Wall clock time and date at job start Sat Apr 11 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36003 * 116.99977 * 2 1 4 4 C 1.38620 * 120.15859 * 0.02562 * 3 2 1 5 5 C 1.38501 * 120.55296 * 180.26563 * 4 3 2 6 6 C 1.38031 * 120.39888 * 359.51188 * 5 4 3 7 7 C 1.39202 * 119.57614 * 0.46384 * 6 5 4 8 8 C 1.38789 * 120.15541 * 180.02562 * 3 2 1 9 9 O 1.35628 * 121.64836 * 0.02562 * 8 3 2 10 10 C 1.42765 * 117.24569 * 146.97334 * 9 8 3 11 11 H 1.09003 * 109.18844 * 288.45499 * 10 9 8 12 12 C 1.50702 * 109.18839 * 169.19444 * 10 9 8 13 13 C 1.38309 * 119.92857 * 268.30768 * 12 10 9 14 14 C 1.38094 * 120.06419 * 179.72733 * 13 12 10 15 15 C 1.38875 * 119.93518 * 0.56782 * 14 13 12 16 16 O 1.35746 * 120.07206 * 179.68389 * 15 14 13 17 17 C 1.34830 * 117.00080 * 174.48889 * 16 15 14 18 18 H 1.08000 * 119.99984 * 5.05351 * 17 16 15 19 19 C 1.38657 * 119.99924 * 185.06136 * 17 16 15 20 20 N 1.31557 * 120.00237 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99797 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.46968 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46763 * 119.99750 * 21 19 17 24 24 H 1.48499 * 109.46951 * 239.99722 * 21 19 17 25 25 C 1.38888 * 119.85965 * 359.70315 * 15 14 13 26 26 C 1.38099 * 119.92758 * 0.02562 * 25 15 14 27 27 N 1.46324 * 110.91225 * 48.82293 * 10 9 8 28 28 C 1.35351 * 120.12103 * 326.57676 * 27 10 9 29 29 O 1.21586 * 121.13794 * 183.21069 * 28 27 10 30 30 H 1.09002 * 109.46719 * 299.99873 * 1 2 3 31 31 H 1.08994 * 109.47304 * 59.99563 * 1 2 3 32 32 H 1.08995 * 109.47380 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.72559 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.80018 * 179.74375 * 5 4 3 35 35 H 1.07999 * 120.20990 * 180.23710 * 6 5 4 36 36 H 1.07999 * 119.96183 * 359.97438 * 13 12 10 37 37 H 1.08003 * 120.03047 * 180.27009 * 14 13 12 38 38 H 0.96991 * 119.99943 * 180.02562 * 20 19 17 39 39 H 1.07995 * 120.03059 * 180.02562 * 25 15 14 40 40 H 1.07996 * 119.95877 * 179.97438 * 26 25 15 41 41 H 0.97003 * 119.94089 * 146.54735 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2946 2.3764 0.0005 5 6 1.9149 3.6148 -0.0050 6 6 3.2921 3.7062 -0.0010 7 6 4.0578 2.5436 -0.0011 8 6 3.4322 1.2882 -0.0005 9 8 4.2063 0.1745 -0.0016 10 6 5.4529 0.2457 -0.6938 11 1 5.2656 0.2697 -1.7674 12 6 6.2738 -0.9738 -0.3624 13 6 7.1596 -0.9417 0.6993 14 6 7.9092 -2.0594 1.0089 15 6 7.7815 -3.2127 0.2458 16 8 8.5217 -4.3109 0.5438 17 6 8.2673 -5.4307 -0.1628 18 1 7.5618 -5.4049 -0.9802 19 6 8.9114 -6.6154 0.1599 20 7 9.7710 -6.6468 1.1553 21 14 8.5584 -8.1670 -0.8187 22 1 7.5608 -7.8683 -1.8772 23 1 9.8141 -8.6540 -1.4444 24 1 8.0194 -9.2122 0.0881 25 6 6.8952 -3.2399 -0.8232 26 6 6.1443 -2.1207 -1.1243 27 7 6.1965 1.4455 -0.3084 28 6 5.5346 2.5853 -0.0007 29 8 6.1349 3.6085 0.2657 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 0.2162 2.3177 0.0005 34 1 1.3173 4.5144 -0.0087 35 1 3.7726 4.6734 -0.0014 36 1 7.2622 -0.0429 1.2891 37 1 8.5975 -2.0352 1.8408 38 1 10.2218 -7.4754 1.3808 39 1 6.7934 -4.1354 -1.4182 40 1 5.4553 -2.1412 -1.9557 41 1 7.1657 1.4238 -0.2730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746988105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:47 Heat of formation + Delta-G solvation = -88.588882 kcal Electronic energy + Delta-G solvation = -28430.800290 eV Core-core repulsion = 24241.920597 eV Total energy + Delta-G solvation = -4188.879692 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.48005 -40.94654 -40.41907 -39.44821 -38.43933 -37.75442 -35.39313 -34.33130 -32.36895 -31.93872 -31.30012 -30.55889 -28.16559 -27.67854 -26.20807 -25.30876 -23.77463 -23.32473 -22.47937 -21.09755 -20.18864 -19.87973 -19.20637 -18.55848 -18.29427 -17.72174 -17.20875 -16.75231 -16.51898 -16.39509 -16.17658 -16.09538 -15.97512 -15.61117 -15.45304 -15.23953 -14.96665 -14.71871 -14.43940 -14.00690 -13.77231 -13.57174 -13.49261 -13.13090 -12.99962 -12.68903 -12.54350 -12.47371 -12.29117 -12.17804 -12.08916 -12.03042 -11.38545 -11.25767 -10.86455 -10.62150 -9.90872 -9.89772 -9.20343 -9.01778 -8.50898 -6.19504 -0.43658 0.21596 0.40511 0.49689 1.36511 1.43236 1.51482 1.54892 1.87116 2.06054 2.16092 2.25196 2.62664 2.80528 3.11077 3.22483 3.35538 3.52053 3.79162 3.84121 3.87884 4.05957 4.07834 4.14692 4.25555 4.36868 4.43227 4.46167 4.46636 4.65121 4.80033 4.87929 5.01188 5.04258 5.08343 5.14876 5.25974 5.36949 5.48016 5.51589 5.60495 5.63569 5.67092 5.97653 6.02388 6.04559 6.47161 6.84118 6.93576 7.70017 8.71857 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.002569 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.020344 B =10896.268327 C =12207.060645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.088 3.912 4 C -0.139 4.139 5 C -0.102 4.102 6 C -0.070 4.070 7 C -0.194 4.194 8 C 0.098 3.902 9 O -0.315 6.315 10 C 0.382 3.618 11 H 0.108 0.892 12 C -0.195 4.195 13 C -0.038 4.038 14 C -0.204 4.204 15 C 0.134 3.866 16 O -0.223 6.223 17 C -0.415 4.415 18 H 0.108 0.892 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.020 2.980 22 H -0.247 1.247 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.240 4.240 26 C -0.026 4.026 27 N -0.735 5.735 28 C 0.571 3.429 29 O -0.555 6.555 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.118 0.882 38 H 0.274 0.726 39 H 0.131 0.869 40 H 0.152 0.848 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.490 17.500 -6.667 28.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.042 3.958 4 C -0.158 4.158 5 C -0.119 4.119 6 C -0.089 4.089 7 C -0.198 4.198 8 C 0.052 3.948 9 O -0.227 6.227 10 C 0.242 3.758 11 H 0.125 0.875 12 C -0.196 4.196 13 C -0.056 4.056 14 C -0.224 4.224 15 C 0.082 3.918 16 O -0.129 6.129 17 C -0.490 4.490 18 H 0.125 0.875 19 C -0.219 4.219 20 N -0.555 5.555 21 Si 0.839 3.161 22 H -0.171 1.171 23 H -0.194 1.194 24 H -0.195 1.195 25 C -0.260 4.260 26 C -0.045 4.045 27 N -0.396 5.396 28 C 0.360 3.640 29 O -0.434 6.434 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.193 0.807 34 H 0.193 0.807 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.083 0.917 39 H 0.148 0.852 40 H 0.170 0.830 41 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -21.042 17.425 -6.190 28.013 hybrid contribution 0.918 -0.921 0.083 1.303 sum -20.124 16.504 -6.107 26.733 Atomic orbital electron populations 1.23429 0.75947 1.05670 1.02860 1.86210 1.23760 1.25721 1.88853 1.18533 0.88685 0.86785 1.01785 1.21754 1.01954 0.90337 1.01749 1.21351 0.93281 0.98638 0.98672 1.21185 0.94370 0.96938 0.96401 1.20000 0.92741 0.94125 1.12955 1.18601 0.88948 0.85321 1.01963 1.86272 1.29858 1.33733 1.72814 1.20860 0.77860 0.82411 0.94635 0.87460 1.19158 1.02977 0.95677 1.01832 1.20656 0.93460 0.96681 0.94845 1.20370 1.06478 0.92483 1.03044 1.19966 0.90124 0.88238 0.93463 1.83957 1.53508 1.17677 1.57745 1.21943 1.27356 0.85291 1.14434 0.87453 1.26636 0.95255 1.02097 0.97931 1.70185 1.26973 1.29161 1.29187 0.84511 0.78958 0.74988 0.77663 1.17056 1.19393 1.19517 1.21248 1.02537 1.01054 1.01118 1.20840 0.95576 0.90183 0.97853 1.46904 1.11845 1.10431 1.70439 1.18392 0.87925 0.82487 0.75190 1.90792 1.70866 1.31709 1.50054 0.91051 0.90558 0.87097 0.80665 0.80698 0.83587 0.84683 0.86417 0.91700 0.85178 0.83043 0.74125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -7.13 10.35 -81.35 -0.84 -7.97 16 3 C 0.09 1.86 6.69 22.49 0.15 2.01 16 4 C -0.14 -1.81 9.04 22.42 0.20 -1.61 16 5 C -0.10 -1.23 10.03 22.28 0.22 -1.00 16 6 C -0.07 -1.30 9.68 22.45 0.22 -1.09 16 7 C -0.19 -4.85 5.81 -20.04 -0.12 -4.97 16 8 C 0.10 2.55 6.50 22.90 0.15 2.70 16 9 O -0.31 -9.38 9.90 -77.18 -0.76 -10.14 16 10 C 0.38 10.14 3.90 85.67 0.33 10.48 16 11 H 0.11 2.38 8.08 -2.39 -0.02 2.36 16 12 C -0.19 -6.09 5.34 -19.83 -0.11 -6.19 16 13 C -0.04 -1.30 8.96 22.25 0.20 -1.10 16 14 C -0.20 -8.54 9.99 22.39 0.22 -8.32 16 15 C 0.13 6.42 6.65 22.58 0.15 6.57 16 16 O -0.22 -13.03 9.76 -22.70 -0.22 -13.25 16 17 C -0.41 -23.29 9.49 67.92 0.64 -22.64 16 18 H 0.11 5.45 5.20 -2.91 -0.02 5.44 16 19 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 20 N -0.92 -55.26 13.67 21.61 0.30 -54.97 16 21 Si 1.02 41.51 29.55 68.60 2.03 43.54 16 22 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 23 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 25 C -0.24 -9.84 9.17 22.39 0.21 -9.64 16 26 C -0.03 -0.85 9.69 22.25 0.22 -0.63 16 27 N -0.73 -19.22 4.74 -564.10 -2.67 -21.90 16 28 C 0.57 16.35 7.95 86.66 0.69 17.04 16 29 O -0.55 -18.55 17.55 -3.99 -0.07 -18.62 16 30 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 31 H 0.08 0.45 7.66 -2.39 -0.02 0.43 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.18 0.94 6.28 -2.91 -0.02 0.92 16 34 H 0.18 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.15 2.51 7.88 -2.91 -0.02 2.48 16 36 H 0.14 4.01 7.15 -2.91 -0.02 3.99 16 37 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.27 15.07 8.31 -92.72 -0.77 14.30 16 39 H 0.13 5.32 5.64 -2.91 -0.02 5.30 16 40 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 41 H 0.42 10.26 7.85 -92.71 -0.73 9.53 16 Total: -1.00 -77.02 355.05 3.10 -73.92 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.38 Total: 27.23 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 4.96 Total: -17.83 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -2.38 Total: -76.86 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.90 Total: -49.99 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -77.02 3.10 -73.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746988105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.669 kcal (2) G-P(sol) polarization free energy of solvation -77.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds