Wall clock time and date at job start Sat Apr 11 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47178 * 2 1 4 4 C 1.53001 * 109.47326 * 240.00588 * 2 1 3 5 5 S 1.81398 * 109.47447 * 179.97438 * 4 2 1 6 6 C 1.81400 * 101.91872 * 179.97438 * 5 4 2 7 7 O 1.42091 * 108.58239 * 294.48763 * 5 4 2 8 8 O 1.42107 * 108.57445 * 65.51573 * 5 4 2 9 9 N 1.46497 * 109.47463 * 120.00377 * 2 1 3 10 10 C 1.34779 * 120.00029 * 275.00184 * 9 2 1 11 11 O 1.21280 * 119.99730 * 359.97438 * 10 9 2 12 12 C 1.50697 * 119.99832 * 179.97438 * 10 9 2 13 13 C 1.50703 * 109.47029 * 180.02562 * 12 10 9 14 14 C 1.38326 * 119.96036 * 269.72148 * 13 12 10 15 15 C 1.38280 * 120.13593 * 180.27023 * 14 13 12 16 16 C 1.38125 * 120.06813 * 0.02562 * 15 14 13 17 17 C 1.38857 * 119.92941 * 359.97438 * 16 15 14 18 18 O 1.35759 * 120.06714 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99718 * 354.48542 * 18 17 16 20 20 H 1.07998 * 120.00057 * 5.06548 * 19 18 17 21 21 C 1.38654 * 119.99581 * 185.05723 * 19 18 17 22 22 N 1.31561 * 120.00320 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99982 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46696 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46827 * 119.99911 * 23 21 19 26 26 H 1.48499 * 109.47147 * 240.00412 * 23 21 19 27 27 C 1.38074 * 119.96544 * 90.00097 * 13 12 10 28 28 H 1.09003 * 109.46868 * 59.99217 * 1 2 3 29 29 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46649 * 299.99766 * 1 2 3 31 31 H 1.08998 * 109.46636 * 300.00256 * 4 2 1 32 32 H 1.09004 * 109.46858 * 59.99495 * 4 2 1 33 33 H 1.08991 * 109.47079 * 60.00521 * 6 5 4 34 34 H 1.09002 * 109.46785 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47326 * 299.99870 * 6 5 4 36 36 H 0.97001 * 119.99807 * 94.99625 * 9 2 1 37 37 H 1.08996 * 109.47426 * 60.00133 * 12 10 9 38 38 H 1.08994 * 109.47220 * 299.99909 * 12 10 9 39 39 H 1.07995 * 119.93590 * 0.26096 * 14 13 12 40 40 H 1.07998 * 119.96668 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.03457 * 179.97438 * 16 15 14 42 42 H 0.96999 * 119.99759 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.03806 * 359.69747 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 16 3.8540 -0.7205 -1.2497 6 6 4.2286 -1.6085 -2.7865 7 8 4.3063 0.6203 -1.3793 8 8 4.3072 -1.5028 -0.1533 9 7 2.0184 -0.6907 1.1961 10 6 2.1471 -0.0184 2.3571 11 8 1.8590 1.1585 2.4115 12 6 2.6490 -0.7290 3.5876 13 6 2.6992 0.2391 4.7414 14 6 3.8499 0.9682 4.9819 15 6 3.9018 1.8534 6.0429 16 6 2.8043 2.0117 6.8665 17 6 1.6478 1.2813 6.6276 18 8 0.5676 1.4343 7.4356 19 6 0.7198 2.2239 8.5179 20 1 1.6423 2.7656 8.6658 21 6 -0.3082 2.3404 9.4410 22 7 -1.4319 1.6803 9.2611 23 14 -0.0978 3.4349 10.9402 24 1 1.2476 4.0630 10.9095 25 1 -1.1385 4.4941 10.9297 26 1 -0.2351 2.6179 12.1726 27 6 1.5986 0.3931 5.5608 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6767 -1.7487 -1.2494 32 1 1.6766 -0.2072 -2.1392 33 1 3.8006 -1.0692 -3.6313 34 1 5.3092 -1.6802 -2.9105 35 1 3.8013 -2.6103 -2.7407 36 1 2.2491 -1.6318 1.1524 37 1 3.6481 -1.1215 3.3984 38 1 1.9761 -1.5508 3.8324 39 1 4.7095 0.8457 4.3398 40 1 4.8015 2.4215 6.2279 41 1 2.8456 2.7029 7.6953 42 1 -2.1512 1.7622 9.9067 43 1 0.7004 -0.1761 5.3723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760385894.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:10 Heat of formation + Delta-G solvation = -107.450260 kcal Electronic energy + Delta-G solvation = -27076.952267 eV Core-core repulsion = 23022.698636 eV Total energy + Delta-G solvation = -4054.253632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.96131 -38.77253 -37.38422 -36.75743 -36.37296 -35.92639 -32.50447 -32.14327 -31.32785 -30.15062 -29.06621 -28.13257 -26.92773 -25.15774 -22.50402 -21.50242 -20.96171 -20.22447 -19.32911 -17.63751 -17.30164 -17.08614 -16.99100 -16.67992 -16.30208 -15.84370 -15.30077 -14.84959 -14.42464 -14.28047 -13.97487 -13.89203 -13.78801 -13.74314 -13.44263 -13.35709 -13.21310 -13.03131 -12.56850 -12.44235 -12.38188 -12.35944 -12.24859 -11.78627 -11.59235 -11.49146 -11.36666 -11.19789 -10.92747 -10.75275 -10.66308 -10.50402 -10.36065 -9.70509 -9.26107 -9.23224 -8.75296 -7.94913 -7.10468 -6.35813 -3.94350 -0.52990 2.19204 2.25622 2.51021 2.80074 3.05553 3.15597 3.19147 3.19612 3.25338 3.54271 3.94712 4.04376 4.16390 4.25267 4.50434 4.63832 4.75320 4.95987 5.00353 5.06426 5.09376 5.18459 5.22487 5.36138 5.44417 5.60101 5.67596 5.82732 5.87648 5.95792 6.06750 6.29304 6.30179 6.45338 6.77364 7.03497 7.18182 7.39106 7.43078 7.49130 7.54670 7.94575 8.09998 8.32951 9.10427 9.82499 10.82801 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.002220 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.757537 B =12607.161726 C =13203.083305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.155 3.845 3 H 0.105 0.895 4 C -0.625 4.625 5 S 2.418 3.582 6 C -0.661 4.661 7 O -0.932 6.932 8 O -0.928 6.928 9 N -0.747 5.747 10 C 0.520 3.480 11 O -0.514 6.514 12 C -0.095 4.095 13 C -0.033 4.033 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.181 6.181 19 C -0.388 4.388 20 H 0.092 0.908 21 C 0.037 3.963 22 N -0.866 5.866 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.174 4.174 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.406 0.594 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.268 0.732 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 -10.311 -25.279 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.123 0.877 4 C -0.754 4.754 5 S 2.599 3.401 6 C -0.809 4.809 7 O -0.929 6.929 8 O -0.925 6.925 9 N -0.404 5.404 10 C 0.307 3.693 11 O -0.387 6.387 12 C -0.135 4.135 13 C -0.034 4.034 14 C -0.214 4.214 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.085 6.085 19 C -0.465 4.465 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.502 5.502 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.242 0.758 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.084 -9.192 -24.506 27.393 hybrid contribution -0.370 -0.307 -0.101 0.491 sum 7.714 -9.498 -24.607 27.481 Atomic orbital electron populations 1.22140 0.93364 1.02637 1.03458 1.20487 0.96354 0.97226 0.81016 0.87688 1.30714 1.26680 1.10826 1.07188 1.08023 0.78222 0.76353 0.77485 1.30337 1.12591 1.15217 1.22804 1.93634 1.78543 1.34185 1.86517 1.93599 1.78534 1.71688 1.48689 1.46369 1.69572 1.14741 1.09723 1.20814 0.76942 0.87529 0.84044 1.90765 1.47679 1.15778 1.84466 1.20610 1.03612 0.98296 0.90954 1.18677 0.93928 0.96740 0.94035 1.20397 0.97891 1.02179 1.00899 1.20684 0.97178 0.96966 0.94498 1.21175 0.94415 1.05501 1.03889 1.19274 0.87231 0.92488 0.90910 1.83978 1.30165 1.61163 1.33235 1.21363 1.02892 1.23712 0.98522 0.89100 1.25271 0.94770 0.97954 0.98652 1.70056 1.04398 1.39922 1.35784 0.85656 0.78691 0.79058 0.80053 1.19132 1.20241 1.20230 1.19935 0.98717 1.03030 0.97644 0.91426 0.92043 0.90789 0.84307 0.83519 0.85390 0.85153 0.85298 0.75810 0.87785 0.88108 0.87779 0.87471 0.85649 0.92237 0.86865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.16 1.42 2.63 -67.93 -0.18 1.24 16 3 H 0.11 1.20 7.58 -51.93 -0.39 0.80 16 4 C -0.63 -2.54 5.37 37.16 0.20 -2.34 16 5 S 2.42 15.17 5.24 -107.50 -0.56 14.61 16 6 C -0.66 -1.40 10.62 101.05 1.07 -0.32 16 7 O -0.93 -10.43 18.10 -57.83 -1.05 -11.48 16 8 O -0.93 -8.71 16.46 -57.83 -0.95 -9.66 16 9 N -0.75 -8.03 4.07 -53.81 -0.22 -8.25 16 10 C 0.52 7.97 7.79 -10.99 -0.09 7.88 16 11 O -0.51 -10.23 15.70 5.56 0.09 -10.14 16 12 C -0.10 -1.38 5.83 -29.03 -0.17 -1.55 16 13 C -0.03 -0.64 4.37 -104.65 -0.46 -1.10 16 14 C -0.19 -3.77 9.70 -39.53 -0.38 -4.15 16 15 C -0.07 -1.52 10.04 -39.61 -0.40 -1.92 16 16 C -0.23 -5.41 9.17 -39.39 -0.36 -5.77 16 17 C 0.15 3.97 6.65 -39.11 -0.26 3.71 16 18 O -0.18 -5.42 9.76 0.02 0.00 -5.42 16 19 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 20 H 0.09 2.47 5.20 -52.49 -0.27 2.19 16 21 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 22 N -0.87 -26.15 13.67 55.48 0.76 -25.39 16 23 Si 0.94 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.17 -3.95 9.64 -39.40 -0.38 -4.33 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.14 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.15 0.17 8.14 -51.92 -0.42 -0.25 16 33 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 34 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 35 H 0.13 0.00 8.14 -51.92 -0.42 -0.42 16 36 H 0.41 3.19 7.78 -40.82 -0.32 2.87 16 37 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 38 H 0.10 1.22 8.08 -51.93 -0.42 0.80 16 39 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.13 2.92 5.64 -52.49 -0.30 2.62 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -41.31 380.12 -7.99 -49.30 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -5.90 Total: 4.15 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.85 Total: -19.69 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.54 Total: -33.63 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.91 Total: -36.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 15.17 SS G_CDS: -0.56 Total: 14.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -41.31 -7.99 -49.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760385894.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.155 kcal (2) G-P(sol) polarization free energy of solvation -41.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds