Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47521 * 2 1 4 4 C 1.42900 * 114.00427 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47029 * 180.02562 * 4 3 2 6 6 S 1.81400 * 109.47028 * 180.02562 * 5 4 3 7 7 O 1.42107 * 110.54324 * 68.36996 * 6 5 4 8 8 O 1.42097 * 110.54265 * 291.62480 * 6 5 4 9 9 N 1.65594 * 104.45186 * 179.97438 * 6 5 4 10 10 C 1.34779 * 119.99984 * 64.99742 * 9 6 5 11 11 O 1.21286 * 119.99701 * 0.02562 * 10 9 6 12 12 C 1.50701 * 120.00388 * 180.02562 * 10 9 6 13 13 C 1.50698 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.37633 * 120.12482 * 264.99709 * 13 12 10 15 15 C 1.38620 * 120.24819 * 179.97438 * 14 13 12 16 16 C 1.38653 * 120.49963 * 0.02562 * 15 14 13 17 17 C 1.37603 * 120.24949 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12822 * 84.72533 * 13 12 10 19 19 C 1.41396 * 120.24692 * 359.97438 * 18 13 12 20 20 H 1.08002 * 119.99440 * 333.89889 * 19 18 13 21 21 C 1.39936 * 120.00256 * 153.89938 * 19 18 13 22 22 N 1.30823 * 120.00218 * 343.70459 * 21 19 18 23 23 Si 1.86806 * 120.00088 * 163.70691 * 21 19 18 24 24 H 1.48494 * 109.47040 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47003 * 120.00050 * 23 21 19 26 26 H 1.48501 * 109.47005 * 240.00090 * 23 21 19 27 27 H 1.08998 * 109.46834 * 60.00126 * 1 2 3 28 28 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47131 * 299.99853 * 1 2 3 30 30 H 1.09001 * 109.47131 * 240.00147 * 2 1 3 31 31 H 1.09004 * 109.47227 * 120.00023 * 2 1 3 32 32 H 1.08995 * 109.47113 * 59.99997 * 4 3 2 33 33 H 1.08996 * 109.46948 * 300.00074 * 4 3 2 34 34 H 1.08995 * 109.47579 * 59.99788 * 5 4 3 35 35 H 1.09002 * 109.46877 * 300.00033 * 5 4 3 36 36 H 0.96998 * 120.00276 * 245.00215 * 9 6 5 37 37 H 1.09002 * 109.46474 * 300.00190 * 12 10 9 38 38 H 1.08995 * 109.46963 * 60.00128 * 12 10 9 39 39 H 1.08008 * 119.87960 * 0.02562 * 14 13 12 40 40 H 1.07995 * 119.74938 * 179.97438 * 15 14 13 41 41 H 1.08002 * 119.87746 * 180.02562 * 16 15 14 42 42 H 1.08001 * 120.12586 * 179.97438 * 17 16 15 43 43 H 0.97001 * 120.00340 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 16 5.6338 3.0816 0.0012 7 8 6.1696 2.6325 -1.2361 8 8 6.1696 2.6317 1.2379 9 7 5.9191 4.7128 0.0011 10 6 5.5493 5.4617 1.0589 11 8 5.0079 4.9407 2.0110 12 6 5.8084 6.9462 1.0587 13 6 5.3041 7.5443 2.3467 14 6 4.0451 8.0972 2.4052 15 6 3.5784 8.6476 3.5888 16 6 4.3723 8.6486 4.7255 17 6 5.6347 8.1023 4.6898 18 6 6.1163 7.5346 3.4955 19 6 7.4091 6.9638 3.4490 20 1 7.6321 6.1901 2.7292 21 6 8.3995 7.4013 4.3355 22 7 8.2489 8.5302 4.9793 23 14 9.9367 6.3733 4.5998 24 1 9.8654 5.1511 3.7595 25 1 11.1336 7.1658 4.2193 26 1 10.0335 5.9863 6.0302 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8341 0.9765 -0.8891 33 1 3.8333 0.9767 0.8908 34 1 3.4223 3.4217 0.8911 35 1 3.4230 3.4222 -0.8888 36 1 6.3524 5.1294 -0.7602 37 1 6.8794 7.1280 0.9689 38 1 5.2901 7.4054 0.2170 39 1 3.4179 8.1015 1.5259 40 1 2.5893 9.0796 3.6255 41 1 3.9984 9.0798 5.6424 42 1 6.2516 8.1045 5.5764 43 1 8.9352 8.8332 5.5941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761105702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = -142.918508 kcal Electronic energy + Delta-G solvation = -27599.855886 eV Core-core repulsion = 23544.064236 eV Total energy + Delta-G solvation = -4055.791650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.78546 -38.43027 -37.49340 -37.15029 -36.09866 -34.18867 -33.65959 -32.95528 -31.78721 -30.47380 -29.50678 -27.09700 -25.09855 -23.81416 -23.12969 -21.91579 -20.97752 -19.76133 -19.43563 -18.17767 -17.39132 -17.14573 -16.97210 -16.67737 -16.23670 -15.47826 -15.40205 -14.93848 -14.78551 -14.55630 -14.37867 -13.98395 -13.55385 -13.44899 -12.85680 -12.78043 -12.65894 -12.59514 -12.37764 -12.22990 -12.07523 -11.78924 -11.60107 -11.55171 -11.51875 -11.37738 -11.15820 -11.09213 -11.01241 -10.73924 -10.51137 -10.39790 -9.98110 -9.79526 -9.53858 -9.40828 -9.18648 -7.38370 -7.35287 -6.77055 -4.38762 -0.06362 2.29870 2.60654 2.77915 2.96962 3.09772 3.17401 3.22804 3.25072 3.70021 3.94859 4.07271 4.28559 4.51080 4.62022 4.72704 4.80774 4.86377 4.91891 5.04451 5.19454 5.23433 5.33688 5.52191 5.58591 5.65696 5.80490 5.85152 5.91808 6.20825 6.32816 6.45442 6.68776 6.79354 6.86473 7.05513 7.24371 7.36787 7.59771 7.84853 7.95891 8.01970 8.08828 8.26182 8.61067 8.87166 8.96107 10.16692 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.003370 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.833803 B = 8307.254786 C = 9523.852456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.378 6.378 4 C 0.079 3.921 5 C -0.630 4.630 6 S 2.598 3.402 7 O -0.952 6.952 8 O -0.920 6.920 9 N -1.057 6.057 10 C 0.529 3.471 11 O -0.474 6.474 12 C -0.069 4.069 13 C -0.195 4.195 14 C -0.078 4.078 15 C -0.240 4.240 16 C -0.104 4.104 17 C -0.157 4.157 18 C 0.130 3.870 19 C -0.456 4.456 20 H 0.076 0.924 21 C 0.078 3.922 22 N -0.792 5.792 23 Si 0.901 3.099 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.271 1.271 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.154 0.846 35 H 0.140 0.860 36 H 0.432 0.568 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.296 -10.211 -11.732 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.297 6.297 4 C 0.001 3.999 5 C -0.758 4.758 6 S 2.691 3.309 7 O -0.943 6.943 8 O -0.910 6.910 9 N -0.824 5.824 10 C 0.317 3.683 11 O -0.343 6.343 12 C -0.111 4.111 13 C -0.197 4.197 14 C -0.096 4.096 15 C -0.260 4.260 16 C -0.123 4.123 17 C -0.177 4.177 18 C 0.127 3.873 19 C -0.486 4.486 20 H 0.094 0.906 21 C -0.140 4.140 22 N -0.417 5.417 23 Si 0.725 3.275 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.196 1.196 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.172 0.828 35 H 0.158 0.842 36 H 0.268 0.732 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.057 -10.947 -10.823 16.935 hybrid contribution 0.461 -0.035 -0.217 0.511 sum -6.596 -10.982 -11.040 16.912 Atomic orbital electron populations 1.21748 0.93391 1.02374 1.03375 1.22573 0.95951 0.83498 1.00532 1.87954 1.19473 1.26798 1.95484 1.21951 0.83833 0.92436 1.01682 1.30702 1.26636 1.04744 1.13717 1.05540 0.77232 0.73479 0.74648 1.93627 1.76310 1.78981 1.45337 1.93690 1.74640 1.78472 1.44230 1.55179 1.68922 1.29935 1.28368 1.21572 0.75472 0.91655 0.79567 1.90846 1.38405 1.73404 1.31618 1.20396 1.04236 0.87658 0.98787 1.18997 0.97069 1.10376 0.93287 1.20299 0.94473 0.98619 0.96257 1.20306 0.99544 1.11525 0.94577 1.20701 0.95133 1.00003 0.96455 1.21319 0.94499 1.03283 0.98550 1.17354 0.91795 0.88428 0.89695 1.19550 0.94752 1.18421 1.15853 0.90584 1.25883 1.00214 0.94054 0.93883 1.69818 1.34024 1.16907 1.20963 0.86369 0.80558 0.81088 0.79504 1.18153 1.19958 1.19577 0.91784 0.90921 0.91591 0.93048 0.92870 0.91787 0.91415 0.82770 0.84152 0.73188 0.87402 0.89323 0.89611 0.89586 0.89505 0.86429 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.45 6.66 37.16 0.25 0.70 16 3 O -0.38 -4.53 10.34 -35.23 -0.36 -4.89 16 4 C 0.08 0.89 5.95 37.16 0.22 1.11 16 5 C -0.63 -7.36 6.25 37.16 0.23 -7.13 16 6 S 2.60 35.91 5.11 -107.50 -0.55 35.36 16 7 O -0.95 -13.58 18.08 -57.54 -1.04 -14.62 16 8 O -0.92 -17.11 17.04 -64.79 -1.10 -18.21 16 9 N -1.06 -13.90 5.60 31.22 0.17 -13.73 16 10 C 0.53 9.29 7.18 -10.98 -0.08 9.21 16 11 O -0.47 -10.18 14.14 -11.57 -0.16 -10.34 16 12 C -0.07 -1.22 5.18 -29.03 -0.15 -1.37 16 13 C -0.20 -4.41 4.43 -103.92 -0.46 -4.87 16 14 C -0.08 -1.69 9.66 -39.66 -0.38 -2.07 16 15 C -0.24 -5.34 10.05 -39.29 -0.39 -5.74 16 16 C -0.10 -2.47 10.02 -39.66 -0.40 -2.86 16 17 C -0.16 -4.10 8.69 -38.87 -0.34 -4.43 16 18 C 0.13 3.36 5.56 -106.82 -0.59 2.77 16 19 C -0.46 -11.79 8.14 -37.75 -0.31 -12.10 16 20 H 0.08 1.92 6.67 -52.49 -0.35 1.57 16 21 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 22 N -0.79 -20.11 10.96 55.55 0.61 -19.50 16 23 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.15 2.04 7.19 -51.93 -0.37 1.67 16 35 H 0.14 1.27 8.14 -51.92 -0.42 0.84 16 36 H 0.43 3.91 8.79 -34.47 -0.30 3.60 16 37 H 0.11 1.86 7.08 -51.93 -0.37 1.49 16 38 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 39 H 0.09 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.12 3.17 6.21 -52.49 -0.33 2.84 16 43 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -34.46 376.99 -9.82 -44.28 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.92 Total: 7.72 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -2.11 Total: -25.69 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.78 Total: -33.23 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -2.67 Total: -48.07 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Atomic # 16 Polarization: 35.91 SS G_CDS: -0.55 Total: 35.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.46 -9.82 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761105702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.640 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds