Wall clock time and date at job start Sat Apr 11 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81402 * 109.47145 * 2 1 4 4 O 1.42109 * 110.53611 * 68.37747 * 3 2 1 5 5 O 1.42100 * 110.54585 * 291.62805 * 3 2 1 6 6 N 1.65600 * 104.45034 * 179.97438 * 3 2 1 7 7 C 1.46499 * 119.99979 * 65.00199 * 6 3 2 8 8 C 1.53005 * 109.46945 * 164.99775 * 7 6 3 9 9 C 1.52995 * 109.46718 * 180.02562 * 8 7 6 10 10 O 1.45203 * 109.47237 * 180.02562 * 9 8 7 11 11 C 1.34771 * 117.00457 * 180.02562 * 10 9 8 12 12 O 1.21515 * 120.00026 * 359.97438 * 11 10 9 13 13 C 1.47501 * 120.00094 * 179.97438 * 11 10 9 14 14 C 1.40073 * 119.90212 * 180.02562 * 13 11 10 15 15 C 1.36300 * 120.10206 * 180.25905 * 14 13 11 16 16 C 1.40893 * 119.89711 * 359.51403 * 15 14 13 17 17 C 1.41091 * 120.10255 * 180.23496 * 16 15 14 18 18 H 1.08001 * 120.00415 * 204.81651 * 17 16 15 19 19 C 1.40248 * 119.99756 * 24.80634 * 17 16 15 20 20 N 1.30632 * 119.99956 * 17.73115 * 19 17 16 21 21 Si 1.86797 * 120.00167 * 197.73172 * 19 17 16 22 22 H 1.48501 * 109.47351 * 90.00385 * 21 19 17 23 23 H 1.48499 * 109.47050 * 210.00026 * 21 19 17 24 24 H 1.48500 * 109.47161 * 329.99778 * 21 19 17 25 25 C 1.40906 * 119.80286 * 0.50317 * 16 15 14 26 26 C 1.36297 * 119.89800 * 359.73440 * 25 16 15 27 27 H 1.09000 * 109.46791 * 59.99688 * 1 2 3 28 28 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47236 * 299.99511 * 1 2 3 30 30 H 1.09006 * 109.47195 * 240.00540 * 2 1 3 31 31 H 1.09001 * 109.47269 * 120.00541 * 2 1 3 32 32 H 0.96998 * 119.99930 * 245.00215 * 6 3 2 33 33 H 1.09003 * 109.46767 * 45.00055 * 7 6 3 34 34 H 1.09002 * 109.47260 * 285.00188 * 7 6 3 35 35 H 1.08996 * 109.46538 * 60.00529 * 8 7 6 36 36 H 1.08989 * 109.47292 * 300.00078 * 8 7 6 37 37 H 1.09003 * 109.47363 * 60.00579 * 9 8 7 38 38 H 1.09003 * 109.47813 * 300.00051 * 9 8 7 39 39 H 1.08002 * 119.94534 * 359.97438 * 14 13 11 40 40 H 1.08004 * 120.05042 * 179.74750 * 15 14 13 41 41 H 0.97000 * 120.00424 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.05172 * 179.70589 * 25 16 15 43 43 H 1.07997 * 119.94971 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3437 1.2371 5 8 1.8385 2.3439 -1.2369 6 7 3.7843 1.5653 0.0007 7 6 4.4675 0.9670 -1.1488 8 6 5.9627 1.2836 -1.0748 9 6 6.6760 0.6592 -2.2757 10 8 8.0950 0.9590 -2.2053 11 6 8.8719 0.4784 -3.1961 12 8 8.3772 -0.1738 -4.0941 13 6 10.3228 0.7441 -3.1906 14 6 11.1282 0.2440 -4.2217 15 6 12.4702 0.4826 -4.2178 16 6 13.0454 1.2422 -3.1799 17 6 14.4333 1.4960 -3.1743 18 1 14.9402 1.7056 -2.2439 19 6 15.1547 1.4759 -4.3768 20 7 14.5254 1.5702 -5.5177 21 14 17.0154 1.3143 -4.3472 22 1 17.3883 -0.1226 -4.3883 23 1 17.5915 2.0090 -5.5265 24 1 17.5459 1.9280 -3.1033 25 6 12.2314 1.7429 -2.1445 26 6 10.8911 1.4953 -2.1539 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.2982 1.8766 0.7622 33 1 4.0545 1.3767 -2.0706 34 1 4.3237 -0.1134 -1.1349 35 1 6.3756 0.8738 -0.1531 36 1 6.1064 2.3638 -1.0887 37 1 6.2630 1.0693 -3.1973 38 1 6.5323 -0.4213 -2.2623 39 1 10.6859 -0.3354 -5.0186 40 1 13.0911 0.0932 -5.0111 41 1 15.0243 1.5566 -6.3494 42 1 12.6688 2.3216 -1.3444 43 1 10.2664 1.8790 -1.3610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758691293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:05 Heat of formation + Delta-G solvation = -181.485406 kcal Electronic energy + Delta-G solvation = -25726.989048 eV Core-core repulsion = 21669.525011 eV Total energy + Delta-G solvation = -4057.464037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22512 -39.28486 -38.24626 -37.71631 -37.06253 -36.68851 -35.75654 -34.01978 -32.70923 -31.97134 -31.39018 -28.14181 -26.36143 -24.95327 -24.01233 -22.95532 -22.66160 -21.56451 -20.28695 -19.41246 -18.76722 -18.60126 -17.78055 -17.54658 -17.42627 -17.16086 -17.09464 -16.05217 -15.88256 -15.75637 -15.25063 -15.10651 -14.96859 -14.34988 -14.33001 -14.05959 -14.03042 -13.80003 -13.63564 -13.39246 -13.25412 -13.23091 -13.12250 -12.87279 -12.71634 -12.66084 -12.48695 -12.41904 -12.38346 -12.36397 -11.80532 -11.58087 -11.40897 -11.38720 -11.22008 -11.15935 -10.40881 -9.62773 -9.51868 -8.84706 -6.54831 -0.74048 0.25532 1.15000 1.37100 1.41807 1.54838 1.63591 1.90626 1.99445 2.14860 2.68972 2.81104 3.22629 3.63562 3.68182 3.83079 3.87797 3.91680 3.97710 4.25034 4.36247 4.36902 4.42581 4.42871 4.48091 4.58676 4.70660 4.76819 4.86685 4.94222 4.99097 5.05717 5.11050 5.15616 5.20081 5.21611 5.49531 5.55870 5.79110 5.94111 5.99081 6.05561 6.15851 6.50111 6.70787 6.83012 7.05498 8.10047 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.039036 B = 0.001547 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.110834 B =18097.688810 C =18479.132536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.609 4.609 3 S 2.615 3.385 4 O -0.996 6.996 5 O -0.999 6.999 6 N -1.116 6.116 7 C 0.114 3.886 8 C -0.117 4.117 9 C 0.059 3.941 10 O -0.360 6.360 11 C 0.521 3.479 12 O -0.572 6.572 13 C -0.292 4.292 14 C -0.042 4.042 15 C -0.202 4.202 16 C 0.103 3.897 17 C -0.459 4.459 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.795 5.795 21 Si 0.992 3.008 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.251 1.251 25 C -0.250 4.250 26 C -0.021 4.021 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.425 0.575 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.299 0.701 42 H 0.117 0.883 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.413 -4.385 10.446 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.742 4.742 3 S 2.711 3.289 4 O -0.987 6.987 5 O -0.989 6.989 6 N -0.876 5.876 7 C -0.012 4.012 8 C -0.156 4.156 9 C -0.016 4.016 10 O -0.277 6.277 11 C 0.373 3.627 12 O -0.467 6.467 13 C -0.295 4.295 14 C -0.061 4.061 15 C -0.222 4.222 16 C 0.100 3.900 17 C -0.485 4.485 18 H 0.114 0.886 19 C -0.186 4.186 20 N -0.418 5.418 21 Si 0.811 3.189 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.174 1.174 25 C -0.269 4.269 26 C -0.039 4.039 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.177 0.823 32 H 0.261 0.739 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.152 -3.746 9.789 21.832 hybrid contribution 0.979 -0.505 -0.289 1.138 sum -18.173 -4.251 9.500 20.942 Atomic orbital electron populations 1.21702 0.90418 1.06456 1.03637 1.30304 1.07273 1.22370 1.14244 1.04683 0.72968 0.78618 0.72620 1.93562 1.83640 1.75203 1.46249 1.93561 1.83910 1.74422 1.47003 1.55321 1.25608 1.78521 1.28195 1.21277 0.91795 0.99650 0.88510 1.21620 0.93529 1.02605 0.97857 1.23101 0.76786 1.01531 1.00183 1.86516 1.21722 1.71530 1.47929 1.21270 0.87868 0.75172 0.78384 1.90685 1.76107 1.41610 1.38323 1.18470 0.88552 1.18564 1.03883 1.20541 0.93651 0.96319 0.95541 1.20935 0.93804 1.04809 1.02612 1.18221 0.94012 0.86935 0.90852 1.20274 0.93257 1.39492 0.95482 0.88582 1.27081 1.07029 0.90624 0.93898 1.69777 1.41611 1.30149 1.00228 0.85036 0.74345 0.79783 0.79701 1.18467 1.19097 1.17412 1.20954 0.93607 1.09074 1.03293 1.20780 0.94840 0.93050 0.95258 0.91066 0.87941 0.90882 0.82696 0.82318 0.73893 0.90240 0.88111 0.88534 0.90304 0.91651 0.90393 0.88213 0.87189 0.89005 0.86489 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.92 71.98 0.71 -0.38 16 2 C -0.61 -3.45 6.79 71.98 0.49 -2.96 16 3 S 2.61 37.44 5.46 -56.49 -0.31 37.13 16 4 O -1.00 -21.32 18.08 -127.65 -2.31 -23.62 16 5 O -1.00 -22.71 17.50 -127.65 -2.23 -24.94 16 6 N -1.12 -12.80 5.89 -187.48 -1.10 -13.90 16 7 C 0.11 1.33 6.13 86.38 0.53 1.86 16 8 C -0.12 -1.90 5.74 30.59 0.18 -1.72 16 9 C 0.06 1.43 5.48 71.98 0.39 1.82 16 10 O -0.36 -12.27 9.45 -56.82 -0.54 -12.81 16 11 C 0.52 22.04 7.89 70.26 0.55 22.59 16 12 O -0.57 -26.15 16.11 19.79 0.32 -25.83 16 13 C -0.29 -13.48 5.89 -19.95 -0.12 -13.59 16 14 C -0.04 -2.05 9.52 22.26 0.21 -1.84 16 15 C -0.20 -10.41 8.63 22.47 0.19 -10.22 16 16 C 0.10 5.23 5.57 -21.28 -0.12 5.11 16 17 C -0.46 -22.26 9.04 23.46 0.21 -22.04 16 18 H 0.10 4.34 7.91 -2.91 -0.02 4.32 16 19 C 0.03 1.53 5.14 85.36 0.44 1.96 16 20 N -0.79 -38.16 10.95 21.88 0.24 -37.93 16 21 Si 0.99 33.75 29.60 68.60 2.03 35.78 16 22 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 23 H -0.27 -8.67 7.11 99.48 0.71 -7.97 16 24 H -0.25 -8.18 7.11 99.48 0.71 -7.47 16 25 C -0.25 -11.43 9.73 22.47 0.22 -11.21 16 26 C -0.02 -0.90 9.55 22.26 0.21 -0.68 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.43 4.01 8.62 -96.75 -0.83 3.18 16 33 H 0.08 1.06 7.70 -2.39 -0.02 1.04 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.10 4.80 7.63 -2.91 -0.02 4.78 16 40 H 0.11 5.81 6.16 -2.91 -0.02 5.79 16 41 H 0.30 12.77 8.29 -92.71 -0.77 12.00 16 42 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.13 4.77 7.59 -2.91 -0.02 4.75 16 Total: -1.00 -72.31 382.73 0.40 -71.91 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.20 Total: 25.53 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 4.11 Total: -31.30 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.86 Total: -51.83 kcal Atomic # 8 Polarization: -82.45 SS G_CDS: -4.76 Total: -87.20 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 2.03 Total: 35.78 kcal Atomic # 16 Polarization: 37.44 SS G_CDS: -0.31 Total: 37.13 kcal Total: -72.31 0.40 -71.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758691293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.580 kcal (2) G-P(sol) polarization free energy of solvation -72.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds