Total: -85.43 5.90 -79.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733840730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.101 kcal (2) G-P(sol) polarization free energy of solvation -85.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds