Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21288 * 120.00139 * 2 1 4 4 N 1.34776 * 119.99956 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99676 * 4.92731 * 4 2 1 6 6 C 1.40106 * 120.00289 * 184.92866 * 4 2 1 7 7 C 1.38849 * 120.01834 * 172.68046 * 6 4 2 8 8 C 1.38085 * 119.98596 * 179.97438 * 7 6 4 9 9 C 1.38723 * 120.01565 * 0.02694 * 8 7 6 10 10 O 1.35965 * 119.98856 * 179.97438 * 9 8 7 11 11 S 1.52202 * 113.99811 * 89.99508 * 10 9 8 12 12 O 1.42101 * 104.27738 * 191.07504 * 11 10 9 13 13 O 1.42092 * 104.27994 * 318.93157 * 11 10 9 14 14 C 1.81400 * 104.44786 * 75.00560 * 11 10 9 15 15 C 1.53003 * 109.46808 * 179.97438 * 14 11 10 16 16 C 1.53005 * 109.46859 * 179.97438 * 15 14 11 17 17 C 1.50700 * 109.47129 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99634 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47307 * 59.99519 * 21 19 17 23 23 H 1.48491 * 109.47019 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46809 * 299.99754 * 21 19 17 25 25 C 1.38725 * 120.02776 * 0.22546 * 9 8 7 26 26 C 1.38091 * 120.01713 * 359.49592 * 25 9 8 27 27 H 1.09006 * 109.47458 * 264.71954 * 1 2 3 28 28 H 1.09003 * 109.47183 * 24.71833 * 1 2 3 29 29 H 1.09000 * 109.47092 * 144.71734 * 1 2 3 30 30 H 1.08999 * 109.46971 * 275.02635 * 5 4 2 31 31 H 1.08993 * 109.47054 * 35.03314 * 5 4 2 32 32 H 1.09003 * 109.46763 * 155.03200 * 5 4 2 33 33 H 1.07997 * 120.00071 * 359.95609 * 7 6 4 34 34 H 1.07995 * 119.99001 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.47013 * 299.99506 * 14 11 10 36 36 H 1.09001 * 109.47317 * 60.00128 * 14 11 10 37 37 H 1.08994 * 109.47192 * 299.99717 * 15 14 11 38 38 H 1.09001 * 109.46816 * 60.00141 * 15 14 11 39 39 H 1.09007 * 109.46982 * 300.00192 * 16 15 14 40 40 H 1.09005 * 109.46921 * 60.00055 * 16 15 14 41 41 H 0.96996 * 119.99563 * 179.97438 * 20 19 17 42 42 H 1.08004 * 119.99155 * 179.72368 * 25 9 8 43 43 H 1.07991 * 120.00769 * 180.25354 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4523 -2.4335 -0.1101 6 6 3.5781 -1.1696 0.1037 7 6 4.2612 -2.3687 0.2562 8 6 5.6383 -2.3703 0.3584 9 6 6.3392 -1.1742 0.3092 10 8 7.6950 -1.1764 0.4104 11 16 8.4152 -1.2946 -0.9253 12 8 9.7695 -1.5410 -0.5726 13 8 7.6594 -2.2573 -1.6470 14 6 8.2424 0.3461 -1.6794 15 6 8.9346 0.3557 -3.0439 16 6 8.7882 1.7394 -3.6803 17 6 9.4695 1.7487 -5.0245 18 1 9.9577 0.8567 -5.3886 19 6 9.4696 2.8958 -5.7894 20 7 8.8748 3.9818 -5.3461 21 14 10.3135 2.9071 -7.4559 22 1 9.6852 1.8892 -8.3358 23 1 10.1715 4.2500 -8.0734 24 1 11.7542 2.5908 -7.2833 25 6 5.6569 0.0247 0.1621 26 6 4.2802 0.0273 0.0541 27 1 -0.3634 -0.0946 1.0233 28 1 -0.3634 0.9335 -0.4297 29 1 -0.3633 -0.8389 -0.5936 30 1 1.1177 -2.7468 0.8788 31 1 0.5882 -2.3004 -0.7609 32 1 2.1093 -3.1955 -0.5296 33 1 3.7155 -3.2999 0.2953 34 1 6.1696 -3.3029 0.4774 35 1 7.1850 0.5780 -1.8065 36 1 8.7032 1.0934 -1.0334 37 1 9.9920 0.1240 -2.9165 38 1 8.4741 -0.3916 -3.6901 39 1 7.7306 1.9707 -3.8077 40 1 9.2484 2.4870 -3.0341 41 1 8.8752 4.7889 -5.8840 42 1 6.2028 0.9560 0.1284 43 1 3.7495 0.9603 -0.0646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742331161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = -99.303224 kcal Electronic energy + Delta-G solvation = -27423.347890 eV Core-core repulsion = 23369.447541 eV Total energy + Delta-G solvation = -4053.900350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48894 -40.57738 -38.01929 -36.97217 -35.99797 -35.85188 -34.67616 -32.21199 -31.53777 -31.22840 -28.93668 -27.85390 -27.46588 -23.92286 -23.84752 -22.81837 -21.09146 -20.38039 -20.09359 -18.38741 -18.01573 -17.60597 -17.41710 -16.83759 -16.48778 -16.09612 -15.49504 -15.21143 -14.91166 -14.49045 -14.46619 -14.18226 -14.08347 -13.77096 -13.45889 -13.25186 -13.12031 -12.93684 -12.72161 -12.58207 -12.48859 -12.30056 -12.26593 -12.01054 -11.87022 -11.78811 -11.45855 -11.21704 -10.88116 -10.86260 -10.56716 -10.37906 -9.92520 -9.75245 -9.37730 -9.30356 -9.12695 -8.37870 -8.28287 -6.02857 -4.06053 0.16710 0.90984 1.08609 2.06511 2.21779 2.33892 3.33922 3.37556 3.37672 3.40833 3.82375 3.91320 4.17464 4.35397 4.44041 4.44655 4.63362 4.65143 4.71380 4.76687 4.89572 4.91366 5.05969 5.10212 5.15263 5.16107 5.31478 5.32573 5.34075 5.72860 5.79482 5.88938 5.97290 6.05093 6.19505 6.29706 6.45532 6.70074 6.79551 6.89152 7.56152 7.59783 7.70001 7.94961 8.35292 8.99853 9.58349 11.08360 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.003014 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.420841 B = 9286.997785 C =11178.385562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.512 6.512 4 N -0.556 5.556 5 C 0.063 3.937 6 C 0.162 3.838 7 C -0.146 4.146 8 C -0.066 4.066 9 C 0.045 3.955 10 O -0.668 6.668 11 S 2.583 3.417 12 O -0.935 6.935 13 O -0.958 6.958 14 C -0.633 4.633 15 C -0.102 4.102 16 C 0.030 3.970 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.102 4.102 26 C -0.150 4.150 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.262 0.738 42 H 0.147 0.853 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.149 -13.414 15.224 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.302 3.698 3 O -0.388 6.388 4 N -0.279 5.279 5 C -0.079 4.079 6 C 0.066 3.934 7 C -0.167 4.167 8 C -0.086 4.086 9 C 0.002 3.998 10 O -0.627 6.627 11 S 2.682 3.318 12 O -0.934 6.934 13 O -0.956 6.956 14 C -0.762 4.762 15 C -0.141 4.141 16 C -0.008 4.008 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.122 4.122 26 C -0.169 4.169 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.165 0.835 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -19.665 -13.359 15.479 28.369 hybrid contribution 0.564 0.538 -1.082 1.334 sum -19.101 -12.821 14.396 27.138 Atomic orbital electron populations 1.22014 0.90182 1.05873 1.05158 1.21138 0.91190 0.82339 0.75089 1.90406 1.68773 1.31670 1.47963 1.45576 1.04716 1.08315 1.69316 1.22155 0.97765 0.84888 1.03070 1.18158 0.82159 0.94763 0.98289 1.20683 0.93470 0.96896 1.05611 1.21006 0.93697 0.97314 0.96628 1.18100 0.76954 0.95036 1.09671 1.85744 1.25474 1.92517 1.58959 1.05825 0.74489 0.78162 0.73352 1.93603 1.34290 1.84760 1.80698 1.93596 1.70678 1.58302 1.73029 1.30814 1.11248 1.22358 1.11774 1.21479 0.98818 1.04233 0.89615 1.19068 0.97688 0.88865 0.95155 1.21211 1.35270 0.97459 1.02577 0.92415 1.25020 0.95468 0.95557 0.98319 1.69952 1.43579 1.01775 1.38071 0.86610 0.80132 0.77094 0.83915 1.20142 1.21254 1.20115 1.21518 0.95104 0.97057 0.98552 1.22670 0.93000 1.00761 1.00449 0.88268 0.88194 0.89340 0.91069 0.89631 0.89379 0.84217 0.83990 0.85171 0.84792 0.91438 0.91466 0.96064 0.96045 0.92843 0.83549 0.78876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 9.68 36.01 0.35 -0.30 16 2 C 0.51 4.35 7.72 -10.99 -0.08 4.27 16 3 O -0.51 -6.42 13.50 5.55 0.07 -6.35 16 4 N -0.56 -4.36 3.10 -120.78 -0.37 -4.73 16 5 C 0.06 0.20 9.54 59.85 0.57 0.77 16 6 C 0.16 1.73 6.49 -83.62 -0.54 1.19 16 7 C -0.15 -1.41 9.15 -39.41 -0.36 -1.77 16 8 C -0.07 -0.79 9.04 -39.46 -0.36 -1.15 16 9 C 0.04 0.62 4.79 -39.22 -0.19 0.43 16 10 O -0.67 -10.03 10.05 -51.96 -0.52 -10.55 16 11 S 2.58 43.10 5.17 -107.50 -0.56 42.55 16 12 O -0.94 -18.27 18.09 -67.04 -1.21 -19.49 16 13 O -0.96 -17.23 16.26 -67.04 -1.09 -18.32 16 14 C -0.63 -10.63 5.47 37.16 0.20 -10.43 16 15 C -0.10 -2.15 5.16 -26.73 -0.14 -2.29 16 16 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 17 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 21 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C -0.10 -1.32 8.45 -39.46 -0.33 -1.66 16 26 C -0.15 -1.89 9.04 -39.41 -0.36 -2.25 16 27 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.12 6.09 -51.93 -0.32 -0.20 16 30 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 31 H 0.09 0.09 6.18 -51.93 -0.32 -0.23 16 32 H 0.09 0.25 6.25 -51.93 -0.32 -0.07 16 33 H 0.14 0.84 6.25 -52.49 -0.33 0.51 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.99 6.62 -51.93 -0.34 1.65 16 36 H 0.13 2.01 8.14 -51.92 -0.42 1.58 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.15 1.67 7.52 -52.48 -0.39 1.28 16 43 H 0.20 2.60 4.54 -56.19 -0.25 2.35 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -38.29 367.11 -9.85 -48.14 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.63 Total: -1.04 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -1.79 Total: -26.35 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.36 Total: -30.97 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -2.75 Total: -54.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 43.10 SS G_CDS: -0.56 Total: 42.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.29 -9.85 -48.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742331161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.166 kcal (2) G-P(sol) polarization free energy of solvation -38.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds