Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81402 * 109.47145 * 2 1 4 4 O 1.42109 * 110.53611 * 68.37747 * 3 2 1 5 5 O 1.42100 * 110.54585 * 291.62805 * 3 2 1 6 6 N 1.65600 * 104.45034 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99979 * 65.00199 * 6 3 2 8 8 C 1.53005 * 109.46945 * 164.99775 * 7 6 3 9 9 C 1.52995 * 109.46718 * 180.02562 * 8 7 6 10 10 O 1.45203 * 109.47237 * 180.02562 * 9 8 7 11 11 C 1.34771 * 117.00457 * 180.02562 * 10 9 8 12 12 O 1.21515 * 120.00026 * 359.97438 * 11 10 9 13 13 C 1.47501 * 120.00094 * 179.97438 * 11 10 9 14 14 C 1.40073 * 119.90212 * 180.02562 * 13 11 10 15 15 C 1.36300 * 120.10206 * 180.25905 * 14 13 11 16 16 C 1.40893 * 119.89711 * 359.51403 * 15 14 13 17 17 C 1.41091 * 120.10255 * 180.23496 * 16 15 14 18 18 H 1.08001 * 120.00415 * 204.81651 * 17 16 15 19 19 C 1.40248 * 119.99756 * 24.80634 * 17 16 15 20 20 N 1.30632 * 119.99956 * 17.73115 * 19 17 16 21 21 Si 1.86797 * 120.00167 * 197.73172 * 19 17 16 22 22 H 1.48501 * 109.47351 * 90.00385 * 21 19 17 23 23 H 1.48499 * 109.47050 * 210.00026 * 21 19 17 24 24 H 1.48500 * 109.47161 * 329.99778 * 21 19 17 25 25 C 1.40906 * 119.80286 * 0.50317 * 16 15 14 26 26 C 1.36297 * 119.89800 * 359.73440 * 25 16 15 27 27 H 1.09000 * 109.46791 * 59.99688 * 1 2 3 28 28 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47236 * 299.99511 * 1 2 3 30 30 H 1.09006 * 109.47195 * 240.00540 * 2 1 3 31 31 H 1.09001 * 109.47269 * 120.00541 * 2 1 3 32 32 H 0.96998 * 119.99930 * 245.00215 * 6 3 2 33 33 H 1.09003 * 109.46767 * 45.00055 * 7 6 3 34 34 H 1.09002 * 109.47260 * 285.00188 * 7 6 3 35 35 H 1.08996 * 109.46538 * 60.00529 * 8 7 6 36 36 H 1.08989 * 109.47292 * 300.00078 * 8 7 6 37 37 H 1.09003 * 109.47363 * 60.00579 * 9 8 7 38 38 H 1.09003 * 109.47813 * 300.00051 * 9 8 7 39 39 H 1.08002 * 119.94534 * 359.97438 * 14 13 11 40 40 H 1.08004 * 120.05042 * 179.74750 * 15 14 13 41 41 H 0.97000 * 120.00424 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.05172 * 179.70589 * 25 16 15 43 43 H 1.07997 * 119.94971 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3437 1.2371 5 8 1.8385 2.3439 -1.2369 6 7 3.7843 1.5653 0.0007 7 6 4.4675 0.9670 -1.1488 8 6 5.9627 1.2836 -1.0748 9 6 6.6760 0.6592 -2.2757 10 8 8.0950 0.9590 -2.2053 11 6 8.8719 0.4784 -3.1961 12 8 8.3772 -0.1738 -4.0941 13 6 10.3228 0.7441 -3.1906 14 6 11.1282 0.2440 -4.2217 15 6 12.4702 0.4826 -4.2178 16 6 13.0454 1.2422 -3.1799 17 6 14.4333 1.4960 -3.1743 18 1 14.9402 1.7056 -2.2439 19 6 15.1547 1.4759 -4.3768 20 7 14.5254 1.5702 -5.5177 21 14 17.0154 1.3143 -4.3472 22 1 17.3883 -0.1226 -4.3883 23 1 17.5915 2.0090 -5.5265 24 1 17.5459 1.9280 -3.1033 25 6 12.2314 1.7429 -2.1445 26 6 10.8911 1.4953 -2.1539 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.2982 1.8766 0.7622 33 1 4.0545 1.3767 -2.0706 34 1 4.3237 -0.1134 -1.1349 35 1 6.3756 0.8738 -0.1531 36 1 6.1064 2.3638 -1.0887 37 1 6.2630 1.0693 -3.1973 38 1 6.5323 -0.4213 -2.2623 39 1 10.6859 -0.3354 -5.0186 40 1 13.0911 0.0932 -5.0111 41 1 15.0243 1.5566 -6.3494 42 1 12.6688 2.3216 -1.3444 43 1 10.2664 1.8790 -1.3610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758691293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = -160.050014 kcal Electronic energy + Delta-G solvation = -25726.059539 eV Core-core repulsion = 21669.525011 eV Total energy + Delta-G solvation = -4056.534528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -39.64651 -37.61841 -37.47977 -36.70484 -36.31538 -35.49067 -33.99775 -33.66574 -31.76357 -30.25049 -29.60122 -26.53954 -25.29047 -24.57974 -22.48096 -21.84064 -21.07847 -19.89404 -19.67993 -18.09891 -17.63100 -17.20463 -16.77580 -16.70666 -16.31638 -16.08587 -15.44251 -15.39530 -14.94570 -14.59818 -14.09763 -13.77905 -13.56870 -13.43185 -13.16160 -13.02524 -12.96898 -12.68983 -12.48714 -12.37515 -12.26188 -12.10988 -12.03701 -11.86367 -11.64811 -11.52500 -11.34577 -11.27438 -11.06555 -11.00724 -10.72430 -10.16998 -10.15492 -9.90803 -9.62182 -9.50114 -9.42948 -7.78935 -7.68237 -7.12656 -4.71320 -0.17821 2.01824 2.26691 2.84631 2.90952 2.93833 2.99498 3.25495 3.37784 3.59899 3.68097 3.74336 4.06900 4.30296 4.43300 4.47314 4.62856 4.67662 4.82343 5.01991 5.11375 5.17243 5.19954 5.31711 5.39456 5.44906 5.48049 5.81937 5.84396 6.02847 6.18165 6.21527 6.52634 6.71160 6.77556 6.93567 7.01784 7.08148 7.37395 7.57317 7.75282 7.83168 7.97280 8.32516 8.52871 8.65109 8.70405 9.78662 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.039036 B = 0.001547 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.110834 B =18097.688810 C =18479.132536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.613 3.387 4 O -0.958 6.958 5 O -0.953 6.953 6 N -1.119 6.119 7 C 0.116 3.884 8 C -0.126 4.126 9 C 0.069 3.931 10 O -0.361 6.361 11 C 0.515 3.485 12 O -0.551 6.551 13 C -0.276 4.276 14 C -0.032 4.032 15 C -0.184 4.184 16 C 0.131 3.869 17 C -0.434 4.434 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.763 5.763 21 Si 0.917 3.083 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.240 4.240 26 C -0.028 4.028 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.420 0.580 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.289 0.711 42 H 0.100 0.900 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.270 -3.439 9.131 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.704 3.296 4 O -0.948 6.948 5 O -0.943 6.943 6 N -0.879 5.879 7 C -0.011 4.011 8 C -0.165 4.165 9 C -0.007 4.007 10 O -0.279 6.279 11 C 0.367 3.633 12 O -0.445 6.445 13 C -0.278 4.278 14 C -0.051 4.051 15 C -0.203 4.203 16 C 0.127 3.873 17 C -0.461 4.461 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.385 5.385 21 Si 0.740 3.260 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.259 4.259 26 C -0.046 4.046 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.255 0.745 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.996 -2.855 8.451 20.987 hybrid contribution 1.084 -0.758 0.108 1.327 sum -17.913 -3.614 8.560 20.179 Atomic orbital electron populations 1.21511 0.90394 1.05191 1.03567 1.30506 1.07400 1.26490 1.11817 1.04977 0.73051 0.77201 0.74354 1.93616 1.83086 1.72990 1.45129 1.93620 1.83253 1.71889 1.45540 1.55547 1.26022 1.78181 1.28146 1.21209 0.93553 0.97686 0.88607 1.21663 0.92497 1.03216 0.99124 1.22668 0.79437 1.00262 0.98333 1.86565 1.19376 1.72303 1.49701 1.21580 0.88059 0.75560 0.78083 1.90704 1.75692 1.40703 1.37367 1.18218 0.87236 1.18489 1.03902 1.20460 0.93644 0.96049 0.94983 1.20979 0.93456 1.03662 1.02245 1.17859 0.92964 0.86324 0.90134 1.19945 0.93073 1.38671 0.94394 0.89421 1.26173 1.02266 0.91794 0.94811 1.69736 1.39419 1.30044 0.99316 0.86154 0.80699 0.79796 0.79349 1.18804 1.19894 1.18177 1.20720 0.93156 1.08848 1.03183 1.20539 0.94912 0.94041 0.95135 0.90827 0.89925 0.90898 0.84940 0.84828 0.74515 0.89619 0.91354 0.89925 0.89687 0.91377 0.91551 0.88036 0.85934 0.89917 0.88202 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.92 37.16 0.37 -0.30 16 2 C -0.63 -2.78 6.79 37.16 0.25 -2.52 16 3 S 2.61 20.03 5.46 -107.50 -0.59 19.44 16 4 O -0.96 -10.36 18.08 -57.54 -1.04 -11.40 16 5 O -0.95 -10.85 17.50 -57.54 -1.01 -11.85 16 6 N -1.12 -7.42 5.89 -10.61 -0.06 -7.49 16 7 C 0.12 0.82 6.13 -4.04 -0.02 0.80 16 8 C -0.13 -1.16 5.74 -26.73 -0.15 -1.32 16 9 C 0.07 0.90 5.48 37.16 0.20 1.10 16 10 O -0.36 -6.43 9.45 -40.68 -0.38 -6.82 16 11 C 0.51 11.03 7.89 34.51 0.27 11.31 16 12 O -0.55 -12.66 16.11 -19.28 -0.31 -12.97 16 13 C -0.28 -6.35 5.89 -104.75 -0.62 -6.97 16 14 C -0.03 -0.78 9.52 -39.59 -0.38 -1.16 16 15 C -0.18 -4.59 8.63 -39.28 -0.34 -4.93 16 16 C 0.13 3.25 5.57 -106.80 -0.60 2.66 16 17 C -0.43 -10.46 9.04 -37.75 -0.34 -10.80 16 18 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 19 C 0.07 1.64 5.14 -17.31 -0.09 1.55 16 20 N -0.76 -18.06 10.95 55.56 0.61 -17.45 16 21 Si 0.92 16.78 29.60 -169.99 -5.03 11.75 16 22 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 25 C -0.24 -5.51 9.73 -39.27 -0.38 -5.89 16 26 C -0.03 -0.60 9.55 -39.59 -0.38 -0.98 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.42 2.32 8.62 -34.47 -0.30 2.02 16 33 H 0.09 0.64 7.70 -51.93 -0.40 0.24 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.82 8.14 -51.94 -0.42 0.39 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 40 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 41 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 42 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.10 1.97 7.59 -52.49 -0.40 1.58 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -32.79 382.73 -10.26 -43.05 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.02 Total: 5.42 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.20 Total: -17.46 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.55 Total: -24.93 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -2.74 Total: -43.04 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: 20.03 SS G_CDS: -0.59 Total: 19.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.79 -10.26 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758691293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.000 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds