Wall clock time and date at job start Sat Apr 11 2020 06:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46964 * 2 1 4 4 C 1.52997 * 109.47058 * 239.99868 * 2 1 3 5 5 N 1.46494 * 109.47168 * 179.97438 * 4 2 1 6 6 C 1.34780 * 119.99917 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00129 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99933 * 180.02562 * 6 5 4 9 9 C 1.50701 * 109.47242 * 179.97438 * 8 6 5 10 10 C 1.38299 * 119.93217 * 269.72899 * 9 8 6 11 11 C 1.38093 * 120.06953 * 179.72477 * 10 9 8 12 12 C 1.38883 * 119.92808 * 0.56550 * 11 10 9 13 13 O 1.35754 * 120.06438 * 179.68623 * 12 11 10 14 14 C 1.34826 * 116.99724 * 174.49160 * 13 12 11 15 15 H 1.07998 * 120.00100 * 5.04739 * 14 13 12 16 16 C 1.38654 * 119.99970 * 185.05457 * 14 13 12 17 17 N 1.31557 * 120.00012 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99959 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47263 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47148 * 119.99951 * 18 16 14 21 21 H 1.48504 * 109.47096 * 239.99883 * 18 16 14 22 22 C 1.38871 * 119.86468 * 359.70509 * 12 11 10 23 23 C 1.38101 * 119.93230 * 0.02562 * 22 12 11 24 24 S 1.81394 * 109.47319 * 119.99651 * 2 1 3 25 25 C 1.81401 * 101.92555 * 305.00100 * 24 2 1 26 26 O 1.42104 * 108.57857 * 59.48584 * 24 2 1 27 27 O 1.42097 * 108.58069 * 190.51400 * 24 2 1 28 28 H 1.08992 * 109.47306 * 59.99654 * 1 2 3 29 29 H 1.08992 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46933 * 300.00193 * 1 2 3 31 31 H 1.09002 * 109.46939 * 59.99614 * 4 2 1 32 32 H 1.09001 * 109.46887 * 300.00182 * 4 2 1 33 33 H 0.97002 * 120.00191 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.47056 * 59.99417 * 8 6 5 35 35 H 1.09001 * 109.46884 * 299.99904 * 8 6 5 36 36 H 1.08005 * 119.96050 * 359.97425 * 10 9 8 37 37 H 1.07999 * 120.03730 * 180.26989 * 11 10 9 38 38 H 0.97002 * 120.00021 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.03853 * 179.97438 * 22 12 11 40 40 H 1.07997 * 119.96732 * 179.97438 * 23 22 12 41 41 H 1.09009 * 109.46965 * 59.99745 * 25 24 2 42 42 H 1.08995 * 109.47154 * 179.97438 * 25 24 2 43 43 H 1.09000 * 109.47017 * 300.00055 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7207 -1.2495 6 6 4.1788 -1.3038 -2.2607 7 8 3.5724 -1.8294 -3.1701 8 6 5.6858 -1.3038 -2.2608 9 6 6.1882 -2.0142 -3.4913 10 6 6.4236 -3.3764 -3.4539 11 6 6.8785 -4.0312 -4.5814 12 6 7.1108 -3.3182 -5.7504 13 8 7.5641 -3.9580 -6.8586 14 6 7.6597 -3.2301 -7.9895 15 1 7.4597 -2.1690 -7.9672 16 6 8.0146 -3.8438 -9.1810 17 7 8.2585 -5.1363 -9.2081 18 14 8.1464 -2.8355 -10.7480 19 1 7.8252 -1.4162 -10.4518 20 1 9.5291 -2.9285 -11.2817 21 1 7.1904 -3.3600 -11.7561 22 6 6.8788 -1.9494 -5.7831 23 6 6.4185 -1.3012 -4.6538 24 16 2.1347 -0.8550 1.4811 25 6 1.2999 0.0578 2.8079 26 8 1.6409 -2.1874 1.4681 27 8 3.5342 -0.6348 1.5913 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6766 -0.2075 -2.1392 32 1 1.6766 -1.7489 -1.2492 33 1 3.9900 -0.3001 -0.5224 34 1 6.0492 -1.8180 -1.3710 35 1 6.0491 -0.2761 -2.2603 36 1 6.2476 -3.9294 -2.5430 37 1 7.0580 -5.0958 -4.5529 38 1 8.5065 -5.5658 -10.0417 39 1 7.0589 -1.3920 -6.6906 40 1 6.2383 -0.2367 -4.6786 41 1 0.2203 -0.0209 2.6795 42 1 1.5823 -0.3640 3.7725 43 1 1.5950 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754206413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:59 Heat of formation + Delta-G solvation = -108.409961 kcal Electronic energy + Delta-G solvation = -26674.582624 eV Core-core repulsion = 22620.287376 eV Total energy + Delta-G solvation = -4054.295247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.86447 -38.76641 -37.54785 -36.81127 -36.48107 -36.04824 -33.30340 -32.38459 -31.28793 -30.10159 -30.04643 -27.46295 -25.91497 -24.90388 -23.15464 -21.88376 -21.11895 -20.05135 -19.29437 -17.90188 -17.72444 -17.32637 -16.86831 -16.63447 -16.43429 -15.96319 -15.42619 -14.71659 -14.53381 -14.42138 -14.15488 -13.92332 -13.84931 -13.70711 -13.52710 -13.43505 -13.27645 -13.04477 -12.85052 -12.61960 -12.57016 -12.48771 -12.39683 -12.05707 -11.77244 -11.56320 -11.42095 -11.21383 -10.83187 -10.79001 -10.67657 -10.52509 -10.36441 -9.73924 -9.29170 -9.24188 -8.75864 -8.06015 -7.08018 -6.38069 -3.96357 -0.62493 2.11378 2.32472 2.34251 2.76725 2.97036 3.05698 3.17142 3.18568 3.23893 3.45593 3.80517 3.97006 4.02680 4.18991 4.38294 4.42386 4.61963 4.77720 4.91219 5.02444 5.06942 5.16051 5.17755 5.30267 5.36537 5.39420 5.41815 5.50147 5.77636 5.81431 5.94897 6.19242 6.30503 6.51005 6.79292 7.00305 7.13604 7.32040 7.38793 7.45825 7.53126 7.92777 8.07603 8.28944 9.07825 9.79384 10.80297 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029240 B = 0.001948 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.365455 B =14371.721085 C =14703.024877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.588 4.588 3 H 0.144 0.856 4 C 0.134 3.866 5 N -0.759 5.759 6 C 0.513 3.487 7 O -0.515 6.515 8 C -0.081 4.081 9 C -0.170 4.170 10 C -0.059 4.059 11 C -0.191 4.191 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.389 4.389 15 H 0.092 0.908 16 C 0.037 3.963 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.233 4.233 23 C -0.057 4.057 24 S 2.415 3.585 25 C -0.659 4.659 26 O -0.927 6.927 27 O -0.934 6.934 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.407 0.593 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.269 0.731 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 15.511 24.380 32.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.697 4.697 3 H 0.162 0.838 4 C 0.009 3.991 5 N -0.418 5.418 6 C 0.301 3.699 7 O -0.388 6.388 8 C -0.121 4.121 9 C -0.171 4.171 10 C -0.078 4.078 11 C -0.210 4.210 12 C 0.103 3.897 13 O -0.083 6.083 14 C -0.466 4.466 15 H 0.109 0.891 16 C -0.167 4.167 17 N -0.499 5.499 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.252 4.252 23 C -0.075 4.075 24 S 2.596 3.404 25 C -0.808 4.808 26 O -0.924 6.924 27 O -0.931 6.931 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.245 0.755 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.122 0.878 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.062 13.996 23.537 31.253 hybrid contribution -0.368 1.615 -0.436 1.713 sum -15.430 15.611 23.101 31.866 Atomic orbital electron populations 1.21687 0.88839 1.04848 1.04869 1.30356 1.07825 1.13984 1.17496 0.83787 1.21044 0.81266 1.01294 0.95534 1.46498 1.06211 1.61576 1.27529 1.21113 0.90892 0.77080 0.80863 1.90753 1.70241 1.42791 1.35049 1.20433 0.90149 1.02469 0.99058 1.18644 1.10005 0.94052 0.94411 1.20432 0.97269 0.93224 0.96852 1.20159 1.09308 0.99567 0.91957 1.19383 0.90995 0.90941 0.88389 1.83978 1.71332 1.37788 1.15175 1.21371 1.48433 0.92850 0.83926 0.89057 1.25289 0.96693 0.96157 0.98514 1.70054 1.43282 1.09063 1.27500 0.85646 0.78202 0.79184 0.80363 1.19144 1.20212 1.20189 1.21096 1.09844 0.94752 0.99494 1.20504 0.96806 0.98079 0.92114 1.08273 0.76474 0.77207 0.78459 1.30325 1.15174 1.15716 1.19601 1.93624 1.81774 1.31499 1.85487 1.93570 1.27718 1.86553 1.85261 0.89566 0.89944 0.90692 0.89071 0.89493 0.75542 0.88502 0.88754 0.87250 0.86513 0.92154 0.85605 0.87834 0.85016 0.84992 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.38 8.90 37.16 0.33 -0.05 16 2 C -0.59 -2.56 2.91 -26.73 -0.08 -2.64 16 3 H 0.14 0.22 8.14 -51.92 -0.42 -0.20 16 4 C 0.13 1.18 5.11 -4.05 -0.02 1.16 16 5 N -0.76 -8.22 5.22 -60.30 -0.31 -8.53 16 6 C 0.51 7.63 7.82 -10.98 -0.09 7.55 16 7 O -0.52 -10.00 16.03 5.56 0.09 -9.91 16 8 C -0.08 -1.12 5.83 -29.03 -0.17 -1.29 16 9 C -0.17 -3.13 4.38 -104.57 -0.46 -3.59 16 10 C -0.06 -1.16 9.69 -39.61 -0.38 -1.55 16 11 C -0.19 -4.34 9.99 -39.40 -0.39 -4.73 16 12 C 0.16 4.01 6.65 -39.11 -0.26 3.75 16 13 O -0.18 -5.33 9.76 0.05 0.00 -5.33 16 14 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 15 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -26.06 13.67 55.48 0.76 -25.30 16 18 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.23 -5.38 9.17 -39.40 -0.36 -5.74 16 23 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 24 S 2.42 14.40 4.69 -107.50 -0.50 13.90 16 25 C -0.66 -1.16 10.01 101.05 1.01 -0.15 16 26 O -0.93 -9.49 18.06 -57.83 -1.04 -10.53 16 27 O -0.93 -8.26 16.07 -57.83 -0.93 -9.19 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 -0.01 6.39 -51.93 -0.33 -0.35 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.41 3.56 6.41 -40.82 -0.26 3.30 16 34 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 35 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.11 1.83 8.06 -52.48 -0.42 1.40 16 37 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 40 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.13 -0.01 6.78 -51.92 -0.35 -0.36 16 42 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.13 -0.05 8.14 -51.92 -0.42 -0.47 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -40.33 375.57 -8.08 -48.41 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.72 Total: 3.49 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.05 Total: -18.80 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.44 Total: -33.84 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.88 Total: -34.97 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 14.40 SS G_CDS: -0.50 Total: 13.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -40.33 -8.08 -48.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754206413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.000 kcal (2) G-P(sol) polarization free energy of solvation -40.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds