Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36003 * 116.99977 * 2 1 4 4 C 1.38620 * 120.15859 * 0.02562 * 3 2 1 5 5 C 1.38501 * 120.55296 * 180.26563 * 4 3 2 6 6 C 1.38031 * 120.39888 * 359.51188 * 5 4 3 7 7 C 1.39202 * 119.57614 * 0.46384 * 6 5 4 8 8 C 1.38789 * 120.15541 * 180.02562 * 3 2 1 9 9 O 1.35628 * 121.64836 * 0.02562 * 8 3 2 10 10 C 1.42765 * 117.24569 * 146.97334 * 9 8 3 11 11 H 1.09003 * 109.18844 * 288.45499 * 10 9 8 12 12 C 1.50702 * 109.18839 * 169.19444 * 10 9 8 13 13 C 1.38309 * 119.92857 * 268.30768 * 12 10 9 14 14 C 1.38094 * 120.06419 * 179.72733 * 13 12 10 15 15 C 1.38875 * 119.93518 * 0.56782 * 14 13 12 16 16 O 1.35746 * 120.07206 * 179.68389 * 15 14 13 17 17 C 1.34830 * 117.00080 * 174.48889 * 16 15 14 18 18 H 1.08000 * 119.99984 * 5.05351 * 17 16 15 19 19 C 1.38657 * 119.99924 * 185.06136 * 17 16 15 20 20 N 1.31557 * 120.00237 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99797 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46968 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46763 * 119.99750 * 21 19 17 24 24 H 1.48499 * 109.46951 * 239.99722 * 21 19 17 25 25 C 1.38888 * 119.85965 * 359.70315 * 15 14 13 26 26 C 1.38099 * 119.92758 * 0.02562 * 25 15 14 27 27 N 1.46324 * 110.91225 * 48.82293 * 10 9 8 28 28 C 1.35351 * 120.12103 * 326.57676 * 27 10 9 29 29 O 1.21586 * 121.13794 * 183.21069 * 28 27 10 30 30 H 1.09002 * 109.46719 * 299.99873 * 1 2 3 31 31 H 1.08994 * 109.47304 * 59.99563 * 1 2 3 32 32 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.72559 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.80018 * 179.74375 * 5 4 3 35 35 H 1.07999 * 120.20990 * 180.23710 * 6 5 4 36 36 H 1.07999 * 119.96183 * 359.97438 * 13 12 10 37 37 H 1.08003 * 120.03047 * 180.27009 * 14 13 12 38 38 H 0.96991 * 119.99943 * 180.02562 * 20 19 17 39 39 H 1.07995 * 120.03059 * 180.02562 * 25 15 14 40 40 H 1.07996 * 119.95877 * 179.97438 * 26 25 15 41 41 H 0.97003 * 119.94089 * 146.54735 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2946 2.3764 0.0005 5 6 1.9149 3.6148 -0.0050 6 6 3.2921 3.7062 -0.0010 7 6 4.0578 2.5436 -0.0011 8 6 3.4322 1.2882 -0.0005 9 8 4.2063 0.1745 -0.0016 10 6 5.4529 0.2457 -0.6938 11 1 5.2656 0.2697 -1.7674 12 6 6.2738 -0.9738 -0.3624 13 6 7.1596 -0.9417 0.6993 14 6 7.9092 -2.0594 1.0089 15 6 7.7815 -3.2127 0.2458 16 8 8.5217 -4.3109 0.5438 17 6 8.2673 -5.4307 -0.1628 18 1 7.5618 -5.4049 -0.9802 19 6 8.9114 -6.6154 0.1599 20 7 9.7710 -6.6468 1.1553 21 14 8.5584 -8.1670 -0.8187 22 1 7.5608 -7.8683 -1.8772 23 1 9.8141 -8.6540 -1.4444 24 1 8.0194 -9.2122 0.0881 25 6 6.8952 -3.2399 -0.8232 26 6 6.1443 -2.1207 -1.1243 27 7 6.1965 1.4455 -0.3084 28 6 5.5346 2.5853 -0.0007 29 8 6.1349 3.6085 0.2657 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2162 2.3177 0.0005 34 1 1.3173 4.5144 -0.0087 35 1 3.7726 4.6734 -0.0014 36 1 7.2622 -0.0429 1.2891 37 1 8.5975 -2.0352 1.8408 38 1 10.2218 -7.4754 1.3808 39 1 6.7934 -4.1354 -1.4182 40 1 5.4553 -2.1412 -1.9557 41 1 7.1657 1.4238 -0.2730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746988105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = -66.093968 kcal Electronic energy + Delta-G solvation = -28429.824837 eV Core-core repulsion = 24241.920597 eV Total energy + Delta-G solvation = -4187.904240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45961 -39.73023 -39.11206 -38.23244 -37.29603 -36.49599 -34.18273 -32.46577 -31.25482 -30.56340 -30.30385 -29.30200 -27.53471 -25.95338 -24.77825 -24.33888 -22.49407 -22.20402 -20.95408 -20.11121 -19.18417 -18.16020 -17.87369 -17.37192 -17.05615 -16.70285 -16.18768 -15.94400 -15.42658 -15.19582 -14.99895 -14.71603 -14.57631 -14.24314 -14.09252 -13.79312 -13.66285 -13.55554 -12.95125 -12.89490 -12.80231 -12.55371 -12.09826 -11.81317 -11.61740 -11.49542 -11.41431 -11.36738 -11.11818 -11.00492 -10.79437 -10.51420 -10.23079 -9.50700 -9.47966 -9.05041 -8.97698 -8.36859 -8.20697 -7.45347 -6.59206 -4.17698 0.45448 1.06831 1.85776 2.06665 2.53353 2.88239 3.03456 3.04326 3.06763 3.12737 3.21010 3.49441 3.85711 4.17777 4.40946 4.48945 4.64733 4.72636 4.84027 4.86694 4.89301 4.95790 4.98276 5.06548 5.12524 5.18136 5.23006 5.53161 5.61649 5.75759 5.84907 6.02326 6.04304 6.20892 6.23160 6.46437 6.55929 6.64255 6.71140 6.88391 6.96372 7.07819 7.14777 7.27261 7.35523 7.60484 7.85316 7.96024 8.85802 9.52160 10.57930 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.002569 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.020344 B =10896.268327 C =12207.060645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.301 6.301 3 C 0.097 3.903 4 C -0.154 4.154 5 C -0.120 4.120 6 C -0.063 4.063 7 C -0.177 4.177 8 C 0.130 3.870 9 O -0.294 6.294 10 C 0.378 3.622 11 H 0.083 0.917 12 C -0.220 4.220 13 C -0.045 4.045 14 C -0.194 4.194 15 C 0.167 3.833 16 O -0.168 6.168 17 C -0.394 4.394 18 H 0.096 0.904 19 C 0.041 3.959 20 N -0.856 5.856 21 Si 0.944 3.056 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.237 4.237 26 C -0.032 4.032 27 N -0.738 5.738 28 C 0.573 3.427 29 O -0.526 6.526 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.272 0.728 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.360 15.240 -4.928 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.214 6.214 3 C 0.051 3.949 4 C -0.173 4.173 5 C -0.138 4.138 6 C -0.082 4.082 7 C -0.181 4.181 8 C 0.083 3.917 9 O -0.205 6.205 10 C 0.238 3.762 11 H 0.101 0.899 12 C -0.222 4.222 13 C -0.063 4.063 14 C -0.213 4.213 15 C 0.112 3.888 16 O -0.069 6.069 17 C -0.469 4.469 18 H 0.113 0.887 19 C -0.165 4.165 20 N -0.489 5.489 21 Si 0.768 3.232 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.256 4.256 26 C -0.051 4.051 27 N -0.400 5.400 28 C 0.361 3.639 29 O -0.403 6.403 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.082 0.918 39 H 0.150 0.850 40 H 0.131 0.869 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -16.864 15.114 -4.432 23.075 hybrid contribution -0.046 -0.665 -0.453 0.806 sum -16.910 14.449 -4.885 22.772 Atomic orbital electron populations 1.23107 0.78401 1.04350 1.01104 1.86254 1.21099 1.25251 1.88787 1.18289 0.89149 0.85638 1.01797 1.21301 1.00275 0.91482 1.04225 1.20881 0.94139 0.97193 1.01636 1.20926 0.93184 0.97534 0.96578 1.19997 0.93703 0.93203 1.11225 1.18372 0.88134 0.85950 0.99263 1.86375 1.29678 1.32398 1.72065 1.20873 0.78165 0.83735 0.93404 0.89934 1.18786 1.04592 0.95034 1.03754 1.20426 0.94322 0.97000 0.94574 1.20183 1.05885 0.92167 1.03048 1.19455 0.89040 0.88420 0.91910 1.83978 1.50790 1.16439 1.55737 1.21453 1.26825 0.84766 1.13906 0.88651 1.25360 0.95646 0.98652 0.96799 1.70042 1.24470 1.28103 1.26308 0.85604 0.78674 0.79932 0.78992 1.18925 1.20005 1.19991 1.21121 1.02713 0.99869 1.01882 1.20487 0.96139 0.91419 0.97083 1.46945 1.11687 1.10644 1.70709 1.18090 0.87026 0.82892 0.75932 1.90813 1.70100 1.30802 1.48564 0.92654 0.92659 0.87919 0.84345 0.84731 0.84191 0.86832 0.86038 0.91781 0.84989 0.86867 0.74376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.62 10.35 -32.54 -0.34 -3.96 16 3 C 0.10 1.17 6.69 -39.24 -0.26 0.90 16 4 C -0.15 -1.36 9.04 -39.34 -0.36 -1.72 16 5 C -0.12 -1.02 10.03 -39.56 -0.40 -1.41 16 6 C -0.06 -0.68 9.68 -39.30 -0.38 -1.06 16 7 C -0.18 -2.38 5.81 -104.89 -0.61 -2.99 16 8 C 0.13 1.82 6.50 -38.61 -0.25 1.57 16 9 O -0.29 -4.63 9.90 -31.38 -0.31 -4.94 16 10 C 0.38 5.41 3.90 -5.29 -0.02 5.39 16 11 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.22 -3.62 5.34 -104.57 -0.56 -4.17 16 13 C -0.04 -0.77 8.96 -39.61 -0.36 -1.13 16 14 C -0.19 -3.90 9.99 -39.40 -0.39 -4.30 16 15 C 0.17 3.84 6.65 -39.11 -0.26 3.58 16 16 O -0.17 -4.58 9.76 0.06 0.00 -4.58 16 17 C -0.39 -10.52 9.49 30.89 0.29 -10.22 16 18 H 0.10 2.34 5.20 -52.49 -0.27 2.06 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -24.26 13.67 55.48 0.76 -23.50 16 21 Si 0.94 19.69 29.55 -169.99 -5.02 14.67 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.24 -4.81 9.17 -39.39 -0.36 -5.17 16 26 C -0.03 -0.56 9.69 -39.61 -0.38 -0.94 16 27 N -0.74 -10.16 4.74 -60.56 -0.29 -10.45 16 28 C 0.57 8.51 7.95 -12.12 -0.10 8.42 16 29 O -0.53 -8.95 17.55 5.29 0.09 -8.85 16 30 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 31 H 0.05 0.28 7.66 -51.93 -0.40 -0.11 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.14 0.80 6.28 -52.49 -0.33 0.47 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 1.38 7.88 -52.49 -0.41 0.96 16 36 H 0.11 1.74 7.15 -52.49 -0.38 1.37 16 37 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.42 5.34 7.85 -40.82 -0.32 5.02 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -32.42 355.05 -7.30 -39.72 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.05 Total: 7.63 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.50 Total: -11.10 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.47 Total: -33.95 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.55 Total: -22.33 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.42 -7.30 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746988105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.372 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds