Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46964 * 2 1 4 4 C 1.52997 * 109.47058 * 239.99868 * 2 1 3 5 5 N 1.46494 * 109.47168 * 179.97438 * 4 2 1 6 6 C 1.34780 * 119.99917 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00129 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99933 * 180.02562 * 6 5 4 9 9 C 1.50701 * 109.47242 * 179.97438 * 8 6 5 10 10 C 1.38299 * 119.93217 * 269.72899 * 9 8 6 11 11 C 1.38093 * 120.06953 * 179.72477 * 10 9 8 12 12 C 1.38883 * 119.92808 * 0.56550 * 11 10 9 13 13 O 1.35754 * 120.06438 * 179.68623 * 12 11 10 14 14 C 1.34826 * 116.99724 * 174.49160 * 13 12 11 15 15 H 1.07998 * 120.00100 * 5.04739 * 14 13 12 16 16 C 1.38654 * 119.99970 * 185.05457 * 14 13 12 17 17 N 1.31557 * 120.00012 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99959 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47263 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47148 * 119.99951 * 18 16 14 21 21 H 1.48504 * 109.47096 * 239.99883 * 18 16 14 22 22 C 1.38871 * 119.86468 * 359.70509 * 12 11 10 23 23 C 1.38101 * 119.93230 * 0.02562 * 22 12 11 24 24 S 1.81394 * 109.47319 * 119.99651 * 2 1 3 25 25 C 1.81401 * 101.92555 * 305.00100 * 24 2 1 26 26 O 1.42104 * 108.57857 * 59.48584 * 24 2 1 27 27 O 1.42097 * 108.58069 * 190.51400 * 24 2 1 28 28 H 1.08992 * 109.47306 * 59.99654 * 1 2 3 29 29 H 1.08992 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46933 * 300.00193 * 1 2 3 31 31 H 1.09002 * 109.46939 * 59.99614 * 4 2 1 32 32 H 1.09001 * 109.46887 * 300.00182 * 4 2 1 33 33 H 0.97002 * 120.00191 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.47056 * 59.99417 * 8 6 5 35 35 H 1.09001 * 109.46884 * 299.99904 * 8 6 5 36 36 H 1.08005 * 119.96050 * 359.97425 * 10 9 8 37 37 H 1.07999 * 120.03730 * 180.26989 * 11 10 9 38 38 H 0.97002 * 120.00021 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.03853 * 179.97438 * 22 12 11 40 40 H 1.07997 * 119.96732 * 179.97438 * 23 22 12 41 41 H 1.09009 * 109.46965 * 59.99745 * 25 24 2 42 42 H 1.08995 * 109.47154 * 179.97438 * 25 24 2 43 43 H 1.09000 * 109.47017 * 300.00055 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7207 -1.2495 6 6 4.1788 -1.3038 -2.2607 7 8 3.5724 -1.8294 -3.1701 8 6 5.6858 -1.3038 -2.2608 9 6 6.1882 -2.0142 -3.4913 10 6 6.4236 -3.3764 -3.4539 11 6 6.8785 -4.0312 -4.5814 12 6 7.1108 -3.3182 -5.7504 13 8 7.5641 -3.9580 -6.8586 14 6 7.6597 -3.2301 -7.9895 15 1 7.4597 -2.1690 -7.9672 16 6 8.0146 -3.8438 -9.1810 17 7 8.2585 -5.1363 -9.2081 18 14 8.1464 -2.8355 -10.7480 19 1 7.8252 -1.4162 -10.4518 20 1 9.5291 -2.9285 -11.2817 21 1 7.1904 -3.3600 -11.7561 22 6 6.8788 -1.9494 -5.7831 23 6 6.4185 -1.3012 -4.6538 24 16 2.1347 -0.8550 1.4811 25 6 1.2999 0.0578 2.8079 26 8 1.6409 -2.1874 1.4681 27 8 3.5342 -0.6348 1.5913 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6766 -0.2075 -2.1392 32 1 1.6766 -1.7489 -1.2492 33 1 3.9900 -0.3001 -0.5224 34 1 6.0492 -1.8180 -1.3710 35 1 6.0491 -0.2761 -2.2603 36 1 6.2476 -3.9294 -2.5430 37 1 7.0580 -5.0958 -4.5529 38 1 8.5065 -5.5658 -10.0417 39 1 7.0589 -1.3920 -6.6906 40 1 6.2383 -0.2367 -4.6786 41 1 0.2203 -0.0209 2.6795 42 1 1.5823 -0.3640 3.7725 43 1 1.5950 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754206413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = -140.994832 kcal Electronic energy + Delta-G solvation = -26675.995610 eV Core-core repulsion = 22620.287376 eV Total energy + Delta-G solvation = -4055.708233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16095 -40.45345 -38.32272 -38.08134 -37.23869 -36.87498 -34.41318 -34.04586 -32.75569 -31.78837 -30.36578 -28.63255 -27.40802 -26.35308 -23.68691 -23.64348 -22.59024 -21.33150 -19.85687 -19.76957 -18.87313 -18.18113 -18.14001 -17.55906 -16.96449 -16.68354 -16.59268 -16.34728 -16.00131 -15.86128 -15.52734 -15.13276 -15.05842 -14.64634 -14.43935 -14.27957 -14.10917 -13.96866 -13.77630 -13.70120 -13.54059 -13.16639 -13.12083 -13.04967 -12.97856 -12.78488 -12.50324 -12.38951 -12.28369 -12.25124 -12.09618 -11.94178 -11.22819 -11.18117 -11.01918 -10.77255 -10.25455 -9.77490 -8.91531 -8.47506 -6.15735 -1.00590 0.60408 0.65335 1.33713 1.42667 1.52946 1.61229 1.77325 2.09340 2.17592 2.63940 2.83290 3.05064 3.17060 3.35201 3.51320 3.70494 3.82899 4.03113 4.05820 4.11978 4.12773 4.19820 4.26016 4.42798 4.48339 4.58440 4.65282 4.69119 4.69844 4.79154 4.83363 5.00600 5.07377 5.14395 5.24173 5.29381 5.31196 5.55286 5.70537 5.76789 6.02657 6.20702 6.44222 6.96873 7.21303 7.78259 8.76271 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029240 B = 0.001948 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.365455 B =14371.721085 C =14703.024877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.569 4.569 3 H 0.182 0.818 4 C 0.121 3.879 5 N -0.742 5.742 6 C 0.512 3.488 7 O -0.572 6.572 8 C -0.083 4.083 9 C -0.147 4.147 10 C -0.061 4.061 11 C -0.206 4.206 12 C 0.113 3.887 13 O -0.233 6.233 14 C -0.414 4.414 15 H 0.101 0.899 16 C -0.026 4.026 17 N -0.922 5.922 18 Si 1.022 2.978 19 H -0.251 1.251 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.242 4.242 23 C -0.058 4.058 24 S 2.398 3.602 25 C -0.635 4.635 26 O -0.985 6.985 27 O -0.972 6.972 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.420 0.580 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.157 0.843 42 H 0.138 0.862 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.082 19.913 27.304 37.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.679 4.679 3 H 0.200 0.800 4 C -0.004 4.004 5 N -0.400 5.400 6 C 0.300 3.700 7 O -0.450 6.450 8 C -0.122 4.122 9 C -0.148 4.148 10 C -0.079 4.079 11 C -0.225 4.225 12 C 0.063 3.937 13 O -0.140 6.140 14 C -0.490 4.490 15 H 0.118 0.882 16 C -0.223 4.223 17 N -0.560 5.560 18 Si 0.841 3.159 19 H -0.175 1.175 20 H -0.191 1.191 21 H -0.194 1.194 22 C -0.261 4.261 23 C -0.076 4.076 24 S 2.585 3.415 25 C -0.789 4.789 26 O -0.982 6.982 27 O -0.969 6.969 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.260 0.740 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.130 0.870 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.175 0.825 42 H 0.156 0.844 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.786 18.417 26.548 36.411 hybrid contribution -0.018 0.393 -0.928 1.008 sum -16.803 18.810 25.620 35.952 Atomic orbital electron populations 1.21860 0.87258 1.04809 1.07105 1.30243 1.08990 1.14841 1.13809 0.80048 1.21220 0.79986 1.00982 0.98198 1.46363 1.07263 1.59910 1.26504 1.21210 0.91284 0.76640 0.80870 1.90752 1.71303 1.45537 1.37376 1.20584 0.89577 1.04599 0.97483 1.19227 1.06115 0.93697 0.95770 1.20873 0.95896 0.94261 0.96840 1.20415 1.09882 0.99750 0.92442 1.19919 0.92965 0.92500 0.88343 1.83941 1.74301 1.39341 1.16425 1.21878 1.49003 0.93539 0.84543 0.88150 1.26656 0.95911 0.97539 1.02228 1.70201 1.45697 1.11348 1.28782 0.84491 0.78671 0.77881 0.74868 1.17454 1.19052 1.19395 1.21231 1.10259 0.93881 1.00763 1.20934 0.95423 1.00027 0.91174 1.08370 0.76150 0.77015 0.80015 1.30123 1.15909 1.16352 1.16477 1.93562 1.82297 1.35672 1.86680 1.93515 1.30314 1.86969 1.86115 0.88990 0.91258 0.86839 0.88983 0.91694 0.74027 0.85639 0.84763 0.83978 0.86997 0.91836 0.86221 0.84047 0.82481 0.84366 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.28 8.90 71.98 0.64 0.36 16 2 C -0.57 -3.16 2.91 30.59 0.09 -3.07 16 3 H 0.18 -0.37 8.14 -2.39 -0.02 -0.39 16 4 C 0.12 1.96 5.11 86.38 0.44 2.40 16 5 N -0.74 -14.33 5.22 -463.07 -2.42 -16.75 16 6 C 0.51 14.09 7.82 87.66 0.69 14.78 16 7 O -0.57 -21.85 16.03 -3.04 -0.05 -21.90 16 8 C -0.08 -1.97 5.83 29.10 0.17 -1.80 16 9 C -0.15 -5.09 4.38 -19.83 -0.09 -5.18 16 10 C -0.06 -2.33 9.69 22.25 0.22 -2.11 16 11 C -0.21 -9.74 9.99 22.39 0.22 -9.52 16 12 C 0.11 6.10 6.65 22.58 0.15 6.25 16 13 O -0.23 -14.91 9.76 -22.74 -0.22 -15.13 16 14 C -0.41 -25.33 9.49 67.92 0.64 -24.69 16 15 H 0.10 5.67 5.20 -2.91 -0.02 5.65 16 16 C -0.03 -1.56 5.49 84.83 0.47 -1.09 16 17 N -0.92 -58.79 13.67 21.61 0.30 -58.50 16 18 Si 1.02 44.66 29.55 68.60 2.03 46.69 16 19 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 C -0.24 -11.45 9.17 22.39 0.21 -11.24 16 23 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 24 S 2.40 23.32 4.69 -56.49 -0.27 23.06 16 25 C -0.64 0.80 10.01 113.37 1.14 1.94 16 26 O -0.98 -20.04 18.06 -127.37 -2.30 -22.34 16 27 O -0.97 -15.25 16.07 -127.37 -2.05 -17.29 16 28 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.07 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.11 -0.65 6.39 -2.39 -0.02 -0.67 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.42 6.02 6.41 -92.71 -0.59 5.43 16 34 H 0.13 2.36 8.08 -2.39 -0.02 2.34 16 35 H 0.13 2.21 8.08 -2.39 -0.02 2.19 16 36 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 38 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.12 5.68 5.64 -2.91 -0.02 5.66 16 40 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.16 -0.91 6.78 -2.39 -0.02 -0.92 16 42 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.16 -1.17 8.14 -2.39 -0.02 -1.18 16 Total: -1.00 -98.00 375.57 0.67 -97.34 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.45 Total: 19.77 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 5.20 Total: -34.93 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.12 Total: -75.24 kcal Atomic # 8 Polarization: -72.06 SS G_CDS: -4.62 Total: -76.68 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 23.32 SS G_CDS: -0.27 Total: 23.06 kcal Total: -98.00 0.67 -97.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754206413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.658 kcal (2) G-P(sol) polarization free energy of solvation -98.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds