Wall clock time and date at job start Sat Apr 11 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21288 * 120.00139 * 2 1 4 4 N 1.34776 * 119.99956 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99676 * 4.92731 * 4 2 1 6 6 C 1.40106 * 120.00289 * 184.92866 * 4 2 1 7 7 C 1.38849 * 120.01834 * 172.68046 * 6 4 2 8 8 C 1.38085 * 119.98596 * 179.97438 * 7 6 4 9 9 C 1.38723 * 120.01565 * 0.02694 * 8 7 6 10 10 O 1.35965 * 119.98856 * 179.97438 * 9 8 7 11 11 S 1.52202 * 113.99811 * 89.99508 * 10 9 8 12 12 O 1.42101 * 104.27738 * 191.07504 * 11 10 9 13 13 O 1.42092 * 104.27994 * 318.93157 * 11 10 9 14 14 C 1.81400 * 104.44786 * 75.00560 * 11 10 9 15 15 C 1.53003 * 109.46808 * 179.97438 * 14 11 10 16 16 C 1.53005 * 109.46859 * 179.97438 * 15 14 11 17 17 C 1.50700 * 109.47129 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99634 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47307 * 59.99519 * 21 19 17 23 23 H 1.48491 * 109.47019 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46809 * 299.99754 * 21 19 17 25 25 C 1.38725 * 120.02776 * 0.22546 * 9 8 7 26 26 C 1.38091 * 120.01713 * 359.49592 * 25 9 8 27 27 H 1.09006 * 109.47458 * 264.71954 * 1 2 3 28 28 H 1.09003 * 109.47183 * 24.71833 * 1 2 3 29 29 H 1.09000 * 109.47092 * 144.71734 * 1 2 3 30 30 H 1.08999 * 109.46971 * 275.02635 * 5 4 2 31 31 H 1.08993 * 109.47054 * 35.03314 * 5 4 2 32 32 H 1.09003 * 109.46763 * 155.03200 * 5 4 2 33 33 H 1.07997 * 120.00071 * 359.95609 * 7 6 4 34 34 H 1.07995 * 119.99001 * 179.97438 * 8 7 6 35 35 H 1.08994 * 109.47013 * 299.99506 * 14 11 10 36 36 H 1.09001 * 109.47317 * 60.00128 * 14 11 10 37 37 H 1.08994 * 109.47192 * 299.99717 * 15 14 11 38 38 H 1.09001 * 109.46816 * 60.00141 * 15 14 11 39 39 H 1.09007 * 109.46982 * 300.00192 * 16 15 14 40 40 H 1.09005 * 109.46921 * 60.00055 * 16 15 14 41 41 H 0.96996 * 119.99563 * 179.97438 * 20 19 17 42 42 H 1.08004 * 119.99155 * 179.72368 * 25 9 8 43 43 H 1.07991 * 120.00769 * 180.25354 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4523 -2.4335 -0.1101 6 6 3.5781 -1.1696 0.1037 7 6 4.2612 -2.3687 0.2562 8 6 5.6383 -2.3703 0.3584 9 6 6.3392 -1.1742 0.3092 10 8 7.6950 -1.1764 0.4104 11 16 8.4152 -1.2946 -0.9253 12 8 9.7695 -1.5410 -0.5726 13 8 7.6594 -2.2573 -1.6470 14 6 8.2424 0.3461 -1.6794 15 6 8.9346 0.3557 -3.0439 16 6 8.7882 1.7394 -3.6803 17 6 9.4695 1.7487 -5.0245 18 1 9.9577 0.8567 -5.3886 19 6 9.4696 2.8958 -5.7894 20 7 8.8748 3.9818 -5.3461 21 14 10.3135 2.9071 -7.4559 22 1 9.6852 1.8892 -8.3358 23 1 10.1715 4.2500 -8.0734 24 1 11.7542 2.5908 -7.2833 25 6 5.6569 0.0247 0.1621 26 6 4.2802 0.0273 0.0541 27 1 -0.3634 -0.0946 1.0233 28 1 -0.3634 0.9335 -0.4297 29 1 -0.3633 -0.8389 -0.5936 30 1 1.1177 -2.7468 0.8788 31 1 0.5882 -2.3004 -0.7609 32 1 2.1093 -3.1955 -0.5296 33 1 3.7155 -3.2999 0.2953 34 1 6.1696 -3.3029 0.4774 35 1 7.1850 0.5780 -1.8065 36 1 8.7032 1.0934 -1.0334 37 1 9.9920 0.1240 -2.9165 38 1 8.4741 -0.3916 -3.6901 39 1 7.7306 1.9707 -3.8077 40 1 9.2484 2.4870 -3.0341 41 1 8.8752 4.7889 -5.8840 42 1 6.2028 0.9560 0.1284 43 1 3.7495 0.9603 -0.0646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742331161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:27 Heat of formation + Delta-G solvation = -126.030446 kcal Electronic energy + Delta-G solvation = -27424.506870 eV Core-core repulsion = 23369.447541 eV Total energy + Delta-G solvation = -4055.059329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.36391 -41.48466 -38.90430 -38.37813 -37.30940 -36.69642 -36.50049 -34.23445 -32.34997 -31.93490 -29.77741 -29.49473 -27.94981 -25.78842 -24.77611 -23.81877 -22.53030 -21.70249 -20.90312 -19.61178 -18.87271 -18.76249 -18.61433 -18.23196 -17.59351 -17.04028 -16.79769 -16.56244 -16.20147 -15.83796 -15.71321 -15.05889 -14.72834 -14.56587 -14.53227 -14.30910 -14.11891 -14.09672 -13.84148 -13.63021 -13.61549 -13.39251 -13.36986 -13.29504 -13.07915 -13.05059 -12.75241 -12.71380 -12.69675 -12.31966 -12.20039 -11.79781 -11.43171 -11.29948 -11.04950 -10.58704 -10.49805 -10.20672 -9.09645 -8.23644 -6.35443 -1.08898 -0.06751 0.16899 1.05676 1.39135 1.42374 1.43508 1.50313 1.70417 2.38284 2.48473 2.49031 2.89573 3.09687 3.41323 3.54174 3.67836 3.72126 3.82932 3.90929 4.06911 4.15575 4.18820 4.31368 4.42139 4.50013 4.55339 4.59109 4.73330 4.83318 4.85698 4.86970 5.00576 5.01136 5.09245 5.14042 5.19114 5.28728 5.42357 5.58846 5.76870 5.86754 6.16940 6.17859 6.79802 6.92956 7.33922 8.87908 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.003014 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.420841 B = 9286.997785 C =11178.385562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.499 3.501 3 O -0.562 6.562 4 N -0.555 5.555 5 C 0.050 3.950 6 C 0.164 3.836 7 C -0.135 4.135 8 C -0.073 4.073 9 C 0.007 3.993 10 O -0.660 6.660 11 S 2.611 3.389 12 O -0.966 6.966 13 O -0.970 6.970 14 C -0.634 4.634 15 C -0.101 4.101 16 C 0.031 3.969 17 C -0.553 4.553 18 H 0.063 0.937 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.966 3.034 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.267 1.267 25 C -0.110 4.110 26 C -0.173 4.173 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.183 0.817 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.265 0.735 42 H 0.150 0.850 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.122 -15.629 15.096 31.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.442 6.442 4 N -0.277 5.277 5 C -0.090 4.090 6 C 0.067 3.933 7 C -0.155 4.155 8 C -0.094 4.094 9 C -0.035 4.035 10 O -0.620 6.620 11 S 2.710 3.290 12 O -0.964 6.964 13 O -0.969 6.969 14 C -0.762 4.762 15 C -0.140 4.140 16 C -0.007 4.007 17 C -0.591 4.591 18 H 0.081 0.919 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.191 1.191 25 C -0.131 4.131 26 C -0.193 4.193 27 H 0.139 0.861 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.200 0.800 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.168 0.832 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -21.656 -15.611 15.344 30.792 hybrid contribution 0.973 1.213 -0.958 1.826 sum -20.683 -14.398 14.386 29.018 Atomic orbital electron populations 1.22070 0.86140 1.06982 1.07033 1.22148 0.93114 0.81726 0.73735 1.90388 1.70066 1.33566 1.50177 1.45897 1.03596 1.10026 1.68135 1.22589 0.98318 0.82763 1.05314 1.18395 0.83990 0.94393 0.96533 1.21082 0.92643 0.98127 1.03666 1.21367 0.94883 0.97123 0.96050 1.18445 0.76229 0.96218 1.12602 1.85715 1.26517 1.92437 1.57303 1.04969 0.73610 0.77272 0.73143 1.93558 1.36344 1.85082 1.81411 1.93557 1.70812 1.58697 1.73788 1.30771 1.11748 1.23859 1.09858 1.21298 0.99769 1.01264 0.91685 1.18961 0.95886 0.91291 0.94579 1.21700 1.35640 0.97913 1.03891 0.91900 1.25979 0.96068 0.95082 1.02542 1.70081 1.44782 1.02452 1.39752 0.85490 0.79225 0.77481 0.78827 1.19059 1.20629 1.19149 1.21619 0.95520 0.97231 0.98705 1.22727 0.93023 1.01632 1.01870 0.86141 0.88695 0.86242 0.88642 0.87099 0.88691 0.79964 0.82630 0.83984 0.83255 0.91085 0.91000 0.98034 0.97972 0.92615 0.83239 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 9.68 71.24 0.69 -0.07 16 2 C 0.50 7.90 7.72 87.66 0.68 8.57 16 3 O -0.56 -14.56 13.50 -3.06 -0.04 -14.60 16 4 N -0.55 -7.44 3.10 -654.43 -2.03 -9.47 16 5 C 0.05 0.11 9.54 127.77 1.22 1.33 16 6 C 0.16 3.31 6.49 38.11 0.25 3.56 16 7 C -0.14 -2.28 9.15 22.38 0.20 -2.08 16 8 C -0.07 -1.67 9.04 22.35 0.20 -1.46 16 9 C 0.01 0.20 4.79 22.50 0.11 0.31 16 10 O -0.66 -19.85 10.05 -62.25 -0.63 -20.48 16 11 S 2.61 87.23 5.17 -56.49 -0.29 86.94 16 12 O -0.97 -37.87 18.09 -118.57 -2.15 -40.01 16 13 O -0.97 -34.48 16.26 -118.57 -1.93 -36.41 16 14 C -0.63 -21.69 5.47 71.98 0.39 -21.29 16 15 C -0.10 -4.34 5.16 30.60 0.16 -4.18 16 16 C 0.03 1.66 4.97 29.85 0.15 1.81 16 17 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 18 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 19 C 0.00 0.09 5.46 84.65 0.46 0.55 16 20 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 21 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 C -0.11 -2.95 8.45 22.35 0.19 -2.76 16 26 C -0.17 -4.50 9.04 22.38 0.20 -4.30 16 27 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.12 -0.20 6.09 -2.39 -0.01 -0.21 16 30 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.11 -0.30 6.18 -2.39 -0.01 -0.31 16 32 H 0.09 0.11 6.25 -2.39 -0.01 0.10 16 33 H 0.18 1.39 6.25 -2.91 -0.02 1.37 16 34 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.14 4.49 6.62 -2.39 -0.02 4.47 16 36 H 0.15 4.58 8.14 -2.39 -0.02 4.56 16 37 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 40 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.15 3.66 7.52 -2.91 -0.02 3.64 16 43 H 0.18 5.26 4.54 -61.41 -0.28 4.98 16 Total: -1.00 -85.51 367.11 1.15 -84.36 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.77 Total: 11.63 kcal Atomic # 6 Polarization: -57.14 SS G_CDS: 5.13 Total: -52.01 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -1.75 Total: -66.37 kcal Atomic # 8 Polarization: -106.76 SS G_CDS: -4.74 Total: -111.50 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 87.23 SS G_CDS: -0.29 Total: 86.94 kcal Total: -85.51 1.15 -84.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742331161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.671 kcal (2) G-P(sol) polarization free energy of solvation -85.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds